Wall clock time and date at job start Tue Mar 31 2020 23:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46844 * 2 1 4 4 C 1.34781 * 119.99755 * 179.97438 * 3 2 1 5 5 O 1.21594 * 119.99815 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00042 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99907 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47291 * 179.97438 * 7 6 4 9 9 N 1.46497 * 109.47506 * 179.97438 * 8 7 6 10 10 S 1.65603 * 120.00269 * 164.99575 * 9 8 7 11 11 O 1.42101 * 106.40420 * 311.46503 * 10 9 8 12 12 O 1.42093 * 106.40486 * 178.54249 * 10 9 8 13 13 C 1.76202 * 107.21304 * 65.00274 * 10 9 8 14 14 C 1.38656 * 119.87802 * 270.24806 * 13 10 9 15 15 C 1.38611 * 120.50290 * 180.30014 * 14 13 10 16 16 C 1.37646 * 120.24720 * 359.45638 * 15 14 13 17 17 C 1.40700 * 119.74049 * 0.26612 * 16 15 14 18 18 C 1.41394 * 120.23887 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99918 * 204.39256 * 18 17 16 20 20 C 1.39939 * 120.00458 * 24.38628 * 18 17 16 21 21 N 1.30826 * 119.99815 * 17.86380 * 20 18 17 22 22 Si 1.86807 * 120.00442 * 197.86044 * 20 18 17 23 23 H 1.48504 * 109.46582 * 94.69503 * 22 20 18 24 24 H 1.48499 * 109.47234 * 214.69507 * 22 20 18 25 25 H 1.48502 * 109.46792 * 334.69880 * 22 20 18 26 26 C 1.37595 * 119.87364 * 90.00510 * 13 10 9 27 27 H 1.08999 * 109.46884 * 300.00064 * 1 2 3 28 28 H 1.09005 * 109.47327 * 59.99584 * 1 2 3 29 29 H 1.09001 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47007 * 240.00466 * 2 1 3 31 31 H 1.08993 * 109.47192 * 120.00097 * 2 1 3 32 32 H 0.96994 * 120.00628 * 0.02562 * 3 2 1 33 33 H 0.97002 * 120.00021 * 359.97438 * 6 4 3 34 34 H 1.09003 * 109.47870 * 59.99928 * 7 6 4 35 35 H 1.09004 * 109.47301 * 299.99591 * 7 6 4 36 36 H 1.08996 * 109.47119 * 59.99718 * 8 7 6 37 37 H 1.09000 * 109.47134 * 300.00311 * 8 7 6 38 38 H 0.97003 * 120.00209 * 345.00253 * 9 8 7 39 39 H 1.08005 * 119.75084 * 0.05438 * 14 13 10 40 40 H 1.07994 * 119.87907 * 179.72408 * 15 14 13 41 41 H 1.07991 * 120.12819 * 180.25140 * 16 15 14 42 42 H 0.97002 * 120.00124 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.13108 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1335 0.7033 0.0005 6 7 3.7926 2.8982 0.0010 7 6 5.2329 3.1658 0.0010 8 6 5.4708 4.6772 0.0010 9 7 6.9111 4.9449 0.0017 10 16 7.4723 6.4582 -0.3695 11 8 6.8089 6.8505 -1.5633 12 8 8.8870 6.4023 -0.2489 13 6 6.9078 7.5482 0.8947 14 6 5.6846 8.1871 0.7603 15 6 5.2308 9.0519 1.7439 16 6 5.9869 9.2771 2.8719 17 6 7.2272 8.6297 3.0215 18 6 8.0127 8.8538 4.1757 19 1 9.0814 8.7023 4.1392 20 6 7.4054 9.2719 5.3651 21 7 6.1158 9.1244 5.5281 22 14 8.4363 10.0405 6.7202 23 1 8.4011 11.5194 6.5903 24 1 7.8882 9.6466 8.0429 25 1 9.8388 9.5666 6.6043 26 6 7.6804 7.7582 2.0137 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3880 2.1185 0.0004 33 1 3.1623 3.6355 0.0007 34 1 5.6841 2.7274 -0.8891 35 1 5.6841 2.7267 0.8909 36 1 5.0197 5.1160 0.8910 37 1 5.0197 5.1160 -0.8889 38 1 7.5362 4.2358 0.2194 39 1 5.0826 8.0126 -0.1192 40 1 4.2786 9.5477 1.6269 41 1 5.6297 9.9482 3.6389 42 1 5.6949 9.4139 6.3527 43 1 8.6308 7.2562 2.1184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663461663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:27 Heat of formation + Delta-G solvation = -121.890209 kcal Electronic energy + Delta-G solvation = -26647.965702 eV Core-core repulsion = 22625.378658 eV Total energy + Delta-G solvation = -4022.587044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02810 -39.42798 -38.30010 -37.52637 -36.89824 -36.18588 -35.65856 -34.95528 -31.89457 -31.56981 -31.48551 -28.92358 -27.33521 -24.30083 -23.66770 -23.31436 -22.76016 -22.07601 -20.61272 -19.66722 -19.53009 -18.50692 -17.72257 -17.32564 -17.15173 -17.02285 -16.75522 -16.52110 -15.94363 -15.85215 -15.41209 -15.25335 -15.12416 -15.01721 -14.87565 -14.29010 -13.71163 -13.41331 -13.33240 -13.26324 -13.23261 -13.07316 -13.07208 -13.03372 -12.78882 -12.64506 -12.59145 -12.57213 -12.33028 -12.20500 -11.53798 -11.43232 -11.34701 -11.14547 -10.53871 -10.37842 -9.83227 -9.77661 -9.54312 -8.73148 -6.44267 -0.50662 0.42374 0.85985 1.37317 1.45718 1.49990 1.63391 2.13195 2.17483 2.22035 2.56633 2.79880 3.34671 3.48381 3.53822 3.71891 4.09400 4.16774 4.27620 4.33061 4.42581 4.48370 4.51829 4.56460 4.87344 4.89741 4.91935 4.92799 5.01327 5.08897 5.10458 5.21681 5.29230 5.41561 5.42797 5.54349 5.58447 5.90840 5.95825 5.99375 6.05626 6.12920 6.54325 6.80793 6.86122 7.08543 7.56218 8.24554 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.002594 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.674639 B =10790.094302 C =12208.192988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 N -0.734 5.734 4 C 0.697 3.303 5 O -0.639 6.639 6 N -0.732 5.732 7 C 0.139 3.861 8 C 0.107 3.893 9 N -1.106 6.106 10 S 2.728 3.272 11 O -0.981 6.981 12 O -0.995 6.995 13 C -0.639 4.639 14 C -0.143 4.143 15 C -0.122 4.122 16 C -0.141 4.141 17 C 0.060 3.940 18 C -0.499 4.499 19 H 0.076 0.924 20 C 0.039 3.961 21 N -0.820 5.820 22 Si 0.980 3.020 23 H -0.262 1.262 24 H -0.266 1.266 25 H -0.261 1.261 26 C -0.145 4.145 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.413 0.587 33 H 0.415 0.585 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.428 0.572 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.112 0.888 42 H 0.291 0.709 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.509 -10.896 -7.079 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.005 3.995 3 N -0.391 5.391 4 C 0.397 3.603 5 O -0.521 6.521 6 N -0.390 5.390 7 C 0.012 3.988 8 C -0.020 4.020 9 N -0.868 5.868 10 S 2.820 3.180 11 O -0.971 6.971 12 O -0.985 6.985 13 C -0.727 4.727 14 C -0.164 4.164 15 C -0.141 4.141 16 C -0.161 4.161 17 C 0.057 3.943 18 C -0.528 4.528 19 H 0.094 0.906 20 C -0.177 4.177 21 N -0.446 5.446 22 Si 0.801 3.199 23 H -0.186 1.186 24 H -0.190 1.190 25 H -0.185 1.185 26 C -0.166 4.166 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.250 0.750 33 H 0.252 0.748 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.264 0.736 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.626 -11.371 -7.691 17.989 hybrid contribution -0.010 0.941 1.649 1.898 sum -11.636 -10.430 -6.043 16.754 Atomic orbital electron populations 1.21956 0.91757 1.04208 1.03310 1.21238 0.95895 0.81147 1.01229 1.45099 1.04408 1.10204 1.79418 1.16140 0.83340 0.83155 0.77692 1.90907 1.56393 1.44796 1.59970 1.44746 1.08149 1.06303 1.79771 1.21168 0.80571 0.94010 1.03017 1.21472 0.79975 0.96268 1.04258 1.55080 1.14782 1.28260 1.88663 1.00574 0.71870 0.72397 0.73166 1.93500 1.76573 1.82617 1.44434 1.93512 1.30758 1.86683 1.87551 1.30237 1.06364 1.19949 1.16191 1.20512 0.94954 1.01048 0.99889 1.21160 0.99675 0.99160 0.94087 1.21657 0.96568 1.00414 0.97462 1.18054 0.93253 0.90200 0.92835 1.19850 0.95654 1.42118 0.95149 0.90583 1.26687 0.96323 0.93052 1.01648 1.69803 1.12433 1.34621 1.27703 0.85209 0.79113 0.79122 0.76438 1.18643 1.19017 1.18514 1.20856 0.99650 1.00898 0.95197 0.91272 0.91031 0.89675 0.92717 0.93007 0.75022 0.74796 0.90872 0.91386 0.90113 0.88311 0.73577 0.84361 0.85347 0.87031 0.89778 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.03 71.98 0.72 -0.29 16 2 C 0.13 1.77 6.39 86.38 0.55 2.33 16 3 N -0.73 -10.76 5.56 -478.53 -2.66 -13.42 16 4 C 0.70 15.59 8.57 179.05 1.53 17.13 16 5 O -0.64 -20.44 16.34 -4.01 -0.07 -20.51 16 6 N -0.73 -12.79 5.56 -478.53 -2.66 -15.45 16 7 C 0.14 2.76 5.82 86.38 0.50 3.26 16 8 C 0.11 2.19 6.34 86.38 0.55 2.73 16 9 N -1.11 -27.42 6.00 -187.50 -1.12 -28.55 16 10 S 2.73 92.09 5.73 -56.49 -0.32 91.76 16 11 O -0.98 -35.09 16.75 -128.00 -2.14 -37.23 16 12 O -0.99 -39.56 17.26 -128.00 -2.21 -41.77 16 13 C -0.64 -25.90 5.94 22.22 0.13 -25.77 16 14 C -0.14 -5.53 9.53 22.46 0.21 -5.32 16 15 C -0.12 -5.04 10.02 22.22 0.22 -4.82 16 16 C -0.14 -6.90 8.70 22.73 0.20 -6.71 16 17 C 0.06 3.10 5.58 -21.29 -0.12 2.98 16 18 C -0.50 -26.07 9.05 23.46 0.21 -25.86 16 19 H 0.08 3.90 7.91 -2.91 -0.02 3.88 16 20 C 0.04 1.86 5.14 85.25 0.44 2.30 16 21 N -0.82 -40.26 10.95 21.82 0.24 -40.02 16 22 Si 0.98 36.86 29.60 68.60 2.03 38.89 16 23 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 24 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 25 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 26 C -0.14 -6.87 9.26 22.73 0.21 -6.66 16 27 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.07 0.36 8.14 -2.38 -0.02 0.35 16 29 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.41 3.30 8.49 -92.71 -0.79 2.51 16 33 H 0.42 4.55 8.49 -92.71 -0.79 3.77 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.10 1.80 7.75 -2.39 -0.02 1.78 16 38 H 0.43 8.98 8.65 -96.74 -0.84 8.14 16 39 H 0.14 4.41 7.61 -2.91 -0.02 4.39 16 40 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.11 5.65 6.15 -2.92 -0.02 5.63 16 42 H 0.29 12.84 8.30 -92.71 -0.77 12.07 16 43 H 0.11 5.04 7.60 -2.91 -0.02 5.02 16 Total: -1.00 -73.74 379.57 -4.89 -78.64 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -1.34 Total: 32.37 kcal Atomic # 6 Polarization: -50.07 SS G_CDS: 5.37 Total: -44.71 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -6.21 Total: -97.45 kcal Atomic # 8 Polarization: -95.09 SS G_CDS: -4.42 Total: -99.51 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Atomic # 16 Polarization: 92.09 SS G_CDS: -0.32 Total: 91.76 kcal Total: -73.74 -4.89 -78.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663461663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.251 kcal (2) G-P(sol) polarization free energy of solvation -73.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds