Wall clock time and date at job start Tue Mar 31 2020 23:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47447 * 2 1 4 4 S 1.65600 * 120.00245 * 165.00334 * 3 2 1 5 5 O 1.42098 * 106.39962 * 311.46194 * 4 3 2 6 6 O 1.42100 * 106.40111 * 178.54466 * 4 3 2 7 7 C 1.76199 * 107.21677 * 65.00229 * 4 3 2 8 8 C 1.38253 * 120.00077 * 269.95135 * 7 4 3 9 9 C 1.38204 * 119.99863 * 179.97438 * 8 7 4 10 10 C 1.38261 * 120.00515 * 0.07163 * 9 8 7 11 11 C 1.38208 * 119.99533 * 359.95684 * 10 9 8 12 12 C 1.50701 * 119.99804 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.46856 * 270.01572 * 12 11 10 14 14 C 1.34781 * 119.99854 * 179.97438 * 13 12 11 15 15 O 1.21590 * 119.99689 * 0.02562 * 14 13 12 16 16 N 1.34771 * 119.99955 * 180.02562 * 14 13 12 17 17 C 1.46499 * 120.00043 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47187 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00238 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99906 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00106 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00088 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.46943 * 89.99792 * 22 20 18 24 24 H 1.48499 * 109.47127 * 210.00351 * 22 20 18 25 25 H 1.48509 * 109.46808 * 330.00120 * 22 20 18 26 26 C 1.38220 * 119.99875 * 90.00339 * 7 4 3 27 27 H 1.09000 * 109.47263 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46722 * 299.99453 * 1 2 3 29 29 H 1.09002 * 109.47361 * 59.99549 * 1 2 3 30 30 H 1.09000 * 109.46722 * 240.00547 * 2 1 3 31 31 H 1.09002 * 109.47361 * 120.00451 * 2 1 3 32 32 H 0.97009 * 119.99640 * 345.00819 * 3 2 1 33 33 H 1.08005 * 119.99943 * 0.04961 * 8 7 4 34 34 H 1.08004 * 120.00227 * 180.02562 * 9 8 7 35 35 H 1.07992 * 120.00025 * 179.97438 * 10 9 8 36 36 H 1.08990 * 109.47415 * 30.02092 * 12 11 10 37 37 H 1.09006 * 109.46768 * 150.01991 * 12 11 10 38 38 H 0.97001 * 120.00118 * 0.02562 * 13 12 11 39 39 H 0.97001 * 120.00017 * 0.02562 * 16 14 13 40 40 H 1.09000 * 109.47040 * 299.99968 * 17 16 14 41 41 H 1.08997 * 109.47093 * 59.99675 * 17 16 14 42 42 H 0.96992 * 120.00104 * 179.97438 * 21 20 18 43 43 H 1.08000 * 119.99660 * 0.26988 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6004 1.7000 0.3711 5 8 3.8849 0.9831 1.5645 6 8 3.7651 3.1064 0.2512 7 6 4.5894 0.9736 -0.8934 8 6 5.0356 -0.3281 -0.7600 9 6 5.8108 -0.8979 -1.7521 10 6 6.1414 -0.1659 -2.8774 11 6 5.6958 1.1356 -3.0106 12 6 6.0555 1.9334 -4.2374 13 7 7.3137 2.6469 -4.0043 14 6 7.8339 3.4291 -4.9708 15 8 7.2587 3.5429 -6.0360 16 7 8.9915 4.0851 -4.7565 17 6 9.5566 4.9358 -5.8068 18 6 10.8429 5.5502 -5.3178 19 1 11.2031 5.3295 -4.3239 20 6 11.5598 6.3941 -6.1393 21 7 11.1214 6.6626 -7.3498 22 14 13.1538 7.1563 -5.5329 23 1 14.2903 6.2635 -5.8736 24 1 13.3496 8.4771 -6.1828 25 1 13.0884 7.3343 -4.0599 26 6 4.9199 1.7056 -2.0184 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.4149 2.1090 -0.2173 33 1 4.7773 -0.9000 0.1191 34 1 6.1591 -1.9150 -1.6481 35 1 6.7475 -0.6111 -3.6524 36 1 6.1713 1.2608 -5.0872 37 1 5.2638 2.6523 -4.4484 38 1 7.7727 2.5558 -3.1546 39 1 9.4505 3.9940 -3.9068 40 1 9.7551 4.3344 -6.6939 41 1 8.8481 5.7261 -6.0547 42 1 11.6255 7.2566 -7.9276 43 1 4.5756 2.7242 -2.1202 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672244633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:36 Heat of formation + Delta-G solvation = -85.825102 kcal Electronic energy + Delta-G solvation = -26387.898399 eV Core-core repulsion = 22366.875255 eV Total energy + Delta-G solvation = -4021.023143 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.00165 -38.95018 -37.61882 -36.37214 -36.19038 -34.96821 -34.01374 -32.38781 -31.70484 -31.39224 -30.24294 -27.49825 -25.79808 -23.76701 -23.37506 -22.65963 -21.92089 -20.21183 -19.88728 -18.48084 -17.91317 -17.68021 -16.77942 -16.45188 -16.10705 -15.98688 -15.71454 -15.26790 -15.04528 -14.65442 -14.62653 -14.52357 -13.82731 -13.69368 -13.52268 -13.03309 -12.97925 -12.87268 -12.64644 -12.49152 -12.46926 -12.35421 -12.20625 -11.95317 -11.94508 -11.73413 -11.54432 -11.10594 -10.94132 -10.86781 -10.28962 -10.05277 -9.83549 -9.60525 -9.35759 -9.21619 -8.82783 -8.68130 -7.76146 -6.13869 -4.20301 -0.01797 0.41207 0.80519 2.55260 2.97532 3.26256 3.31998 3.34388 3.37516 3.59820 3.90918 3.93601 4.31073 4.35016 4.38068 4.41448 4.56666 4.59143 4.74418 4.80599 4.93675 5.01032 5.09514 5.14078 5.22240 5.35185 5.41185 5.42029 5.51550 5.60679 5.63692 5.73405 5.83107 6.09376 6.38679 6.45482 6.76910 7.10732 7.51600 7.55854 7.58333 7.90771 8.05014 8.77528 8.93719 9.32550 9.48690 10.96363 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.001992 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.539203 B =14050.873203 C =14421.571714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.110 3.890 3 N -1.118 6.118 4 S 2.696 3.304 5 O -0.957 6.957 6 O -0.954 6.954 7 C -0.680 4.680 8 C -0.019 4.019 9 C -0.141 4.141 10 C -0.042 4.042 11 C -0.120 4.120 12 C 0.181 3.819 13 N -0.756 5.756 14 C 0.694 3.306 15 O -0.601 6.601 16 N -0.728 5.728 17 C 0.267 3.733 18 C -0.542 4.542 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.000 4.000 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.420 0.580 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.393 0.607 39 H 0.387 0.613 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.266 0.734 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.534 -18.980 16.495 32.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.016 4.016 3 N -0.879 5.879 4 S 2.786 3.214 5 O -0.947 6.947 6 O -0.944 6.944 7 C -0.767 4.767 8 C -0.039 4.039 9 C -0.160 4.160 10 C -0.061 4.061 11 C -0.121 4.121 12 C 0.056 3.944 13 N -0.414 5.414 14 C 0.393 3.607 15 O -0.480 6.480 16 N -0.380 5.380 17 C 0.146 3.854 18 C -0.580 4.580 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.732 3.268 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.020 4.020 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.254 0.746 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.226 0.774 39 H 0.219 0.781 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.579 -18.420 16.039 31.938 hybrid contribution 1.245 0.209 0.208 1.279 sum -19.334 -18.211 16.248 31.136 Atomic orbital electron populations 1.21962 0.93881 1.03129 1.02940 1.21297 0.96676 0.81378 1.02226 1.55592 1.28738 1.14943 1.88666 1.01827 0.72384 0.73335 0.73866 1.93587 1.83873 1.74648 1.42597 1.93631 1.85056 1.28900 1.86806 1.30883 1.21281 1.06568 1.17978 1.20955 0.92842 0.92292 0.97804 1.21313 0.99674 1.00757 0.94255 1.21526 0.94451 0.93215 0.96924 1.20160 0.99723 0.95186 0.97042 1.19917 0.86758 0.94447 0.93248 1.45197 1.25896 1.52255 1.18055 1.16132 0.81869 0.79102 0.83566 1.90876 1.62841 1.68830 1.25430 1.45728 1.22435 1.49781 1.20081 1.18991 0.92676 0.88484 0.85278 1.21230 1.06749 1.29006 1.01042 0.91937 1.24950 0.98225 0.96146 0.94749 1.69978 1.38985 1.35838 1.07493 0.86402 0.82936 0.78583 0.78889 1.20514 1.21011 1.19768 1.20920 0.92276 0.98819 0.89941 0.90874 0.91678 0.91771 0.91618 0.90144 0.74551 0.84247 0.84741 0.84688 0.90688 0.90700 0.77413 0.78101 0.95720 0.95689 0.92473 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.47 10.05 37.16 0.37 -0.10 16 2 C 0.11 0.46 6.94 -4.04 -0.03 0.44 16 3 N -1.12 -6.29 6.00 -10.61 -0.06 -6.35 16 4 S 2.70 24.02 5.74 -107.50 -0.62 23.41 16 5 O -0.96 -10.72 16.75 -57.17 -0.96 -11.68 16 6 O -0.95 -11.70 17.28 -57.17 -0.99 -12.69 16 7 C -0.68 -5.97 5.95 -39.58 -0.24 -6.20 16 8 C -0.02 -0.15 9.52 -39.59 -0.38 -0.52 16 9 C -0.14 -1.00 10.05 -39.58 -0.40 -1.40 16 10 C -0.04 -0.35 9.70 -39.58 -0.38 -0.73 16 11 C -0.12 -1.18 5.25 -104.63 -0.55 -1.73 16 12 C 0.18 2.26 5.80 -5.19 -0.03 2.23 16 13 N -0.76 -11.30 5.55 -66.41 -0.37 -11.67 16 14 C 0.69 14.38 8.57 -86.92 -0.74 13.64 16 15 O -0.60 -14.99 16.34 5.29 0.09 -14.90 16 16 N -0.73 -15.83 5.55 -66.42 -0.37 -16.20 16 17 C 0.27 7.23 5.43 -5.19 -0.03 7.20 16 18 C -0.54 -14.93 9.28 -34.44 -0.32 -15.25 16 19 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 22 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 C 0.00 0.00 9.18 -39.58 -0.36 -0.36 16 27 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.33 7.75 -51.93 -0.40 -0.07 16 32 H 0.42 1.72 8.65 -34.47 -0.30 1.42 16 33 H 0.14 0.80 7.62 -52.48 -0.40 0.40 16 34 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 38 H 0.39 4.93 8.48 -40.82 -0.35 4.58 16 39 H 0.39 7.23 8.34 -40.82 -0.34 6.89 16 40 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.14 1.38 7.61 -52.49 -0.40 0.98 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -38.10 384.02 -10.90 -49.00 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.94 Total: 5.93 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -3.18 Total: -1.13 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.06 Total: -59.82 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -1.86 Total: -39.27 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 24.02 SS G_CDS: -0.62 Total: 23.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.10 -10.90 -49.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672244633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.824 kcal (2) G-P(sol) polarization free energy of solvation -38.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds