Wall clock time and date at job start Tue Mar 31 2020 23:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81404 * 109.46743 * 2 1 4 4 O 1.42099 * 108.57766 * 65.51420 * 3 2 1 5 5 O 1.42102 * 108.57891 * 294.49028 * 3 2 1 6 6 C 1.81402 * 101.91994 * 180.02562 * 3 2 1 7 7 C 1.53004 * 109.46811 * 179.97438 * 6 3 2 8 8 C 1.53001 * 109.46911 * 179.97438 * 7 6 3 9 9 N 1.46503 * 109.47079 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99813 * 180.02562 * 9 8 7 11 11 O 1.21573 * 120.00029 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00018 * 180.02562 * 10 9 8 13 13 C 1.39248 * 120.00407 * 185.78800 * 12 10 9 14 14 C 1.39681 * 119.56995 * 18.76828 * 13 12 10 15 15 C 1.38646 * 119.49286 * 180.02562 * 14 13 12 16 16 C 1.38360 * 118.67159 * 359.72559 * 15 14 13 17 17 C 1.40567 * 119.12760 * 0.53544 * 16 15 14 18 18 C 1.41335 * 119.78665 * 179.72895 * 17 16 15 19 19 H 1.07996 * 120.00106 * 8.66320 * 18 17 16 20 20 C 1.40026 * 119.99948 * 188.65820 * 18 17 16 21 21 N 1.30747 * 119.99730 * 195.96810 * 20 18 17 22 22 Si 1.86798 * 120.00021 * 15.96594 * 20 18 17 23 23 H 1.48500 * 109.47276 * 269.99741 * 22 20 18 24 24 H 1.48497 * 109.47183 * 29.99785 * 22 20 18 25 25 H 1.48501 * 109.47159 * 150.00195 * 22 20 18 26 26 N 1.31895 * 119.57654 * 198.78688 * 13 12 10 27 27 H 1.09004 * 109.46918 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46875 * 299.99465 * 1 2 3 29 29 H 1.08991 * 109.47855 * 60.00034 * 1 2 3 30 30 H 1.09005 * 109.46875 * 240.00535 * 2 1 3 31 31 H 1.08999 * 109.47802 * 119.99666 * 2 1 3 32 32 H 1.08998 * 109.47202 * 59.99952 * 6 3 2 33 33 H 1.08996 * 109.46979 * 299.99598 * 6 3 2 34 34 H 1.08998 * 109.47276 * 59.99999 * 7 6 3 35 35 H 1.08996 * 109.47022 * 299.99573 * 7 6 3 36 36 H 1.09004 * 109.47216 * 60.00078 * 8 7 6 37 37 H 1.09001 * 109.47087 * 300.00290 * 8 7 6 38 38 H 0.96991 * 119.99936 * 0.02562 * 9 8 7 39 39 H 0.96999 * 119.99891 * 5.78185 * 12 10 9 40 40 H 1.08004 * 120.25636 * 359.97438 * 14 13 12 41 41 H 1.08001 * 120.66691 * 179.97438 * 15 14 13 42 42 H 1.08002 * 120.43493 * 180.26318 * 16 15 14 43 43 H 0.96992 * 120.00510 * 354.92349 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7591 2.3232 1.2258 5 8 1.7590 2.3233 -1.2258 6 6 3.9329 1.4721 -0.0008 7 6 4.6279 2.8352 -0.0015 8 6 6.1446 2.6342 -0.0016 9 7 6.8101 3.9394 -0.0029 10 6 8.1561 4.0095 -0.0037 11 8 8.8179 2.9896 -0.0028 12 7 8.7683 5.2101 -0.0043 13 6 10.1534 5.2853 -0.1268 14 6 10.8609 4.1930 -0.6339 15 6 12.2400 4.2694 -0.7546 16 6 12.8762 5.4367 -0.3712 17 6 12.1087 6.4991 0.1370 18 6 12.7449 7.6957 0.5383 19 1 13.7929 7.8474 0.3264 20 6 12.0162 8.6847 1.2104 21 7 12.4949 9.8976 1.3065 22 14 10.3603 8.2711 1.9695 23 1 9.2856 8.5075 0.9723 24 1 10.3475 6.8447 2.3823 25 1 10.1314 9.1323 3.1574 26 7 10.7803 6.3870 0.2380 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8935 -0.5138 0.8900 32 1 4.2252 0.9151 -0.8910 33 1 4.2259 0.9149 0.8890 34 1 4.3356 3.3925 0.8884 35 1 4.3348 3.3919 -0.8915 36 1 6.4373 2.0767 -0.8913 37 1 6.4374 2.0775 0.8887 38 1 6.2821 4.7530 -0.0032 39 1 8.2441 6.0218 0.0803 40 1 10.3378 3.2953 -0.9290 41 1 12.8059 3.4361 -1.1440 42 1 13.9489 5.5288 -0.4570 43 1 13.3857 10.0949 0.9776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672719400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:19 Heat of formation + Delta-G solvation = -76.334108 kcal Electronic energy + Delta-G solvation = -26321.006248 eV Core-core repulsion = 22300.394665 eV Total energy + Delta-G solvation = -4020.611583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.34521 -38.38038 -37.44913 -36.56823 -36.23420 -34.50154 -33.73791 -33.60404 -32.98255 -31.04407 -29.47707 -27.14187 -25.29239 -24.64336 -22.66176 -21.98202 -21.68338 -20.28905 -19.34836 -18.66743 -17.86797 -17.63720 -16.97671 -16.86453 -16.37086 -16.06802 -15.38536 -15.05475 -14.93618 -14.78335 -14.60386 -14.07819 -13.86808 -13.73975 -13.31828 -13.20712 -13.06276 -12.94824 -12.55273 -12.52612 -12.45150 -12.43740 -12.20964 -12.14447 -11.86928 -11.60225 -11.30265 -11.21622 -10.87239 -10.82929 -10.31384 -9.98106 -9.77192 -9.43170 -9.14511 -9.05388 -8.49249 -7.88782 -7.36679 -7.25107 -4.73482 -0.58279 2.21060 2.39793 2.62374 2.70613 3.10222 3.38857 3.46283 3.48073 3.64264 3.90197 3.97851 4.02414 4.03317 4.29173 4.34508 4.36830 4.42386 4.60985 4.62432 4.82239 4.95904 5.01396 5.07187 5.16300 5.36568 5.53209 5.56247 5.59209 5.86006 6.10807 6.26319 6.43890 6.57172 6.67789 6.88849 7.19182 7.34945 7.46353 7.64687 7.78862 7.91616 8.20848 8.35508 8.64847 8.73776 9.46742 9.99378 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022732 B = 0.001994 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.447016 B =14039.412642 C =14997.431218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.615 4.615 3 S 2.417 3.583 4 O -0.935 6.935 5 O -0.935 6.935 6 C -0.610 4.610 7 C -0.126 4.126 8 C 0.148 3.852 9 N -0.749 5.749 10 C 0.710 3.290 11 O -0.564 6.564 12 N -0.666 5.666 13 C 0.400 3.600 14 C -0.310 4.310 15 C -0.036 4.036 16 C -0.280 4.280 17 C 0.276 3.724 18 C -0.482 4.482 19 H 0.084 0.916 20 C 0.049 3.951 21 N -0.805 5.805 22 Si 1.144 2.856 23 H -0.288 1.288 24 H -0.280 1.280 25 H -0.327 1.327 26 N -0.596 5.596 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.398 0.602 39 H 0.404 0.596 40 H 0.140 0.860 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.282 -18.129 -2.510 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.744 4.744 3 S 2.599 3.401 4 O -0.932 6.932 5 O -0.932 6.932 6 C -0.739 4.739 7 C -0.165 4.165 8 C 0.023 3.977 9 N -0.407 5.407 10 C 0.410 3.590 11 O -0.440 6.440 12 N -0.313 5.313 13 C 0.168 3.832 14 C -0.335 4.335 15 C -0.060 4.060 16 C -0.303 4.303 17 C 0.152 3.848 18 C -0.515 4.515 19 H 0.102 0.898 20 C -0.173 4.173 21 N -0.426 5.426 22 Si 0.977 3.023 23 H -0.216 1.216 24 H -0.207 1.207 25 H -0.260 1.260 26 N -0.321 5.321 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.232 0.768 39 H 0.239 0.761 40 H 0.157 0.843 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.803 -16.901 -1.458 29.229 hybrid contribution 2.062 -1.332 -1.188 2.728 sum -21.740 -18.233 -2.647 28.497 Atomic orbital electron populations 1.21524 0.90286 1.04967 1.03861 1.30219 1.07653 1.24852 1.11648 1.08184 0.78143 0.78283 0.75512 1.93609 1.80969 1.73087 1.45526 1.93607 1.80987 1.73097 1.45542 1.30264 1.24695 1.06638 1.12293 1.21516 0.96042 0.93991 1.04971 1.21083 0.89018 0.84467 1.03157 1.45079 1.04888 1.09454 1.81236 1.15668 0.81615 0.83755 0.77961 1.90852 1.63103 1.33947 1.56094 1.42314 1.06443 1.07763 1.74820 1.17782 0.81371 0.91575 0.92507 1.21526 0.94427 1.01327 1.16247 1.20912 0.93919 0.96118 0.95089 1.21595 0.99177 0.95573 1.13943 1.18163 0.85448 0.92438 0.88760 1.20650 0.98581 0.99916 1.32307 0.89836 1.27650 1.06581 0.90901 0.92149 1.70613 1.17709 1.19511 1.34810 0.82123 0.71989 0.74298 0.73861 1.21570 1.20739 1.25970 1.66134 1.11346 1.25409 1.29259 0.90018 0.90742 0.90744 0.84906 0.84898 0.84396 0.84386 0.89207 0.89215 0.90943 0.90951 0.76753 0.76133 0.84258 0.87723 0.87762 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.92 37.16 0.37 -0.18 16 2 C -0.61 -1.55 6.53 37.16 0.24 -1.31 16 3 S 2.42 13.16 4.72 -107.50 -0.51 12.66 16 4 O -0.93 -8.67 18.10 -57.83 -1.05 -9.72 16 5 O -0.94 -8.61 18.10 -57.83 -1.05 -9.66 16 6 C -0.61 -2.20 5.81 37.16 0.22 -1.99 16 7 C -0.13 -0.79 5.34 -26.73 -0.14 -0.93 16 8 C 0.15 1.33 5.67 -4.04 -0.02 1.31 16 9 N -0.75 -8.57 5.56 -65.23 -0.36 -8.94 16 10 C 0.71 11.96 8.40 -86.92 -0.73 11.23 16 11 O -0.56 -11.31 13.14 5.30 0.07 -11.24 16 12 N -0.67 -12.41 5.42 -15.79 -0.09 -12.49 16 13 C 0.40 9.28 7.51 -155.00 -1.16 8.12 16 14 C -0.31 -7.11 8.83 -38.89 -0.34 -7.46 16 15 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 16 C -0.28 -6.78 9.83 -38.66 -0.38 -7.16 16 17 C 0.28 7.32 6.27 -85.00 -0.53 6.79 16 18 C -0.48 -13.22 9.51 -37.73 -0.36 -13.58 16 19 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 20 C 0.05 1.33 5.51 -17.34 -0.10 1.24 16 21 N -0.80 -21.87 13.65 55.55 0.76 -21.11 16 22 Si 1.14 27.71 25.93 -169.99 -4.41 23.31 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.98 6.55 56.52 0.37 -6.61 16 25 H -0.33 -7.80 7.11 56.52 0.40 -7.39 16 26 N -0.60 -15.23 5.07 -10.26 -0.05 -15.28 16 27 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.13 0.07 8.14 -51.92 -0.42 -0.36 16 31 H 0.13 0.07 8.14 -51.92 -0.42 -0.35 16 32 H 0.14 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.14 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.40 3.43 8.49 -40.82 -0.35 3.08 16 39 H 0.40 6.48 8.84 -40.82 -0.36 6.12 16 40 H 0.14 3.13 5.33 -52.50 -0.28 2.85 16 41 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 42 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 43 H 0.28 7.40 8.73 -40.82 -0.36 7.04 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -38.25 374.84 -10.46 -48.71 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.09 Total: 3.23 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -3.34 Total: -5.12 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.26 Total: -57.82 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -2.02 Total: -30.61 kcal Atomic # 14 Polarization: 27.71 SS G_CDS: -4.41 Total: 23.31 kcal Atomic # 16 Polarization: 13.16 SS G_CDS: -0.51 Total: 12.66 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.25 -10.46 -48.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672719400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.621 kcal (2) G-P(sol) polarization free energy of solvation -38.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds