Wall clock time and date at job start Tue Mar 31 2020 23:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46500 * 109.47170 * 175.00049 * 4 2 1 6 6 C 1.46506 * 120.00084 * 270.00261 * 5 4 2 7 7 C 1.34776 * 120.00331 * 90.00159 * 5 4 2 8 8 O 1.21291 * 119.99569 * 359.97438 * 7 5 4 9 9 C 1.50698 * 120.00442 * 180.02562 * 7 5 4 10 10 S 1.81000 * 109.47226 * 179.97438 * 9 7 5 11 11 C 1.76201 * 100.00221 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99634 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00246 * 179.97438 * 11 10 9 14 14 N 1.31624 * 119.99797 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99824 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46956 * 90.00015 * 15 13 11 17 17 H 1.48501 * 109.46829 * 209.99958 * 15 13 11 18 18 H 1.48496 * 109.47169 * 329.99784 * 15 13 11 19 19 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 20 20 C 1.34769 * 119.99686 * 84.99974 * 19 2 1 21 21 O 1.21275 * 120.00678 * 0.02562 * 20 19 2 22 22 C 1.50701 * 119.99690 * 179.97438 * 20 19 2 23 23 C 1.50704 * 109.47153 * 179.97438 * 22 20 19 24 24 C 1.41380 * 126.79646 * 125.00333 * 23 22 20 25 25 C 1.35457 * 103.98167 * 180.02562 * 24 23 22 26 26 O 1.34038 * 106.44715 * 0.02562 * 25 24 23 27 27 N 1.20925 * 111.56556 * 359.70663 * 26 25 24 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 32 32 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 33 33 H 1.08998 * 109.47133 * 89.99759 * 6 5 4 34 34 H 1.08995 * 109.46905 * 209.99760 * 6 5 4 35 35 H 1.08998 * 109.47001 * 329.99946 * 6 5 4 36 36 H 1.08997 * 109.47199 * 299.99906 * 9 7 5 37 37 H 1.08998 * 109.47329 * 59.99697 * 9 7 5 38 38 H 0.97002 * 120.00489 * 180.02562 * 14 13 11 39 39 H 0.97000 * 119.99634 * 265.00306 * 19 2 1 40 40 H 1.08996 * 109.47353 * 300.00507 * 22 20 19 41 41 H 1.09006 * 109.47337 * 60.00072 * 22 20 19 42 42 H 1.07997 * 128.01422 * 359.96279 * 24 23 22 43 43 H 1.08004 * 126.77312 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1258 -1.9920 0.5613 7 6 4.2675 0.1491 1.7157 8 8 3.7494 1.1144 2.2363 9 6 5.7694 0.0413 1.6550 10 16 6.5109 1.4953 2.4374 11 6 8.2192 1.1161 2.2309 12 1 8.5136 0.2017 1.7374 13 6 9.1866 1.9932 2.7016 14 7 8.8278 3.1079 3.3026 15 14 10.9976 1.5914 2.4820 16 1 11.4753 2.1489 1.1912 17 1 11.7757 2.1883 3.5972 18 1 11.1815 0.1179 2.4832 19 7 2.0184 -0.6906 -1.1962 20 6 2.1472 -0.0183 -2.3570 21 8 1.8592 1.1585 -2.4115 22 6 2.6501 -0.7285 -3.5873 23 6 2.7001 0.2396 -4.7412 24 6 3.8213 0.5362 -5.5498 25 6 3.3558 1.4535 -6.4310 26 8 2.0649 1.6498 -6.1281 27 7 1.7186 0.9652 -5.1934 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7516 -0.1583 2.1369 32 1 1.6053 -1.7198 1.2952 33 1 4.2798 -1.7933 -0.4993 34 1 5.0863 -2.1898 1.0371 35 1 3.4769 -2.8600 0.6779 36 1 6.0907 -0.8580 2.1804 37 1 6.0880 -0.0129 0.6140 38 1 9.5038 3.7210 3.6312 39 1 2.2491 -1.6318 -1.1525 40 1 3.6494 -1.1204 -3.3977 41 1 1.9779 -1.5509 -3.8325 42 1 4.8183 0.1270 -5.4804 43 1 3.9147 1.9328 -7.2212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001679907395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:52 Heat of formation + Delta-G solvation = -5.812553 kcal Electronic energy + Delta-G solvation = -27115.190014 eV Core-core repulsion = 23097.636475 eV Total energy + Delta-G solvation = -4017.553539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.09197 -40.25545 -39.25913 -36.50320 -34.84906 -34.44127 -32.44468 -32.10031 -31.74018 -29.66963 -29.10302 -27.32855 -25.71428 -25.24865 -23.36323 -22.78171 -21.26622 -20.46396 -19.36830 -18.00380 -17.87848 -17.71502 -17.11247 -16.77846 -16.30238 -15.93293 -15.63639 -15.24605 -14.85417 -14.81994 -14.09135 -14.01402 -13.66668 -13.60903 -13.33446 -13.22090 -13.01596 -12.86545 -12.64381 -12.59414 -12.33819 -12.17114 -12.02607 -11.81004 -11.46620 -11.21753 -11.08128 -11.04112 -10.77813 -10.43095 -9.92123 -9.82723 -9.78604 -9.45907 -9.27752 -9.08140 -8.58455 -8.24097 -6.51665 -6.22862 -3.93755 1.36548 1.98592 2.51207 2.82834 2.97438 3.03885 3.12964 3.20687 3.24039 3.28535 3.56700 3.84836 4.18514 4.27647 4.55422 4.66468 4.74692 4.84539 4.93703 4.95392 5.00496 5.05559 5.12078 5.14640 5.23981 5.26233 5.34851 5.45755 5.49331 5.50906 5.58708 5.67634 5.76480 5.85768 5.92892 6.02724 6.08398 6.33438 6.55039 7.29186 7.43017 7.57538 8.09323 8.12105 8.33268 8.50155 9.22097 10.84562 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009862 B = 0.002915 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.428412 B = 9604.830776 C =11528.263478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 H 0.096 0.904 4 C 0.111 3.889 5 N -0.624 5.624 6 C 0.078 3.922 7 C 0.533 3.467 8 O -0.511 6.511 9 C -0.149 4.149 10 S -0.061 6.061 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.722 5.722 20 C 0.514 3.486 21 O -0.519 6.519 22 C -0.062 4.062 23 C 0.023 3.977 24 C -0.228 4.228 25 C -0.062 4.062 26 O 0.103 5.897 27 N -0.338 5.338 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.269 0.731 39 H 0.396 0.604 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.173 0.827 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.111 -14.938 -16.220 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.360 5.360 6 C -0.065 4.065 7 C 0.321 3.679 8 O -0.385 6.385 9 C -0.300 4.300 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.375 5.375 20 C 0.299 3.701 21 O -0.393 6.393 22 C -0.102 4.102 23 C -0.137 4.137 24 C -0.249 4.249 25 C -0.143 4.143 26 O 0.034 5.966 27 N -0.039 5.039 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.230 0.770 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.190 0.810 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -15.319 -12.326 -15.011 24.737 hybrid contribution 2.958 -2.152 -0.886 3.763 sum -12.361 -14.478 -15.898 24.802 Atomic orbital electron populations 1.22100 0.94641 1.01958 1.03102 1.21468 0.94057 0.98791 0.83775 0.88623 1.21749 0.80274 1.01117 0.98102 1.47803 1.05643 1.22236 1.60287 1.21830 0.99458 0.87508 0.97750 1.20369 0.89029 0.81640 0.76841 1.90711 1.74610 1.30453 1.42711 1.23541 0.93577 1.07409 1.05442 1.85451 1.02292 1.21079 1.74595 1.22844 0.91071 1.09721 1.44754 0.90989 1.24993 0.99595 0.94476 0.94509 1.70015 1.34293 1.09827 1.36044 0.86171 0.82713 0.78599 0.78031 1.20266 1.20730 1.19699 1.45983 1.68184 1.13688 1.09625 1.20269 0.78105 0.87552 0.84223 1.90784 1.48387 1.15645 1.84506 1.19987 1.04799 0.96440 0.89021 1.22829 0.90428 1.00660 0.99789 1.22718 1.01241 1.02855 0.98102 1.26010 0.85587 1.00262 1.02490 1.84868 1.25559 1.49234 1.36955 1.73871 1.23897 1.05704 1.00406 0.91192 0.91829 0.92504 0.88216 0.90260 0.93036 0.90389 0.91286 0.89270 0.89443 0.92155 0.76989 0.86596 0.87100 0.81000 0.76710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 2 C 0.12 1.44 2.88 -67.93 -0.20 1.24 16 3 H 0.10 1.56 7.58 -51.93 -0.39 1.17 16 4 C 0.11 1.18 5.07 -4.04 -0.02 1.16 16 5 N -0.62 -7.91 2.73 -181.57 -0.50 -8.40 16 6 C 0.08 0.65 9.02 59.85 0.54 1.19 16 7 C 0.53 9.88 7.69 -10.99 -0.08 9.80 16 8 O -0.51 -11.59 15.44 5.55 0.09 -11.50 16 9 C -0.15 -2.98 4.71 36.00 0.17 -2.81 16 10 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 11 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 12 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 15 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 19 N -0.72 -6.90 4.35 -53.80 -0.23 -7.14 16 20 C 0.51 6.29 7.79 -10.99 -0.09 6.20 16 21 O -0.52 -9.16 15.26 5.56 0.08 -9.07 16 22 C -0.06 -0.53 6.30 -29.03 -0.18 -0.71 16 23 C 0.02 0.25 6.10 -82.10 -0.50 -0.25 16 24 C -0.23 -2.01 11.12 -39.38 -0.44 -2.44 16 25 C -0.06 -0.50 12.30 29.74 0.37 -0.13 16 26 O 0.10 1.19 11.20 17.18 0.19 1.38 16 27 N -0.34 -4.59 11.48 33.42 0.38 -4.21 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 1.23 7.42 -51.93 -0.39 0.85 16 32 H 0.08 0.56 7.89 -51.93 -0.41 0.15 16 33 H 0.05 0.37 7.39 -51.93 -0.38 -0.01 16 34 H 0.08 0.70 6.44 -51.93 -0.33 0.37 16 35 H 0.07 0.35 7.89 -51.93 -0.41 -0.06 16 36 H 0.09 1.62 7.40 -51.92 -0.38 1.24 16 37 H 0.09 1.64 8.11 -51.92 -0.42 1.22 16 38 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.40 2.40 7.07 -40.82 -0.29 2.11 16 40 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.22 0.72 8.06 -52.48 -0.42 0.29 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -40.53 382.70 -6.51 -47.04 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.91 Total: 0.07 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 0.12 Total: -0.84 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.39 Total: -45.21 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.36 Total: -19.19 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -40.53 -6.51 -47.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679907395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.228 kcal (2) G-P(sol) polarization free energy of solvation -40.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds