Wall clock time and date at job start Tue Mar 31 2020 23:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47121 * 2 1 4 4 C 1.52996 * 109.46903 * 240.00238 * 2 1 3 5 5 N 1.46499 * 109.47198 * 184.99592 * 4 2 1 6 6 C 1.46499 * 120.00136 * 270.00278 * 5 4 2 7 7 C 1.34784 * 119.99893 * 90.00083 * 5 4 2 8 8 O 1.21283 * 119.99649 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99774 * 179.72962 * 7 5 4 10 10 S 1.81008 * 109.46759 * 180.02562 * 9 7 5 11 11 C 1.76198 * 99.99946 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99996 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00252 * 179.97438 * 11 10 9 14 14 N 1.31635 * 119.99702 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00159 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47247 * 59.99814 * 15 13 11 17 17 H 1.48504 * 109.46907 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47096 * 299.99984 * 15 13 11 19 19 N 1.46501 * 109.47261 * 120.00110 * 2 1 3 20 20 C 1.34773 * 119.99835 * 274.99925 * 19 2 1 21 21 O 1.21280 * 120.00368 * 359.97438 * 20 19 2 22 22 C 1.50701 * 119.99615 * 180.02562 * 20 19 2 23 23 C 1.50698 * 109.46925 * 179.97438 * 22 20 19 24 24 C 1.41388 * 126.79914 * 125.00144 * 23 22 20 25 25 C 1.35454 * 103.98370 * 179.97438 * 24 23 22 26 26 O 1.34046 * 106.44683 * 359.97438 * 25 24 23 27 27 N 1.20924 * 111.56270 * 359.71017 * 26 25 24 28 28 H 1.08999 * 109.47144 * 299.99776 * 1 2 3 29 29 H 1.08996 * 109.47386 * 60.00007 * 1 2 3 30 30 H 1.09000 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47172 * 64.99829 * 4 2 1 32 32 H 1.08998 * 109.47554 * 304.99825 * 4 2 1 33 33 H 1.08999 * 109.47256 * 269.99572 * 6 5 4 34 34 H 1.08998 * 109.47416 * 29.99674 * 6 5 4 35 35 H 1.09008 * 109.47058 * 150.00274 * 6 5 4 36 36 H 1.09001 * 109.46809 * 299.99238 * 9 7 5 37 37 H 1.08993 * 109.47525 * 59.99679 * 9 7 5 38 38 H 0.97000 * 119.99806 * 179.97438 * 14 13 11 39 39 H 0.97004 * 119.99511 * 94.99856 * 19 2 1 40 40 H 1.09004 * 109.47005 * 299.99720 * 22 20 19 41 41 H 1.08996 * 109.47401 * 60.00141 * 22 20 19 42 42 H 1.07997 * 128.00707 * 0.02871 * 24 23 22 43 43 H 1.07998 * 126.77802 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.3342 0.2342 -1.7614 7 6 4.0758 -1.8986 -0.6117 8 8 3.3851 -2.7767 -0.1397 9 6 5.5777 -2.0096 -0.5569 10 16 6.0388 -3.5497 0.2749 11 6 7.7947 -3.4240 0.1999 12 1 8.2552 -2.5659 -0.2670 13 6 8.5861 -4.4278 0.7408 14 7 8.0248 -5.4735 1.3103 15 14 10.4476 -4.2943 0.6619 16 1 10.8866 -3.0679 1.3750 17 1 11.0571 -5.4863 1.3046 18 1 10.8790 -4.2228 -0.7573 19 7 2.0184 -0.6906 1.1962 20 6 2.1471 -0.0183 2.3571 21 8 1.8592 1.1586 2.4115 22 6 2.6501 -0.7286 3.5874 23 6 2.7013 0.2398 4.7408 24 6 2.0812 0.0879 6.0024 25 6 2.4251 1.2130 6.6737 26 8 3.1843 1.9362 5.8386 27 7 3.3309 1.3785 4.7757 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7516 -0.1582 -2.1369 32 1 1.6054 -1.7197 -1.2952 33 1 4.5424 0.0095 -2.8074 34 1 3.8090 1.1868 -1.6919 35 1 5.2722 0.2953 -1.2094 36 1 5.9791 -2.0103 -1.5703 37 1 5.9848 -1.1623 -0.0054 38 1 8.5778 -6.1752 1.6879 39 1 2.2491 -1.6318 1.1525 40 1 1.9778 -1.5509 3.8324 41 1 3.6494 -1.1204 3.3978 42 1 1.4746 -0.7350 6.3504 43 1 2.1433 1.4755 7.6827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001679907396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:54 Heat of formation + Delta-G solvation = -8.860149 kcal Electronic energy + Delta-G solvation = -27531.259783 eV Core-core repulsion = 23513.574090 eV Total energy + Delta-G solvation = -4017.685693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.92474 -40.24056 -39.15937 -36.30645 -34.79646 -34.45921 -32.47090 -31.86932 -31.51372 -29.64484 -28.91011 -27.33538 -25.72346 -25.26257 -23.20353 -22.66107 -21.08759 -20.20919 -19.35564 -17.84503 -17.77190 -17.63540 -17.04325 -16.58060 -16.47080 -15.88444 -15.32771 -15.14606 -14.83952 -14.83274 -14.10630 -13.75191 -13.67347 -13.36851 -13.24284 -13.14786 -12.94264 -12.86435 -12.60455 -12.49073 -12.27148 -12.18556 -12.00181 -11.77170 -11.29122 -11.19323 -11.08575 -11.06674 -10.80155 -10.24088 -9.86512 -9.75688 -9.61632 -9.52943 -9.09884 -9.07639 -8.61104 -8.31360 -6.56033 -6.26272 -3.97271 1.52432 2.19158 2.69251 2.81521 2.88160 3.19863 3.21179 3.24116 3.26481 3.32315 3.54557 4.09634 4.16365 4.49503 4.64802 4.72337 4.89363 5.00730 5.07385 5.09439 5.09894 5.15958 5.19605 5.25102 5.29653 5.37824 5.49885 5.52890 5.54490 5.60830 5.65517 5.66715 5.83054 5.86306 5.96369 6.04097 6.07548 6.41152 6.61815 7.38349 7.55540 7.60903 8.28509 8.30794 8.31612 8.41215 9.19630 10.81032 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008679 B = 0.003573 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.372916 B = 7834.368796 C =10139.909154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.127 3.873 3 H 0.086 0.914 4 C 0.106 3.894 5 N -0.621 5.621 6 C 0.079 3.921 7 C 0.540 3.460 8 O -0.524 6.524 9 C -0.153 4.153 10 S -0.058 6.058 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.076 3.924 14 N -0.868 5.868 15 Si 0.917 3.083 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.274 1.274 19 N -0.720 5.720 20 C 0.520 3.480 21 O -0.538 6.538 22 C -0.068 4.068 23 C 0.029 3.971 24 C -0.228 4.228 25 C -0.068 4.068 26 O 0.103 5.897 27 N -0.336 5.336 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.414 0.586 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.171 0.829 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.727 12.104 2.087 19.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.021 3.979 3 H 0.104 0.896 4 C -0.017 4.017 5 N -0.356 5.356 6 C -0.064 4.064 7 C 0.329 3.671 8 O -0.399 6.399 9 C -0.304 4.304 10 S 0.169 5.831 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.134 4.134 14 N -0.503 5.503 15 Si 0.743 3.257 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.377 5.377 20 C 0.305 3.695 21 O -0.414 6.414 22 C -0.108 4.108 23 C -0.130 4.130 24 C -0.249 4.249 25 C -0.150 4.150 26 O 0.033 5.967 27 N -0.037 5.037 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.254 0.746 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.189 0.811 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -15.142 12.126 1.996 19.502 hybrid contribution 1.597 0.072 -0.190 1.610 sum -13.545 12.199 1.807 18.318 Atomic orbital electron populations 1.22115 0.94773 1.02449 1.02589 1.21371 0.94147 0.97723 0.84689 0.89603 1.21795 0.80535 1.02579 0.96823 1.47847 1.06001 1.21979 1.59736 1.21802 0.95860 0.90104 0.98647 1.20365 0.90366 0.80227 0.76182 1.90587 1.64464 1.38932 1.45959 1.23579 0.93457 1.07555 1.05770 1.85264 1.05802 1.18342 1.73735 1.22815 0.91033 1.09917 1.44727 0.91015 1.24967 0.99543 0.94445 0.94422 1.69998 1.36044 1.08668 1.35571 0.86245 0.83018 0.77839 0.78560 1.19899 1.20764 1.19913 1.46295 1.67120 1.15451 1.08875 1.20276 0.77530 0.87217 0.84484 1.90701 1.49884 1.15731 1.85132 1.20024 1.05549 0.96219 0.89040 1.22870 0.99084 0.94627 0.96438 1.22695 1.06626 1.01616 0.93997 1.25960 0.97596 0.92563 0.98832 1.84877 1.52927 1.41253 1.17619 1.73894 1.19758 1.08900 1.01179 0.91881 0.91591 0.92067 0.89149 0.89038 0.92438 0.91277 0.90608 0.89182 0.89241 0.92111 0.74606 0.86552 0.86232 0.81127 0.76904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 2 C 0.13 1.47 2.88 -67.93 -0.20 1.27 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 4 C 0.11 1.14 5.14 -4.04 -0.02 1.12 16 5 N -0.62 -8.06 2.77 -181.57 -0.50 -8.56 16 6 C 0.08 0.81 10.24 59.85 0.61 1.43 16 7 C 0.54 9.29 6.99 -10.98 -0.08 9.21 16 8 O -0.52 -10.18 13.18 5.56 0.07 -10.11 16 9 C -0.15 -2.98 4.71 36.00 0.17 -2.81 16 10 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 11 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 12 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 13 C 0.08 2.11 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -25.52 13.22 55.49 0.73 -24.78 16 15 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 N -0.72 -9.83 4.48 -53.81 -0.24 -10.07 16 20 C 0.52 7.85 7.79 -10.99 -0.09 7.76 16 21 O -0.54 -9.70 15.27 5.56 0.08 -9.62 16 22 C -0.07 -0.90 6.30 -29.04 -0.18 -1.09 16 23 C 0.03 0.41 6.09 -82.10 -0.50 -0.09 16 24 C -0.23 -2.38 11.12 -39.38 -0.44 -2.82 16 25 C -0.07 -0.63 12.30 29.74 0.37 -0.26 16 26 O 0.10 1.36 11.20 17.16 0.19 1.55 16 27 N -0.34 -5.40 11.48 33.42 0.38 -5.01 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.09 1.06 7.42 -51.93 -0.39 0.68 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 35 H 0.08 0.84 6.44 -51.92 -0.33 0.50 16 36 H 0.09 1.65 8.11 -51.91 -0.42 1.23 16 37 H 0.09 1.67 7.39 -51.92 -0.38 1.28 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.41 6.03 5.83 -40.82 -0.24 5.79 16 40 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -36.54 381.07 -6.49 -43.03 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.92 Total: 5.53 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 0.20 Total: -0.09 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.37 Total: -48.43 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.35 Total: -18.18 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.54 -6.49 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679907396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.169 kcal (2) G-P(sol) polarization free energy of solvation -36.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds