Wall clock time and date at job start Tue Mar 31 2020 23:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08996 * 109.46928 * 2 1 4 4 C 1.52997 * 109.47319 * 120.00711 * 2 1 3 5 5 C 1.52992 * 109.47448 * 184.99927 * 4 2 1 6 6 H 1.08998 * 109.46862 * 305.00378 * 5 4 2 7 7 C 1.52997 * 109.47482 * 184.99813 * 5 4 2 8 8 N 1.46506 * 109.46999 * 64.99463 * 5 4 2 9 9 C 1.34777 * 120.00033 * 205.00067 * 8 5 4 10 10 O 1.21493 * 119.99928 * 0.02562 * 9 8 5 11 11 C 1.48326 * 119.99884 * 180.02562 * 9 8 5 12 12 C 1.42272 * 126.93589 * 180.02562 * 11 9 8 13 13 C 1.35317 * 103.92253 * 180.02562 * 12 11 9 14 14 O 1.34010 * 106.66699 * 0.02562 * 13 12 11 15 15 N 1.20905 * 111.84846 * 359.70662 * 14 13 12 16 16 N 1.46500 * 109.46638 * 240.00390 * 2 1 3 17 17 C 1.34778 * 120.00057 * 85.00026 * 16 2 1 18 18 O 1.21285 * 119.99833 * 0.02562 * 17 16 2 19 19 C 1.50701 * 120.00225 * 179.97438 * 17 16 2 20 20 S 1.80995 * 109.47334 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00251 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99852 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00089 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99788 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99585 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47097 * 60.00010 * 25 23 21 27 27 H 1.48501 * 109.46654 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47154 * 299.99545 * 25 23 21 29 29 H 1.08994 * 109.46665 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46761 * 299.99274 * 1 2 3 31 31 H 1.08993 * 109.46916 * 59.99508 * 1 2 3 32 32 H 1.09001 * 109.47166 * 64.99160 * 4 2 1 33 33 H 1.09004 * 109.46717 * 305.00112 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 7 5 4 35 35 H 1.09001 * 109.46832 * 299.99974 * 7 5 4 36 36 H 1.09004 * 109.47261 * 179.97438 * 7 5 4 37 37 H 0.96992 * 120.00062 * 25.00521 * 8 5 4 38 38 H 1.08004 * 128.04199 * 0.02562 * 12 11 9 39 39 H 1.08000 * 126.66749 * 179.97438 * 13 12 11 40 40 H 0.97004 * 119.99986 * 264.99564 * 16 2 1 41 41 H 1.09008 * 109.47175 * 300.00509 * 19 17 16 42 42 H 1.08997 * 109.46813 * 59.99824 * 19 17 16 43 43 H 0.97000 * 119.99785 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.6135 1.3136 6 1 3.9954 -0.9923 0.3866 7 6 4.0853 -1.4386 2.4923 8 7 3.9480 0.7893 1.4924 9 6 5.1613 1.2134 1.0867 10 8 5.9370 0.4326 0.5722 11 6 5.5494 2.6335 1.2683 12 6 6.7831 3.2368 0.8968 13 6 6.6393 4.5291 1.2713 14 8 5.4179 4.6391 1.8116 15 7 4.8239 3.5861 1.7991 16 7 2.0183 -0.6905 -1.1962 17 6 2.1470 -0.0181 -2.3572 18 8 1.8590 1.1588 -2.4114 19 6 2.6497 -0.7283 -3.5876 20 16 2.7112 0.4349 -4.9729 21 6 3.3140 -0.6302 -6.2404 22 1 3.5234 -1.6666 -6.0205 23 6 3.5209 -0.1370 -7.5213 24 7 3.2662 1.1263 -7.7891 25 14 4.1607 -1.2662 -8.8648 26 1 3.2094 -2.3893 -9.0621 27 1 4.2937 -0.5025 -10.1314 28 1 5.4869 -1.8043 -8.4692 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.7517 -1.7716 1.2054 33 1 1.6055 -0.2619 2.1369 34 1 3.8002 -2.4822 2.3592 35 1 3.6547 -1.0596 3.4192 36 1 5.1717 -1.3620 2.5379 37 1 3.3286 1.4126 1.9028 38 1 7.6362 2.7715 0.4255 39 1 7.3677 5.3184 1.1577 40 1 2.2490 -1.6317 -1.1528 41 1 3.6491 -1.1202 -3.3981 42 1 1.9775 -1.5505 -3.8327 43 1 3.4111 1.4710 -8.6841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681538552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:55 Heat of formation + Delta-G solvation = -19.897854 kcal Electronic energy + Delta-G solvation = -27161.357460 eV Core-core repulsion = 23143.193137 eV Total energy + Delta-G solvation = -4018.164323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.32484 -40.19920 -39.23859 -37.00414 -34.75368 -34.24650 -32.40435 -32.34842 -31.65389 -30.82137 -28.51815 -27.08729 -25.45343 -25.27146 -23.24575 -22.17924 -21.30212 -20.81107 -20.18046 -18.81201 -17.98341 -17.81912 -17.13869 -16.63384 -16.30425 -15.95364 -15.15675 -14.87841 -14.78702 -14.76725 -14.30725 -14.04424 -13.98435 -13.64768 -13.61420 -13.16830 -12.93459 -12.72596 -12.59234 -12.41386 -12.31629 -11.97539 -11.92679 -11.58506 -11.18243 -11.01619 -11.01355 -10.95605 -10.73962 -10.69652 -10.45385 -10.03435 -9.79503 -9.39135 -9.34404 -9.03586 -8.87548 -8.20735 -6.46463 -6.18730 -3.88876 0.89262 1.46776 2.62967 2.90137 2.99143 3.06897 3.14259 3.25714 3.29379 3.33644 3.70085 3.75247 4.23375 4.24506 4.39164 4.54049 4.77746 4.81639 4.99853 5.06938 5.13115 5.16252 5.16553 5.21952 5.25281 5.34106 5.42392 5.49057 5.60723 5.61009 5.69210 5.75279 5.90128 5.93113 6.01320 6.17027 6.17613 6.19626 6.69493 7.11558 7.62129 7.70769 7.74301 7.89424 8.37973 8.66074 9.26460 10.88727 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.003007 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.938105 B = 9309.978559 C =10747.335333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.087 0.913 4 C -0.136 4.136 5 C 0.139 3.861 6 H 0.097 0.903 7 C -0.163 4.163 8 N -0.709 5.709 9 C 0.602 3.398 10 O -0.516 6.516 11 C -0.027 4.027 12 C -0.183 4.183 13 C -0.058 4.058 14 O 0.122 5.878 15 N -0.332 5.332 16 N -0.734 5.734 17 C 0.534 3.466 18 O -0.517 6.517 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.405 0.595 38 H 0.182 0.818 39 H 0.226 0.774 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 -0.265 25.200 25.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.105 0.895 4 C -0.174 4.174 5 C 0.035 3.965 6 H 0.115 0.885 7 C -0.222 4.222 8 N -0.361 5.361 9 C 0.386 3.614 10 O -0.389 6.389 11 C -0.186 4.186 12 C -0.205 4.205 13 C -0.138 4.138 14 O 0.046 5.954 15 N -0.033 5.033 16 N -0.388 5.388 17 C 0.320 3.680 18 O -0.391 6.391 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.240 0.760 38 H 0.200 0.800 39 H 0.242 0.758 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.130 1.233 25.100 25.156 hybrid contribution 1.377 -2.392 -1.044 2.951 sum 2.506 -1.159 24.057 24.215 Atomic orbital electron populations 1.22183 0.95196 1.02092 1.02714 1.20879 0.94017 0.97763 0.83742 0.89470 1.22254 0.94044 1.02666 0.98429 1.21094 0.94653 0.80432 1.00281 0.88541 1.22189 1.02180 0.99984 0.97811 1.45871 1.16270 1.11705 1.62246 1.16841 0.82221 0.84226 0.78139 1.90825 1.51203 1.54233 1.42642 1.23584 0.94202 0.96187 1.04662 1.22819 0.99539 0.93443 1.04727 1.26065 0.88617 0.99492 0.99661 1.84781 1.23961 1.27844 1.58828 1.74142 1.19631 0.92327 1.17229 1.46081 1.69445 1.13787 1.09523 1.20290 0.76690 0.87219 0.83785 1.90693 1.48306 1.15725 1.84417 1.23536 1.03648 1.04836 0.98438 1.85362 1.86262 1.12975 0.98714 1.22836 1.51042 0.98125 0.96389 0.91006 1.24980 0.95088 0.95525 0.97918 1.70008 1.45558 1.13213 1.21583 0.86233 0.79353 0.80029 0.79951 1.19947 1.20807 1.19914 0.92478 0.91958 0.91571 0.89303 0.89706 0.91202 0.92341 0.91900 0.75973 0.80049 0.75786 0.76974 0.89289 0.89290 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.48 37.16 0.35 -1.37 16 2 C 0.14 1.59 2.52 -67.93 -0.17 1.42 16 3 H 0.09 1.21 7.05 -51.93 -0.37 0.85 16 4 C -0.14 -1.01 4.29 -26.74 -0.11 -1.13 16 5 C 0.14 1.32 2.52 -67.93 -0.17 1.15 16 6 H 0.10 1.15 7.05 -51.93 -0.37 0.78 16 7 C -0.16 -1.28 9.48 37.16 0.35 -0.92 16 8 N -0.71 -7.71 4.45 -54.60 -0.24 -7.95 16 9 C 0.60 8.30 7.81 -12.11 -0.09 8.20 16 10 O -0.52 -8.60 16.61 5.37 0.09 -8.51 16 11 C -0.03 -0.34 7.19 -82.53 -0.59 -0.93 16 12 C -0.18 -1.84 10.99 -39.07 -0.43 -2.27 16 13 C -0.06 -0.41 12.28 29.69 0.36 -0.05 16 14 O 0.12 1.17 11.18 17.26 0.19 1.36 16 15 N -0.33 -3.90 11.84 33.29 0.39 -3.51 16 16 N -0.73 -9.83 4.45 -53.80 -0.24 -10.07 16 17 C 0.53 10.23 7.81 -10.98 -0.09 10.15 16 18 O -0.52 -11.98 15.52 5.55 0.09 -11.90 16 19 C -0.15 -3.23 6.16 36.01 0.22 -3.01 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 21 C -0.54 -15.61 9.50 30.94 0.29 -15.32 16 22 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 23 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 24 N -0.87 -26.59 13.22 55.49 0.73 -25.86 16 25 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.41 3.83 8.36 -40.82 -0.34 3.49 16 38 H 0.18 1.61 8.06 -52.48 -0.42 1.19 16 39 H 0.23 0.50 8.06 -52.49 -0.42 0.07 16 40 H 0.40 4.19 8.60 -40.82 -0.35 3.84 16 41 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 42 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -38.44 388.98 -6.57 -45.01 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.04 Total: 4.71 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.17 Total: -2.03 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.65 Total: -47.39 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.37 Total: -19.05 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.44 -6.57 -45.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681538552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.114 kcal (2) G-P(sol) polarization free energy of solvation -38.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds