Wall clock time and date at job start Tue Mar 31 2020 23:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99571 * 2 1 4 4 H 1.08999 * 110.78606 * 26.76253 * 3 2 1 5 5 C 1.54338 * 110.84923 * 263.69307 * 3 2 1 6 6 N 1.47024 * 107.26305 * 219.67689 * 5 3 2 7 7 C 1.34778 * 125.64355 * 178.84813 * 6 5 3 8 8 O 1.21278 * 119.99595 * 184.97914 * 7 6 5 9 9 C 1.50700 * 120.00251 * 4.70729 * 7 6 5 10 10 H 1.08993 * 109.46819 * 326.21932 * 9 7 6 11 11 C 1.53006 * 109.46632 * 86.21456 * 9 7 6 12 12 C 1.47202 * 109.47279 * 206.21411 * 9 7 6 13 13 N 7.57729 * 123.62701 * 297.94704 * 2 1 3 14 14 C 1.47423 * 108.70462 * 358.58408 * 6 5 3 15 15 C 1.54909 * 104.83119 * 24.36037 * 14 6 5 16 16 H 1.08995 * 111.00778 * 81.06028 * 15 14 6 17 17 N 1.46500 * 111.00331 * 204.87730 * 15 14 6 18 18 C 1.34777 * 120.00054 * 273.54942 * 17 15 14 19 19 O 1.21277 * 119.99990 * 359.97438 * 18 17 15 20 20 C 1.50701 * 120.00118 * 180.02562 * 18 17 15 21 21 S 1.80996 * 109.47068 * 179.97438 * 20 18 17 22 22 C 1.76204 * 100.00001 * 179.97438 * 21 20 18 23 23 H 1.07996 * 120.00028 * 359.97438 * 22 21 20 24 24 C 1.38798 * 119.99845 * 179.97438 * 22 21 20 25 25 N 1.31628 * 120.00227 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99693 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47119 * 60.00093 * 26 24 22 28 28 H 1.48503 * 109.46959 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47189 * 300.00220 * 26 24 22 30 30 H 1.09000 * 109.47180 * 59.99781 * 1 2 3 31 31 H 1.09002 * 109.46766 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46663 * 299.99990 * 1 2 3 33 33 H 1.08999 * 109.98748 * 100.20107 * 5 3 2 34 34 H 1.09002 * 109.77533 * 339.02966 * 5 3 2 35 35 H 1.09007 * 109.46784 * 184.94365 * 11 9 7 36 36 H 1.08993 * 109.47332 * 304.93877 * 11 9 7 37 37 H 1.08990 * 109.47253 * 64.94878 * 11 9 7 38 38 H 1.09002 * 110.36509 * 143.19263 * 14 6 5 39 39 H 1.09001 * 110.36920 * 265.51739 * 14 6 5 40 40 H 0.97003 * 119.99921 * 93.53816 * 17 15 14 41 41 H 1.09003 * 109.46788 * 299.99219 * 20 18 17 42 42 H 1.08995 * 109.47721 * 59.98934 * 20 18 17 43 43 H 0.97002 * 119.99733 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3362 2.0289 0.4589 5 6 2.3783 1.7429 -1.4336 6 7 3.6684 2.4440 -1.3581 7 6 4.3431 2.9621 -2.4035 8 8 5.4446 3.4415 -2.2368 9 6 3.7314 2.9403 -3.7806 10 1 3.1293 2.0392 -3.8964 11 6 2.8444 4.1735 -3.9642 12 6 4.8003 2.9497 -4.7926 13 7 5.6252 2.9569 -5.5735 14 6 4.0987 2.4919 0.0511 15 6 3.3817 1.2958 0.7255 16 1 3.9158 0.3642 0.5388 17 7 3.2176 1.5247 2.1632 18 6 4.2053 1.1881 3.0162 19 8 5.2297 0.6953 2.5937 20 6 4.0364 1.4231 4.4952 21 16 5.5229 0.8707 5.3675 22 6 5.0643 1.2523 7.0255 23 1 4.1010 1.6951 7.2310 24 6 5.9411 0.9836 8.0674 25 7 7.1150 0.4434 7.8170 26 14 5.4551 1.3888 9.8250 27 1 4.2277 0.6347 10.1856 28 1 6.5577 1.0074 10.7438 29 1 5.1934 2.8458 9.9429 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6142 2.4137 -1.8262 34 1 2.4698 0.8661 -2.0746 35 1 2.3335 4.1137 -4.9252 36 1 2.1070 4.2132 -3.1626 37 1 3.4609 5.0718 -3.9358 38 1 5.1801 2.3746 0.1217 39 1 3.7871 3.4296 0.5113 40 1 2.3982 1.9188 2.5012 41 1 3.8810 2.4863 4.6787 42 1 3.1742 0.8624 4.8561 43 1 7.7276 0.2553 8.5452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001683152287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:03 Heat of formation + Delta-G solvation = -76.623647 kcal Electronic energy + Delta-G solvation = -26723.835095 eV Core-core repulsion = 22703.210956 eV Total energy + Delta-G solvation = -4020.624138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.03060 -39.59997 -38.58683 -37.11676 -36.56780 -34.47917 -33.63428 -32.44527 -30.81867 -29.51541 -28.20210 -27.04492 -25.85419 -25.48234 -23.81271 -21.81463 -20.74728 -20.34702 -18.35575 -17.99713 -17.75829 -17.48259 -16.52547 -16.31640 -15.94348 -15.55082 -15.43266 -15.14820 -14.92496 -14.81969 -14.56222 -14.21300 -13.92299 -13.68473 -13.50039 -13.24071 -13.14037 -13.00684 -12.92376 -12.79256 -12.59157 -12.45392 -12.34575 -12.01821 -12.00313 -11.83645 -11.25994 -11.06644 -11.05270 -10.79606 -10.45232 -10.19647 -9.84972 -9.52891 -9.31161 -9.08246 -9.01451 -8.26732 -6.52401 -6.23028 -3.94222 1.87669 2.03231 2.38410 2.58443 2.83728 2.95322 3.18727 3.22195 3.27256 3.30389 3.36118 3.59888 3.75923 3.99459 4.18449 4.22464 4.26988 4.30362 4.40308 4.71365 4.73894 4.87417 4.91771 4.92884 5.01907 5.02278 5.08436 5.12076 5.14589 5.27337 5.42041 5.53592 5.59846 5.60942 5.77262 5.83068 6.07988 6.39895 6.61154 6.85567 7.13488 7.51368 7.56930 7.57601 8.33079 8.47807 9.22015 10.84267 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.002211 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.564848 B =12660.577645 C =13777.981870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.071 3.929 4 H 0.089 0.911 5 C 0.077 3.923 6 N -0.610 5.610 7 C 0.540 3.460 8 O -0.515 6.515 9 C -0.007 4.007 10 H 0.135 0.865 11 C -0.140 4.140 12 C 0.217 3.783 13 N -0.407 5.407 14 C 0.095 3.905 15 C 0.142 3.858 16 H 0.116 0.884 17 N -0.728 5.728 18 C 0.535 3.465 19 O -0.508 6.508 20 C -0.153 4.153 21 S -0.058 6.058 22 C -0.537 4.537 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.400 0.600 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.074 4.805 -21.199 30.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.283 6.283 3 C 0.011 3.989 4 H 0.107 0.893 5 C -0.047 4.047 6 N -0.346 5.346 7 C 0.325 3.675 8 O -0.389 6.389 9 C -0.031 4.031 10 H 0.152 0.848 11 C -0.199 4.199 12 C -0.102 4.102 13 N -0.082 5.082 14 C -0.028 4.028 15 C 0.034 3.966 16 H 0.133 0.867 17 N -0.382 5.382 18 C 0.322 3.678 19 O -0.381 6.381 20 C -0.304 4.304 21 S 0.169 5.831 22 C -0.685 4.685 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.234 0.766 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.157 4.023 -22.969 28.950 hybrid contribution -2.538 1.148 2.134 3.509 sum -19.695 5.171 -20.835 29.133 Atomic orbital electron populations 1.22911 0.80353 1.03492 1.00211 1.88056 1.20191 1.25455 1.94595 1.23353 0.95181 0.86346 0.93979 0.89295 1.22622 0.85595 0.97777 0.98735 1.48118 1.22232 1.56893 1.07367 1.19617 0.84975 0.78361 0.84523 1.90837 1.18856 1.44817 1.84427 1.18788 0.92256 1.04525 0.87551 0.84781 1.21752 0.98922 0.95030 1.04154 1.28060 0.94025 0.94053 0.94057 1.81222 1.08412 1.07605 1.10922 1.22761 1.02438 0.98578 0.79049 1.22015 0.94234 0.99401 0.80902 0.86661 1.45829 1.20522 1.66814 1.05079 1.20389 0.82673 0.76725 0.88063 1.90736 1.27501 1.41283 1.78564 1.23524 1.07992 1.05251 0.93584 1.85461 1.14889 1.81378 1.01407 1.22813 1.05480 1.48375 0.91853 0.90952 1.24996 0.94498 0.94622 0.99467 1.70005 1.07263 1.39934 1.32989 0.86224 0.78209 0.78889 0.82167 1.19945 1.20813 1.19936 0.93735 0.89117 0.93505 0.89977 0.89267 0.89959 0.89956 0.90674 0.88399 0.90210 0.76550 0.89080 0.89072 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 10.85 101.05 1.10 1.20 16 2 O -0.37 -2.66 10.44 -35.23 -0.37 -3.03 16 3 C 0.07 0.42 3.06 -24.89 -0.08 0.34 16 4 H 0.09 0.32 7.69 -51.93 -0.40 -0.08 16 5 C 0.08 0.33 5.91 -3.06 -0.02 0.31 16 6 N -0.61 -4.79 3.33 -170.51 -0.57 -5.36 16 7 C 0.54 5.11 6.93 -10.98 -0.08 5.03 16 8 O -0.52 -7.59 16.50 5.56 0.09 -7.50 16 9 C -0.01 -0.04 2.67 -94.56 -0.25 -0.29 16 10 H 0.13 0.26 7.21 -51.93 -0.37 -0.12 16 11 C -0.14 -0.41 9.13 37.16 0.34 -0.07 16 12 C 0.22 2.11 14.03 -20.76 -0.29 1.82 16 13 N -0.41 -5.24 18.54 42.15 0.78 -4.46 16 14 C 0.10 0.97 6.62 -2.53 -0.02 0.95 16 15 C 0.14 1.42 3.04 -65.78 -0.20 1.22 16 16 H 0.12 1.49 7.73 -51.93 -0.40 1.09 16 17 N -0.73 -8.19 5.23 -51.73 -0.27 -8.46 16 18 C 0.54 9.16 7.85 -10.98 -0.09 9.08 16 19 O -0.51 -10.95 15.61 5.56 0.09 -10.86 16 20 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 21 S -0.06 -1.53 20.57 -107.50 -2.21 -3.75 16 22 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 23 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 24 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 25 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 26 Si 0.92 21.10 29.55 -169.99 -5.02 16.07 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 30 H 0.04 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.16 8.11 -51.93 -0.42 -0.26 16 33 H 0.08 0.09 7.75 -51.93 -0.40 -0.32 16 34 H 0.09 0.33 7.82 -51.93 -0.41 -0.08 16 35 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.08 0.09 7.75 -51.93 -0.40 -0.31 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 1.34 7.99 -51.93 -0.41 0.93 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.40 3.15 8.52 -40.82 -0.35 2.80 16 41 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 42 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 389.21 15.07 5.87 5.87 Total: -1.00 -39.70 389.21 -6.12 -45.81 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -6.07 Total: -3.37 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 0.84 Total: 4.23 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.68 Total: -43.48 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.19 Total: -21.39 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.70 -6.12 -45.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683152287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.811 kcal (2) G-P(sol) polarization free energy of solvation -39.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds