Wall clock time and date at job start Tue Mar 31 2020 23:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 119.99803 * 2 1 4 4 N 1.34777 * 119.99675 * 180.27875 * 2 1 3 5 5 C 1.47062 * 136.06053 * 359.34957 * 4 2 1 6 6 C 1.53749 * 87.88863 * 152.96825 * 5 4 2 7 7 N 1.46505 * 114.09025 * 139.78132 * 6 5 4 8 8 C 1.46760 * 124.35271 * 146.28431 * 7 6 5 9 9 C 1.54656 * 105.38469 * 162.85280 * 8 7 6 10 10 H 1.09001 * 110.85144 * 143.78622 * 9 8 7 11 11 N 1.46494 * 111.19573 * 267.59797 * 9 8 7 12 12 C 1.34777 * 119.99899 * 198.86170 * 11 9 8 13 13 O 1.21284 * 119.99873 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00109 * 180.02562 * 12 11 9 15 15 S 1.81000 * 109.47115 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99987 * 179.97438 * 15 14 12 17 17 H 1.08005 * 119.99882 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00283 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99549 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00250 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47194 * 89.99388 * 20 18 16 22 22 H 1.48496 * 109.47398 * 209.99717 * 20 18 16 23 23 H 1.48502 * 109.47168 * 329.99796 * 20 18 16 24 24 C 1.54637 * 101.68188 * 25.77018 * 9 8 7 25 25 C 1.34419 * 124.34683 * 326.58950 * 7 6 5 26 26 O 1.21280 * 124.94189 * 0.42178 * 25 7 6 27 27 C 1.47070 * 136.05212 * 179.73146 * 4 2 1 28 28 H 1.09003 * 109.47157 * 89.99448 * 1 2 3 29 29 H 1.08998 * 109.47436 * 209.99505 * 1 2 3 30 30 H 1.09000 * 109.47527 * 330.00230 * 1 2 3 31 31 H 1.08998 * 113.46736 * 267.69995 * 5 4 2 32 32 H 1.08998 * 113.46422 * 38.13624 * 5 4 2 33 33 H 1.09000 * 114.39692 * 272.68057 * 6 5 4 34 34 H 1.08995 * 110.24729 * 281.98761 * 8 7 6 35 35 H 1.09008 * 110.24021 * 43.98354 * 8 7 6 36 36 H 0.97000 * 120.00504 * 18.86028 * 11 9 8 37 37 H 1.08998 * 109.47042 * 299.99657 * 14 12 11 38 38 H 1.09001 * 109.46907 * 59.99933 * 14 12 11 39 39 H 0.97001 * 119.99781 * 180.02562 * 19 18 16 40 40 H 1.08996 * 110.48839 * 216.30542 * 24 9 8 41 41 H 1.09003 * 110.60075 * 93.71637 * 24 9 8 42 42 H 1.08996 * 113.46675 * 321.85429 * 27 4 2 43 43 H 1.08994 * 113.47148 * 92.30193 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0057 5 6 1.8265 -2.5945 -0.0010 6 6 3.1615 -2.8699 -0.7123 7 7 3.8557 -4.0695 -0.2375 8 6 4.6714 -4.9451 -1.0872 9 6 5.5314 -5.7800 -0.1098 10 1 5.6647 -6.7961 -0.4813 11 7 6.8261 -5.1402 0.1357 12 6 7.8502 -5.8609 0.6341 13 8 7.6996 -7.0390 0.8797 14 6 9.1819 -5.2026 0.8873 15 16 10.3414 -6.4229 1.5525 16 6 11.7711 -5.4118 1.7480 17 1 11.7348 -4.3670 1.4767 18 6 12.9443 -5.9581 2.2495 19 7 12.9887 -7.2316 2.5796 20 14 14.4598 -4.8860 2.4574 21 1 14.4552 -4.2799 3.8131 22 1 15.6799 -5.7158 2.2903 23 1 14.4490 -3.8099 1.4341 24 6 4.6571 -5.7674 1.1656 25 6 3.8226 -4.5128 1.0310 26 8 3.2123 -3.9841 1.9359 27 6 3.5942 -1.5740 -0.0124 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 1.7707 -3.0247 0.9989 32 1 0.9527 -2.8268 -0.6097 33 1 3.1161 -2.7972 -1.7989 34 1 4.0313 -5.5966 -1.6818 35 1 5.3123 -4.3493 -1.7372 36 1 6.9465 -4.1979 -0.0604 37 1 9.5727 -4.8017 -0.0479 38 1 9.0560 -4.3923 1.6055 39 1 13.8085 -7.6134 2.9305 40 1 5.2829 -5.7157 2.0566 41 1 4.0172 -6.6492 1.2007 42 1 4.2262 -0.9368 -0.6310 43 1 4.0043 -1.7351 0.9845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001685950705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:21 Heat of formation + Delta-G solvation = -51.915647 kcal Electronic energy + Delta-G solvation = -26701.291485 eV Core-core repulsion = 22681.738766 eV Total energy + Delta-G solvation = -4019.552719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.69446 -40.18366 -39.09151 -37.94070 -36.85703 -34.11391 -32.46610 -31.94217 -30.73104 -29.12055 -28.20604 -27.41605 -26.44418 -25.51784 -23.29153 -22.27537 -20.64905 -19.72353 -19.27953 -17.94814 -17.65495 -17.33446 -17.16939 -16.49782 -16.23778 -15.64494 -15.56671 -15.15354 -15.04121 -14.83383 -14.58420 -14.08500 -13.93880 -13.72845 -13.46218 -13.32479 -13.22811 -13.06077 -12.94562 -12.78799 -12.60177 -12.46046 -12.09943 -12.01233 -11.85940 -11.55615 -11.09373 -11.06100 -10.79574 -10.34188 -10.14677 -9.86498 -9.60288 -9.26833 -9.16615 -9.10047 -9.05981 -8.30197 -6.55212 -6.25633 -3.96702 2.04907 2.14741 2.20047 2.75968 2.85261 2.90780 3.20444 3.24527 3.28421 3.56688 3.71120 3.88021 3.97061 4.11261 4.16720 4.37081 4.43521 4.54002 4.75828 4.77557 4.86027 4.94179 4.96999 5.01494 5.09950 5.11005 5.14611 5.18142 5.24335 5.36218 5.43666 5.46844 5.61052 5.68105 5.80313 6.06034 6.07058 6.38338 6.56566 7.26541 7.47108 7.56304 7.72038 7.73371 8.31407 8.42055 9.20094 10.81732 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.002084 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.520311 B =13433.665806 C =14520.182847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.543 3.457 3 O -0.545 6.545 4 N -0.643 5.643 5 C 0.079 3.921 6 C 0.121 3.879 7 N -0.612 5.612 8 C 0.097 3.903 9 C 0.139 3.861 10 H 0.119 0.881 11 N -0.733 5.733 12 C 0.536 3.464 13 O -0.511 6.511 14 C -0.155 4.155 15 S -0.058 6.058 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.168 4.168 25 C 0.524 3.476 26 O -0.523 6.523 27 C 0.091 3.909 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.400 0.600 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.083 0.917 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.393 7.066 -11.083 28.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.334 3.666 3 O -0.422 6.422 4 N -0.380 5.380 5 C -0.045 4.045 6 C 0.017 3.983 7 N -0.347 5.347 8 C -0.026 4.026 9 C 0.032 3.968 10 H 0.137 0.863 11 N -0.388 5.388 12 C 0.323 3.677 13 O -0.384 6.384 14 C -0.306 4.306 15 S 0.168 5.832 16 C -0.685 4.685 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.209 4.209 25 C 0.313 3.687 26 O -0.399 6.399 27 C -0.033 4.033 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.099 0.901 33 H 0.148 0.852 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.235 0.765 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.102 0.898 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -25.693 6.062 -10.145 28.280 hybrid contribution 1.226 2.473 -0.232 2.770 sum -24.467 8.535 -10.377 27.913 Atomic orbital electron populations 1.21824 0.90857 1.05002 1.04778 1.20388 0.90136 0.81036 0.75072 1.90751 1.70800 1.30225 1.50422 1.49345 1.09380 1.05611 1.73686 1.23811 0.97337 0.79536 1.03809 1.22820 0.92728 0.83301 0.99482 1.48149 1.50553 1.25752 1.10233 1.22521 0.93585 0.93221 0.93303 1.21742 0.82882 0.98665 0.93509 0.86278 1.46055 1.10547 1.13703 1.68508 1.20358 0.84868 0.86877 0.75615 1.90719 1.83033 1.15576 1.49105 1.23544 0.96334 1.05517 1.05157 1.85382 1.04175 1.11512 1.82110 1.22858 0.97333 0.97986 1.50281 0.90899 1.24992 0.98565 0.95383 0.94624 1.70011 1.28117 1.11563 1.40538 0.86164 0.80875 0.79743 0.78706 1.20245 1.20736 1.19691 1.22877 0.99411 0.97063 1.01596 1.21057 0.80479 0.85727 0.81473 1.90674 1.44700 1.62072 1.42448 1.23436 0.84790 0.93265 1.01855 0.88759 0.90178 0.88619 0.86300 0.90090 0.85224 0.88978 0.89120 0.76534 0.89069 0.89129 0.92143 0.86992 0.86557 0.89839 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.19 36.01 0.37 -0.58 16 2 C 0.54 5.58 8.19 -10.98 -0.09 5.49 16 3 O -0.55 -8.10 17.88 5.55 0.10 -8.00 16 4 N -0.64 -5.69 3.69 -185.08 -0.68 -6.37 16 5 C 0.08 0.51 7.66 -8.37 -0.06 0.45 16 6 C 0.12 0.68 5.03 -67.68 -0.34 0.34 16 7 N -0.61 -3.76 3.18 -164.36 -0.52 -4.28 16 8 C 0.10 0.42 6.98 -3.03 -0.02 0.40 16 9 C 0.14 1.08 3.42 -66.20 -0.23 0.85 16 10 H 0.12 0.98 7.73 -51.93 -0.40 0.58 16 11 N -0.73 -7.57 5.17 -52.13 -0.27 -7.84 16 12 C 0.54 8.63 7.85 -10.99 -0.09 8.54 16 13 O -0.51 -10.15 15.60 5.55 0.09 -10.07 16 14 C -0.15 -2.87 6.16 36.00 0.22 -2.65 16 15 S -0.06 -1.51 20.57 -107.50 -2.21 -3.73 16 16 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 17 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.65 13.22 55.49 0.73 -24.92 16 20 Si 0.92 21.11 29.55 -169.99 -5.02 16.08 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 C -0.17 -1.47 6.58 -26.74 -0.18 -1.65 16 25 C 0.52 4.84 7.49 -10.86 -0.08 4.76 16 26 O -0.52 -6.61 14.48 5.56 0.08 -6.53 16 27 C 0.09 0.76 8.17 -8.50 -0.07 0.69 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.34 7.93 -51.93 -0.41 -0.07 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.12 1.06 5.37 -51.93 -0.28 0.78 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.13 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.09 0.29 8.05 -51.92 -0.42 -0.13 16 36 H 0.40 3.25 8.59 -40.82 -0.35 2.90 16 37 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 38 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.11 1.27 8.09 -51.93 -0.42 0.85 16 41 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.96 7.40 -51.93 -0.38 0.57 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -38.31 379.90 -8.37 -46.68 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.01 Total: -0.76 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.37 Total: 4.01 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.74 Total: -43.41 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: 0.27 Total: -24.60 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.31 -8.37 -46.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001685950705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.236 kcal (2) G-P(sol) polarization free energy of solvation -38.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds