Wall clock time and date at job start Tue Mar 31 2020 23:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 119.99803 * 2 1 4 4 N 1.34777 * 119.99675 * 180.27875 * 2 1 3 5 5 C 1.47062 * 136.06053 * 359.34957 * 4 2 1 6 6 C 1.53749 * 87.88863 * 152.96825 * 5 4 2 7 7 N 1.46505 * 114.09025 * 139.78132 * 6 5 4 8 8 C 1.46760 * 124.35271 * 146.28431 * 7 6 5 9 9 C 1.54656 * 105.38469 * 162.85280 * 8 7 6 10 10 H 1.09001 * 110.85144 * 143.78622 * 9 8 7 11 11 N 1.46494 * 111.19573 * 267.59797 * 9 8 7 12 12 C 1.34777 * 119.99899 * 198.86170 * 11 9 8 13 13 O 1.21284 * 119.99873 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00109 * 180.02562 * 12 11 9 15 15 S 1.81000 * 109.47115 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99987 * 179.97438 * 15 14 12 17 17 H 1.08005 * 119.99882 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00283 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99549 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00250 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47194 * 89.99388 * 20 18 16 22 22 H 1.48496 * 109.47398 * 209.99717 * 20 18 16 23 23 H 1.48502 * 109.47168 * 329.99796 * 20 18 16 24 24 C 1.54637 * 101.68188 * 25.77018 * 9 8 7 25 25 C 1.34419 * 124.34683 * 326.58950 * 7 6 5 26 26 O 1.21280 * 124.94189 * 0.42178 * 25 7 6 27 27 C 1.47070 * 136.05212 * 179.73146 * 4 2 1 28 28 H 1.09003 * 109.47157 * 89.99448 * 1 2 3 29 29 H 1.08998 * 109.47436 * 209.99505 * 1 2 3 30 30 H 1.09000 * 109.47527 * 330.00230 * 1 2 3 31 31 H 1.08998 * 113.46736 * 267.69995 * 5 4 2 32 32 H 1.08998 * 113.46422 * 38.13624 * 5 4 2 33 33 H 1.09000 * 114.39692 * 272.68057 * 6 5 4 34 34 H 1.08995 * 110.24729 * 281.98761 * 8 7 6 35 35 H 1.09008 * 110.24021 * 43.98354 * 8 7 6 36 36 H 0.97000 * 120.00504 * 18.86028 * 11 9 8 37 37 H 1.08998 * 109.47042 * 299.99657 * 14 12 11 38 38 H 1.09001 * 109.46907 * 59.99933 * 14 12 11 39 39 H 0.97001 * 119.99781 * 180.02562 * 19 18 16 40 40 H 1.08996 * 110.48839 * 216.30542 * 24 9 8 41 41 H 1.09003 * 110.60075 * 93.71637 * 24 9 8 42 42 H 1.08996 * 113.46675 * 321.85429 * 27 4 2 43 43 H 1.08994 * 113.47148 * 92.30193 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0057 5 6 1.8265 -2.5945 -0.0010 6 6 3.1615 -2.8699 -0.7123 7 7 3.8557 -4.0695 -0.2375 8 6 4.6714 -4.9451 -1.0872 9 6 5.5314 -5.7800 -0.1098 10 1 5.6647 -6.7961 -0.4813 11 7 6.8261 -5.1402 0.1357 12 6 7.8502 -5.8609 0.6341 13 8 7.6996 -7.0390 0.8797 14 6 9.1819 -5.2026 0.8873 15 16 10.3414 -6.4229 1.5525 16 6 11.7711 -5.4118 1.7480 17 1 11.7348 -4.3670 1.4767 18 6 12.9443 -5.9581 2.2495 19 7 12.9887 -7.2316 2.5796 20 14 14.4598 -4.8860 2.4574 21 1 14.4552 -4.2799 3.8131 22 1 15.6799 -5.7158 2.2903 23 1 14.4490 -3.8099 1.4341 24 6 4.6571 -5.7674 1.1656 25 6 3.8226 -4.5128 1.0310 26 8 3.2123 -3.9841 1.9359 27 6 3.5942 -1.5740 -0.0124 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 1.7707 -3.0247 0.9989 32 1 0.9527 -2.8268 -0.6097 33 1 3.1161 -2.7972 -1.7989 34 1 4.0313 -5.5966 -1.6818 35 1 5.3123 -4.3493 -1.7372 36 1 6.9465 -4.1979 -0.0604 37 1 9.5727 -4.8017 -0.0479 38 1 9.0560 -4.3923 1.6055 39 1 13.8085 -7.6134 2.9305 40 1 5.2829 -5.7157 2.0566 41 1 4.0172 -6.6492 1.2007 42 1 4.2262 -0.9368 -0.6310 43 1 4.0043 -1.7351 0.9845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001685950705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:20 Heat of formation + Delta-G solvation = -82.163869 kcal Electronic energy + Delta-G solvation = -26702.603147 eV Core-core repulsion = 22681.738766 eV Total energy + Delta-G solvation = -4020.864380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.34737 -41.01256 -40.18257 -38.73194 -37.69116 -35.05621 -34.57768 -32.79167 -31.49422 -30.29675 -28.77084 -28.14438 -27.60806 -27.03302 -23.89939 -23.07361 -21.73157 -20.44138 -19.93613 -19.82544 -18.30948 -18.10330 -17.88267 -17.76071 -17.03041 -16.87518 -16.53990 -16.32494 -16.23002 -16.07609 -15.57374 -15.27596 -14.72583 -14.59681 -14.51971 -14.41883 -14.07120 -13.78198 -13.71868 -13.58001 -13.34006 -13.22065 -13.15887 -13.05311 -12.91263 -12.88141 -12.59790 -12.48815 -12.09976 -11.72349 -11.14499 -11.14039 -10.95745 -10.94655 -10.26745 -10.17544 -9.80874 -9.79366 -8.64545 -8.34722 -6.11478 1.27276 1.39048 1.41762 1.45417 1.47289 1.50473 1.57198 1.61860 2.17789 2.23361 2.29061 2.99568 3.16242 3.27842 3.32922 3.40100 3.55377 3.76338 3.87403 3.98623 4.02352 4.24993 4.28890 4.32840 4.40734 4.49713 4.54058 4.54853 4.57826 4.61525 4.66862 4.68554 4.82333 4.87203 4.92194 5.01663 5.42423 5.45034 5.54563 5.96055 6.19975 6.45750 6.60346 6.98511 7.04635 7.07262 7.23345 8.74182 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.002084 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.520311 B =13433.665806 C =14520.182847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.531 3.469 3 O -0.603 6.603 4 N -0.646 5.646 5 C 0.081 3.919 6 C 0.140 3.860 7 N -0.601 5.601 8 C 0.107 3.893 9 C 0.134 3.866 10 H 0.121 0.879 11 N -0.708 5.708 12 C 0.541 3.459 13 O -0.554 6.554 14 C -0.134 4.134 15 S -0.146 6.146 16 C -0.547 4.547 17 H 0.081 0.919 18 C 0.014 3.986 19 N -0.909 5.909 20 Si 0.995 3.005 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.258 1.258 24 C -0.168 4.168 25 C 0.521 3.479 26 O -0.563 6.563 27 C 0.077 3.923 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.171 0.829 34 H 0.131 0.869 35 H 0.115 0.885 36 H 0.414 0.586 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.271 0.729 40 H 0.080 0.920 41 H 0.133 0.867 42 H 0.084 0.916 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.852 8.044 -13.782 31.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.324 3.676 3 O -0.485 6.485 4 N -0.381 5.381 5 C -0.042 4.042 6 C 0.037 3.963 7 N -0.334 5.334 8 C -0.015 4.015 9 C 0.029 3.971 10 H 0.139 0.861 11 N -0.363 5.363 12 C 0.327 3.673 13 O -0.432 6.432 14 C -0.285 4.285 15 S 0.081 5.919 16 C -0.695 4.695 17 H 0.099 0.901 18 C -0.191 4.191 19 N -0.546 5.546 20 Si 0.817 3.183 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.182 1.182 24 C -0.209 4.209 25 C 0.311 3.689 26 O -0.443 6.443 27 C -0.047 4.047 28 H 0.137 0.863 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.188 0.812 34 H 0.148 0.852 35 H 0.134 0.866 36 H 0.251 0.749 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.151 0.849 42 H 0.102 0.898 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.191 7.042 -12.898 30.907 hybrid contribution 1.565 2.186 0.603 2.755 sum -25.626 9.228 -12.295 29.883 Atomic orbital electron populations 1.21847 0.87300 1.05803 1.06579 1.21281 0.91900 0.80507 0.73879 1.90716 1.72247 1.32289 1.53250 1.49510 1.09711 1.06411 1.72442 1.23824 0.99366 0.77658 1.03345 1.22950 0.91212 0.81172 1.01011 1.48144 1.50043 1.25768 1.09429 1.22718 0.93508 0.93235 0.92007 1.21988 0.81494 0.99570 0.94081 0.86075 1.45792 1.10232 1.14044 1.66182 1.19906 0.85139 0.86331 0.75911 1.90710 1.83653 1.17375 1.51424 1.23402 0.95974 1.03347 1.05806 1.85497 1.06821 1.16131 1.83429 1.23204 0.97876 0.98322 1.50083 0.90095 1.26081 1.02143 0.96766 0.94100 1.70169 1.29107 1.13637 1.41668 0.84998 0.76333 0.77922 0.79020 1.19601 1.20237 1.18242 1.22834 0.99415 0.97884 1.00750 1.21096 0.80119 0.85626 0.82104 1.90669 1.46424 1.63148 1.44022 1.23498 0.85029 0.95355 1.00858 0.86292 0.88406 0.88742 0.88760 0.86544 0.81159 0.85166 0.86644 0.74850 0.86974 0.87936 0.92010 0.90156 0.84883 0.89787 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 10.19 71.24 0.73 -0.75 16 2 C 0.53 10.57 8.19 87.66 0.72 11.29 16 3 O -0.60 -18.37 17.88 -3.04 -0.05 -18.42 16 4 N -0.65 -10.56 3.69 -857.85 -3.16 -13.72 16 5 C 0.08 0.84 7.66 83.27 0.64 1.48 16 6 C 0.14 1.07 5.03 45.55 0.23 1.30 16 7 N -0.60 -5.38 3.18 -792.52 -2.52 -7.89 16 8 C 0.11 0.41 6.98 86.89 0.61 1.02 16 9 C 0.13 1.74 3.42 46.11 0.16 1.89 16 10 H 0.12 1.68 7.73 -2.39 -0.02 1.66 16 11 N -0.71 -13.18 5.17 -437.24 -2.26 -15.43 16 12 C 0.54 17.07 7.85 87.66 0.69 17.76 16 13 O -0.55 -22.33 15.60 -3.04 -0.05 -22.38 16 14 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 15 S -0.15 -7.79 20.57 -56.49 -1.16 -8.95 16 16 C -0.55 -30.66 9.50 67.95 0.65 -30.01 16 17 H 0.08 4.23 7.80 -2.91 -0.02 4.20 16 18 C 0.01 0.79 5.49 84.86 0.47 1.26 16 19 N -0.91 -55.07 13.22 21.65 0.29 -54.79 16 20 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 C -0.17 -2.76 6.58 30.59 0.20 -2.56 16 25 C 0.52 8.97 7.49 87.90 0.66 9.63 16 26 O -0.56 -14.39 14.48 -3.03 -0.04 -14.43 16 27 C 0.08 1.22 8.17 83.18 0.68 1.90 16 28 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.10 0.57 7.93 -2.39 -0.02 0.55 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.58 5.37 -2.39 -0.01 1.56 16 32 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.17 0.06 8.14 -2.39 -0.02 0.05 16 34 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 35 H 0.12 0.03 8.05 -2.38 -0.02 0.01 16 36 H 0.41 5.52 8.59 -92.71 -0.80 4.72 16 37 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 38 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 39 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.08 1.89 8.09 -2.39 -0.02 1.87 16 41 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.36 7.40 -2.39 -0.02 1.34 16 Total: -1.00 -90.64 379.90 0.17 -90.47 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.25 Total: 10.53 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 6.85 Total: 9.73 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -7.65 Total: -91.83 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -0.15 Total: -55.24 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -7.79 SS G_CDS: -1.16 Total: -8.95 kcal Total: -90.64 0.17 -90.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001685950705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.306 kcal (2) G-P(sol) polarization free energy of solvation -90.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds