Wall clock time and date at job start Tue Mar 31 2020 23:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.47063 * 136.06196 * 359.63468 * 4 2 1 6 6 C 1.53747 * 87.89242 * 152.96007 * 5 4 2 7 7 N 1.46503 * 114.26902 * 139.79149 * 6 5 4 8 8 C 1.46765 * 124.34794 * 146.47573 * 7 6 5 9 9 C 1.54479 * 105.47099 * 197.01552 * 8 7 6 10 10 H 1.08998 * 110.97403 * 216.42938 * 9 8 7 11 11 N 1.46505 * 110.96880 * 92.70188 * 9 8 7 12 12 C 1.34774 * 120.00184 * 154.99896 * 11 9 8 13 13 O 1.21293 * 119.99753 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00498 * 180.02562 * 12 11 9 15 15 S 1.80994 * 109.47352 * 180.02562 * 14 12 11 16 16 C 1.76206 * 99.99897 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00148 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99708 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00324 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99706 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47187 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46970 * 120.00163 * 20 18 16 23 23 H 1.48490 * 109.47271 * 240.00207 * 20 18 16 24 24 C 1.54633 * 101.76664 * 334.58733 * 9 8 7 25 25 C 1.34419 * 124.34821 * 326.17895 * 7 6 5 26 26 O 1.21282 * 124.94045 * 359.56720 * 25 7 6 27 27 C 1.47066 * 136.05495 * 179.97438 * 4 2 1 28 28 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 30 30 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 31 31 H 1.09000 * 113.46723 * 267.69839 * 5 4 2 32 32 H 1.09004 * 113.46617 * 38.12776 * 5 4 2 33 33 H 1.09007 * 114.39667 * 272.67638 * 6 5 4 34 34 H 1.08998 * 110.24593 * 316.01427 * 8 7 6 35 35 H 1.09002 * 110.24518 * 77.92954 * 8 7 6 36 36 H 0.97000 * 120.00310 * 335.00573 * 11 9 8 37 37 H 1.09004 * 109.46879 * 300.00153 * 14 12 11 38 38 H 1.09005 * 109.46954 * 59.99462 * 14 12 11 39 39 H 0.96996 * 120.00362 * 179.97438 * 19 18 16 40 40 H 1.08999 * 110.48858 * 143.47382 * 24 9 8 41 41 H 1.08998 * 110.48253 * 266.11756 * 24 9 8 42 42 H 1.09001 * 113.47292 * 321.87108 * 27 4 2 43 43 H 1.09003 * 113.46573 * 92.31221 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8266 -2.5945 0.0077 6 6 3.1645 -2.8719 -0.6972 7 7 3.8600 -4.0695 -0.2193 8 6 4.6828 -4.9421 -1.0652 9 6 4.8360 -6.2591 -0.2724 10 1 5.8280 -6.6875 -0.4154 11 7 3.7944 -7.2196 -0.6452 12 6 4.0081 -8.5409 -0.4868 13 8 5.0631 -8.9347 -0.0359 14 6 2.9371 -9.5289 -0.8708 15 16 3.5208 -11.2101 -0.5410 16 6 2.1131 -12.1311 -1.0653 17 1 1.2435 -11.6174 -1.4477 18 6 2.1219 -13.5169 -0.9869 19 7 3.1819 -14.1431 -0.5213 20 14 0.6292 -14.4933 -1.5420 21 1 -0.4222 -13.5604 -2.0213 22 1 1.0186 -15.4084 -2.6449 23 1 0.1049 -15.2871 -0.4019 24 6 4.6462 -5.7746 1.1837 25 6 3.8310 -4.5071 1.0513 26 8 3.2359 -3.9658 1.9589 27 6 3.5941 -1.5740 0.0002 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 -0.5139 -0.8900 31 1 1.7665 -3.0218 1.0086 32 1 0.9552 -2.8285 -0.6040 33 1 3.1236 -2.8024 -1.7843 34 1 4.1810 -5.1295 -2.0145 35 1 5.6588 -4.4887 -1.2380 36 1 2.9510 -6.9047 -1.0062 37 1 2.0378 -9.3356 -0.2857 38 1 2.7097 -9.4243 -1.9317 39 1 3.1879 -15.1115 -0.4661 40 1 4.1053 -6.5202 1.7664 41 1 5.6109 -5.5571 1.6421 42 1 4.2287 -0.9387 -0.6177 43 1 4.0005 -1.7321 0.9993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001685950706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:24 Heat of formation + Delta-G solvation = -53.073233 kcal Electronic energy + Delta-G solvation = -26615.067177 eV Core-core repulsion = 22595.464261 eV Total energy + Delta-G solvation = -4019.602916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.69996 -40.19840 -39.11150 -37.96084 -36.86948 -34.12934 -32.48844 -31.94994 -30.73605 -29.14558 -28.21177 -27.42200 -26.45999 -25.54191 -23.29917 -22.26619 -20.68814 -19.74226 -19.29657 -17.98211 -17.66750 -17.37506 -17.07808 -16.55359 -16.32167 -15.60693 -15.49386 -15.19335 -15.06253 -14.85796 -14.62595 -14.08895 -14.00146 -13.65177 -13.40883 -13.30968 -13.27793 -13.16301 -12.98587 -12.75529 -12.60758 -12.47099 -12.13649 -12.01547 -11.87068 -11.57478 -11.11779 -11.08490 -10.81310 -10.35435 -10.16114 -9.87591 -9.62186 -9.30622 -9.17411 -9.12923 -9.07153 -8.31690 -6.57389 -6.27881 -3.98996 2.04772 2.12687 2.18612 2.74672 2.83509 2.88583 3.17474 3.22560 3.27160 3.54588 3.70397 3.89375 3.97589 4.10550 4.14311 4.36292 4.41086 4.54606 4.76470 4.78179 4.87426 4.95511 4.96674 5.00401 5.07773 5.08448 5.11628 5.17349 5.23222 5.36162 5.42089 5.48170 5.58098 5.66986 5.77658 6.03548 6.05737 6.36266 6.55796 7.24746 7.45346 7.54273 7.70479 7.71807 8.29300 8.40134 9.17899 10.79539 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.001980 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.325447 B =14135.110710 C =15048.485691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.544 3.456 3 O -0.546 6.546 4 N -0.644 5.644 5 C 0.080 3.920 6 C 0.121 3.879 7 N -0.612 5.612 8 C 0.096 3.904 9 C 0.137 3.863 10 H 0.123 0.877 11 N -0.732 5.732 12 C 0.536 3.464 13 O -0.511 6.511 14 C -0.155 4.155 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.169 4.169 25 C 0.523 3.477 26 O -0.523 6.523 27 C 0.092 3.908 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.400 0.600 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.268 0.732 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 23.979 -3.070 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.335 3.665 3 O -0.424 6.424 4 N -0.380 5.380 5 C -0.044 4.044 6 C 0.017 3.983 7 N -0.346 5.346 8 C -0.027 4.027 9 C 0.031 3.969 10 H 0.141 0.859 11 N -0.387 5.387 12 C 0.323 3.677 13 O -0.384 6.384 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.205 1.205 24 C -0.210 4.210 25 C 0.312 3.688 26 O -0.399 6.399 27 C -0.032 4.032 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.136 0.864 32 H 0.101 0.899 33 H 0.148 0.852 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.234 0.766 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.100 0.900 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.183 24.266 -1.819 24.335 hybrid contribution -2.591 -0.097 -1.047 2.796 sum -2.408 24.170 -2.867 24.458 Atomic orbital electron populations 1.21861 0.90777 1.05509 1.04458 1.20389 0.90170 0.80982 0.75000 1.90739 1.70893 1.30234 1.50490 1.49312 1.09346 1.05667 1.73719 1.23784 0.97424 0.79385 1.03815 1.22821 0.92710 0.83304 0.99500 1.48152 1.49938 1.26246 1.10302 1.22517 0.96388 0.89228 0.94612 1.21740 0.94958 0.88065 0.92162 0.85937 1.46044 1.18780 1.05793 1.68119 1.20373 0.88600 0.81900 0.76873 1.90724 1.26586 1.78411 1.42715 1.23539 1.00235 1.02177 1.04557 1.85410 1.23604 0.89929 1.84288 1.22894 1.02214 0.93788 1.49523 0.90847 1.24998 0.97033 0.96758 0.94807 1.70015 1.28054 1.09243 1.42882 0.86112 0.81375 0.79552 0.78430 1.19622 1.20552 1.20539 1.22888 1.02596 0.96204 0.99316 1.21049 0.80233 0.85939 0.81566 1.90683 1.44718 1.62144 1.42393 1.23415 0.84795 0.93273 1.01759 0.88729 0.89272 0.89336 0.86400 0.89932 0.85230 0.89076 0.89065 0.76566 0.89125 0.89081 0.92175 0.86963 0.86602 0.89958 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.15 36.01 0.37 -0.61 16 2 C 0.54 5.49 8.19 -10.98 -0.09 5.40 16 3 O -0.55 -7.88 17.86 5.56 0.10 -7.78 16 4 N -0.64 -5.55 3.69 -185.11 -0.68 -6.24 16 5 C 0.08 0.53 7.83 -8.39 -0.07 0.47 16 6 C 0.12 0.67 5.02 -67.69 -0.34 0.33 16 7 N -0.61 -3.72 3.18 -164.48 -0.52 -4.24 16 8 C 0.10 0.43 6.97 -3.12 -0.02 0.40 16 9 C 0.14 1.05 3.53 -66.29 -0.23 0.82 16 10 H 0.12 1.04 7.54 -51.93 -0.39 0.64 16 11 N -0.73 -7.24 5.12 -52.22 -0.27 -7.51 16 12 C 0.54 8.40 7.85 -10.99 -0.09 8.31 16 13 O -0.51 -10.03 15.50 5.55 0.09 -9.94 16 14 C -0.15 -2.78 6.16 36.00 0.22 -2.56 16 15 S -0.06 -1.50 20.57 -107.50 -2.21 -3.72 16 16 C -0.54 -14.64 9.50 30.94 0.29 -14.35 16 17 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 18 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 19 N -0.87 -25.37 13.22 55.49 0.73 -24.63 16 20 Si 0.92 20.75 29.55 -169.99 -5.02 15.73 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.17 -1.42 6.58 -26.74 -0.18 -1.60 16 25 C 0.52 4.72 7.50 -10.86 -0.08 4.64 16 26 O -0.52 -6.49 14.47 5.56 0.08 -6.41 16 27 C 0.09 0.72 8.17 -8.53 -0.07 0.65 16 28 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.12 1.08 5.44 -51.93 -0.28 0.80 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.09 0.29 8.08 -51.93 -0.42 -0.13 16 35 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.40 3.01 8.66 -40.82 -0.35 2.65 16 37 H 0.09 1.52 8.14 -51.91 -0.42 1.10 16 38 H 0.09 1.49 8.14 -51.91 -0.42 1.07 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.11 1.18 8.09 -51.93 -0.42 0.76 16 41 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.09 0.86 7.35 -51.93 -0.38 0.48 16 LS Contribution 380.10 15.07 5.73 5.73 Total: -1.00 -37.75 380.10 -8.38 -46.13 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.02 Total: -0.95 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -0.38 Total: 3.83 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.74 Total: -42.62 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: 0.27 Total: -24.13 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.75 -8.38 -46.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001685950706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.944 kcal (2) G-P(sol) polarization free energy of solvation -37.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds