Wall clock time and date at job start Tue Mar 31 2020 23:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46902 * 2 1 4 4 C 1.46502 * 120.00021 * 270.25834 * 3 2 1 5 5 C 1.52994 * 109.47403 * 266.98988 * 4 3 2 6 6 N 1.46498 * 109.47398 * 180.02562 * 5 4 3 7 7 C 1.34778 * 120.00451 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99829 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00088 * 179.97438 * 7 6 5 10 10 S 1.81001 * 109.46932 * 179.97438 * 9 7 6 11 11 C 1.76201 * 99.99746 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00228 * 0.02562 * 11 10 9 13 13 C 1.38804 * 119.99873 * 180.02562 * 11 10 9 14 14 N 1.31629 * 119.99845 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99912 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47381 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47373 * 119.99898 * 15 13 11 18 18 H 1.48499 * 109.47211 * 239.99889 * 15 13 11 19 19 C 1.34778 * 119.99865 * 89.99123 * 3 2 1 20 20 O 1.21608 * 120.00239 * 354.76939 * 19 3 2 21 21 C 1.47426 * 119.99879 * 174.77307 * 19 3 2 22 22 C 1.36092 * 126.44671 * 174.25277 * 21 19 3 23 23 O 1.34255 * 106.94692 * 179.90147 * 22 21 19 24 24 C 1.34053 * 108.22889 * 0.36840 * 23 22 21 25 25 C 1.50700 * 125.37885 * 179.80515 * 24 23 22 26 26 N 1.29939 * 109.23865 * 359.76975 * 24 23 22 27 27 H 1.08999 * 109.46678 * 59.99756 * 1 2 3 28 28 H 1.09006 * 109.47091 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47304 * 299.99763 * 1 2 3 30 30 H 1.09003 * 109.46989 * 239.99671 * 2 1 3 31 31 H 1.08999 * 109.46678 * 120.00244 * 2 1 3 32 32 H 1.08995 * 109.46741 * 26.99068 * 4 3 2 33 33 H 1.09004 * 109.46830 * 146.98957 * 4 3 2 34 34 H 1.09004 * 109.46984 * 299.99737 * 5 4 3 35 35 H 1.08999 * 109.47169 * 59.99711 * 5 4 3 36 36 H 0.97010 * 119.99696 * 359.97438 * 6 5 4 37 37 H 1.08995 * 109.47030 * 300.00129 * 9 7 6 38 38 H 1.09004 * 109.46907 * 60.00243 * 9 7 6 39 39 H 0.97002 * 119.99970 * 180.02562 * 14 13 11 40 40 H 1.07997 * 126.52512 * 0.04210 * 22 21 19 41 41 H 1.08998 * 109.46527 * 269.95949 * 25 24 23 42 42 H 1.08994 * 109.47278 * 29.95466 * 25 24 23 43 43 H 1.08996 * 109.46912 * 149.95821 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2571 2.0737 -1.2687 5 6 3.7203 1.8965 -1.6791 6 7 3.9592 2.5896 -2.9475 7 6 5.1856 2.5694 -3.5059 8 8 6.0917 1.9778 -2.9582 9 6 5.4311 3.2818 -4.8110 10 16 7.1622 3.0723 -5.2963 11 6 7.1681 3.9786 -6.8073 12 1 6.2623 4.4515 -7.1570 13 6 8.3370 4.0849 -7.5483 14 7 9.4409 3.5081 -7.1225 15 14 8.3434 5.0464 -9.1498 16 1 6.9864 5.5930 -9.4046 17 1 9.3173 6.1633 -9.0528 18 1 8.7316 4.1468 -10.2657 19 6 2.2428 2.0166 1.1672 20 8 1.9507 1.4790 2.2182 21 6 2.8423 3.3634 1.1699 22 6 3.0247 4.1650 2.2545 23 8 3.6012 5.2946 1.8137 24 6 3.7621 5.1931 0.4867 25 6 4.3699 6.2477 -0.4017 26 7 3.3117 4.0414 0.0877 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6103 1.6539 -2.0391 33 1 2.0390 3.1351 -1.1499 34 1 4.3671 2.3164 -0.9087 35 1 3.9384 0.8352 -1.7978 36 1 3.2344 3.0624 -3.3858 37 1 4.7841 2.8623 -5.5813 38 1 5.2134 4.3432 -4.6920 39 1 10.2579 3.5827 -7.6401 40 1 2.7586 3.9353 3.2756 41 1 3.5869 6.9156 -0.7607 42 1 5.1045 6.8203 0.1644 43 1 4.8579 5.7700 -1.2512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688387538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:04 Heat of formation + Delta-G solvation = -39.565101 kcal Electronic energy + Delta-G solvation = -27163.508206 eV Core-core repulsion = 23144.491046 eV Total energy + Delta-G solvation = -4019.017159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.75180 -40.18717 -39.00749 -36.63113 -35.24405 -34.33167 -32.60773 -32.43164 -31.50217 -29.89531 -28.19781 -27.68086 -25.48801 -25.17954 -23.38705 -22.67466 -21.71224 -20.44124 -19.69064 -18.06277 -17.66373 -17.23417 -16.99906 -16.66594 -16.17150 -15.87189 -15.28583 -15.00097 -14.80952 -14.78365 -14.26215 -14.11790 -13.98052 -13.80888 -13.63683 -13.41168 -13.14850 -12.98007 -12.76186 -12.56154 -12.30976 -12.21570 -12.13744 -11.72693 -11.34840 -11.15945 -11.07404 -11.01962 -10.84305 -10.76206 -10.37772 -9.81001 -9.42219 -9.33217 -9.08054 -8.99451 -8.76255 -8.21962 -6.49743 -6.22113 -3.92328 0.78969 1.68607 2.26654 2.50543 2.95411 3.10282 3.16842 3.20882 3.28391 3.33311 3.52423 3.83581 4.20109 4.27438 4.46641 4.71473 4.77975 4.81460 5.01154 5.02360 5.10311 5.12048 5.13139 5.18415 5.22913 5.28030 5.35434 5.41623 5.47000 5.59505 5.65721 5.77945 5.79397 5.87961 5.92204 6.14524 6.15091 6.25265 6.67620 6.93700 7.21405 7.59451 7.75964 7.78862 8.35032 8.68838 9.23366 10.85308 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.002511 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.213849 B =11147.788668 C =12344.796406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.110 3.890 3 N -0.594 5.594 4 C 0.101 3.899 5 C 0.119 3.881 6 N -0.729 5.729 7 C 0.532 3.468 8 O -0.519 6.519 9 C -0.152 4.152 10 S -0.061 6.061 11 C -0.534 4.534 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.605 3.395 20 O -0.535 6.535 21 C -0.076 4.076 22 C 0.013 3.987 23 O -0.197 6.197 24 C 0.204 3.796 25 C -0.063 4.063 26 N -0.454 5.454 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.397 0.603 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.229 0.771 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.430 2.059 15.989 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.012 4.012 3 N -0.325 5.325 4 C -0.023 4.023 5 C -0.007 4.007 6 N -0.384 5.384 7 C 0.318 3.682 8 O -0.393 6.393 9 C -0.302 4.302 10 S 0.165 5.835 11 C -0.682 4.682 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C 0.393 3.607 20 O -0.412 6.412 21 C -0.195 4.195 22 C -0.062 4.062 23 O -0.083 6.083 24 C -0.004 4.004 25 C -0.121 4.121 26 N -0.185 5.185 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.230 0.770 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.245 0.755 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.868 0.527 16.812 24.539 hybrid contribution -1.357 1.645 -1.215 2.454 sum -19.225 2.172 15.597 24.851 Atomic orbital electron populations 1.22124 0.95541 1.02413 1.02397 1.21549 0.94642 0.81286 1.03727 1.47629 1.64794 1.14362 1.05757 1.21953 0.96019 0.99692 0.84589 1.21490 0.95902 0.96754 0.86538 1.45732 1.12058 1.56571 1.24023 1.20253 0.81697 0.80216 0.86055 1.90707 1.42726 1.42683 1.63228 1.23516 1.07749 1.02579 0.96397 1.85436 1.00066 1.70513 1.27470 1.22907 0.99051 1.38220 1.08061 0.90901 1.24996 0.94632 0.95681 0.98328 1.70030 1.00316 1.41596 1.38343 0.86126 0.78240 0.79337 0.81831 1.19617 1.20592 1.20603 1.16827 0.77323 0.82874 0.83675 1.90815 1.52703 1.66669 1.31046 1.21695 1.09215 0.98377 0.90232 1.25214 0.96715 0.83398 1.00838 1.84410 1.60505 1.37868 1.25490 1.26556 0.98814 0.95734 0.79319 1.20403 1.01053 0.93779 0.96837 1.71070 1.14334 1.04087 1.28988 0.92479 0.91362 0.92150 0.89909 0.89619 0.90295 0.87518 0.90733 0.92537 0.77011 0.89331 0.89280 0.92256 0.75525 0.88578 0.88988 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 37.16 0.38 -0.83 16 2 C 0.11 0.94 6.07 -4.04 -0.02 0.92 16 3 N -0.59 -6.05 2.48 -174.96 -0.43 -6.49 16 4 C 0.10 0.94 5.06 -4.04 -0.02 0.92 16 5 C 0.12 1.47 5.42 -4.05 -0.02 1.45 16 6 N -0.73 -9.41 5.56 -60.30 -0.33 -9.75 16 7 C 0.53 9.70 7.85 -10.99 -0.09 9.62 16 8 O -0.52 -11.86 15.86 5.56 0.09 -11.77 16 9 C -0.15 -2.95 6.16 36.00 0.22 -2.73 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.53 -14.94 9.50 30.94 0.29 -14.65 16 12 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 13 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 14 N -0.87 -25.93 13.22 55.49 0.73 -25.19 16 15 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.61 7.25 7.64 -12.52 -0.10 7.15 16 20 O -0.54 -7.44 16.53 5.27 0.09 -7.36 16 21 C -0.08 -0.84 6.48 -83.02 -0.54 -1.38 16 22 C 0.01 0.11 11.95 29.96 0.36 0.47 16 23 O -0.20 -1.84 10.73 6.51 0.07 -1.77 16 24 C 0.20 1.96 8.30 -13.08 -0.11 1.85 16 25 C -0.06 -0.43 10.51 36.01 0.38 -0.05 16 26 N -0.45 -4.95 6.24 -7.65 -0.05 -4.99 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.60 8.07 -51.93 -0.42 0.19 16 31 H 0.09 0.81 7.50 -51.93 -0.39 0.42 16 32 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 33 H 0.11 1.01 5.69 -51.93 -0.30 0.71 16 34 H 0.07 1.11 6.55 -51.93 -0.34 0.77 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 3.83 8.47 -40.82 -0.35 3.48 16 37 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 38 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.23 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -36.98 384.52 -6.62 -43.59 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.98 Total: 1.03 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 0.64 Total: 4.69 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.08 Total: -46.42 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: 0.25 Total: -20.90 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.98 -6.62 -43.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688387538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.028 kcal (2) G-P(sol) polarization free energy of solvation -36.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds