Wall clock time and date at job start Tue Mar 31 2020 23:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46500 * 109.47189 * 2 1 4 4 C 1.46498 * 119.99919 * 89.99650 * 3 2 1 5 5 C 1.53001 * 109.47425 * 269.99722 * 4 3 2 6 6 N 1.46493 * 109.47084 * 179.97438 * 5 4 3 7 7 C 1.34784 * 119.99864 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 6 5 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 6 5 10 10 C 1.50698 * 109.47166 * 179.97438 * 9 7 6 11 11 C 1.41382 * 126.80382 * 124.70753 * 10 9 7 12 12 C 1.35450 * 103.98724 * 179.89091 * 11 10 9 13 13 O 1.34037 * 106.44669 * 0.37273 * 12 11 10 14 14 N 1.20921 * 111.56701 * 359.74481 * 13 12 11 15 15 C 1.34773 * 119.99764 * 269.99974 * 3 2 1 16 16 O 1.21282 * 120.00017 * 180.02562 * 15 3 2 17 17 C 1.50702 * 120.00367 * 359.97438 * 15 3 2 18 18 S 1.80996 * 109.47342 * 180.02562 * 17 15 3 19 19 C 1.76204 * 100.00090 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99855 * 359.97438 * 19 18 17 21 21 C 1.38795 * 120.00008 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99887 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99775 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47222 * 90.00002 * 23 21 19 25 25 H 1.48507 * 109.46967 * 209.99940 * 23 21 19 26 26 H 1.48501 * 109.47292 * 329.99513 * 23 21 19 27 27 H 1.08992 * 109.47040 * 300.00401 * 1 2 3 28 28 H 1.08997 * 109.46441 * 60.00284 * 1 2 3 29 29 H 1.08996 * 109.47126 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47040 * 239.99599 * 2 1 3 31 31 H 1.08998 * 109.46825 * 120.00086 * 2 1 3 32 32 H 1.09007 * 109.47027 * 150.00242 * 4 3 2 33 33 H 1.08993 * 109.47264 * 30.00300 * 4 3 2 34 34 H 1.09007 * 109.46593 * 60.00255 * 5 4 3 35 35 H 1.09006 * 109.47216 * 300.00713 * 5 4 3 36 36 H 0.97000 * 120.00740 * 359.72857 * 6 5 4 37 37 H 1.08998 * 109.47224 * 299.99701 * 9 7 6 38 38 H 1.09002 * 109.47054 * 60.00213 * 9 7 6 39 39 H 1.08005 * 128.00407 * 0.02562 * 11 10 9 40 40 H 1.08001 * 126.77440 * 180.09926 * 12 11 10 41 41 H 1.09003 * 109.46871 * 300.00237 * 17 15 3 42 42 H 1.09001 * 109.46735 * 60.00303 * 17 15 3 43 43 H 0.97006 * 119.99777 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 0.9876 2.7932 1.7103 6 7 1.2316 3.4832 2.9793 7 6 0.2432 4.1896 3.5632 8 8 -0.8467 4.2579 3.0355 9 6 0.4924 4.8943 4.8717 10 6 -0.7630 5.6059 5.3060 11 6 -1.4374 5.4569 6.5397 12 6 -2.4906 6.3030 6.4413 13 8 -2.4074 6.8734 5.2313 14 7 -1.4447 6.4752 4.6174 15 6 2.2431 2.0165 -1.1672 16 8 2.6478 3.1598 -1.1672 17 6 1.9924 1.3059 -2.4723 18 16 2.3851 2.4146 -3.8481 19 6 2.0116 1.3586 -5.2083 20 1 1.6565 0.3542 -5.0305 21 6 2.1737 1.8175 -6.5081 22 7 2.6059 3.0418 -6.7246 23 14 1.7770 0.6982 -7.9500 24 1 0.3520 0.8688 -8.3317 25 1 2.6439 1.0504 -9.1032 26 1 2.0197 -0.7144 -7.5616 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.0645 2.7985 1.1384 33 1 2.5506 1.3452 2.0283 34 1 0.1856 2.0664 1.8407 35 1 0.6995 3.5198 0.9506 36 1 2.1031 3.4283 3.4016 37 1 0.7771 4.1642 5.6292 38 1 1.2959 5.6200 4.7462 39 1 -1.1726 4.8182 7.3694 40 1 -3.2502 6.4794 7.1886 41 1 2.6230 0.4186 -2.5298 42 1 0.9446 1.0114 -2.5302 43 1 2.7196 3.3624 -7.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688391549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:28 Heat of formation + Delta-G solvation = -7.274013 kcal Electronic energy + Delta-G solvation = -26207.829909 eV Core-core repulsion = 22190.212996 eV Total energy + Delta-G solvation = -4017.616913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.20341 -40.09066 -39.48003 -36.25714 -35.09856 -34.74012 -32.42622 -32.06336 -31.52010 -30.15128 -29.60127 -27.63973 -25.48335 -23.51644 -23.36818 -23.27124 -21.93359 -20.65344 -19.16582 -18.11726 -17.95321 -17.72521 -17.17171 -16.83223 -16.39070 -15.83182 -15.73273 -15.33927 -14.82801 -14.79798 -14.29811 -13.96739 -13.88649 -13.78505 -13.58024 -13.34898 -13.29025 -13.04505 -12.72406 -12.54471 -12.33074 -11.86446 -11.86094 -11.55723 -11.49200 -11.07447 -11.02948 -11.00342 -10.75357 -10.55396 -10.09356 -9.90550 -9.80791 -9.42840 -9.28334 -9.06243 -8.71269 -8.22680 -6.50025 -6.21199 -3.91997 1.26162 1.87321 2.39502 2.61982 2.99076 2.99741 3.13447 3.22808 3.28144 3.31509 3.60559 3.75567 4.17782 4.20396 4.50303 4.62475 4.72584 4.79251 4.81872 4.86510 4.91041 5.02989 5.11874 5.13770 5.19126 5.20997 5.33475 5.34168 5.52456 5.59917 5.64737 5.75107 5.78930 5.89507 5.91693 6.06235 6.11447 6.23361 6.58724 7.19221 7.44074 7.59884 7.97750 8.03829 8.35444 8.49076 9.24023 10.86208 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018906 B = 0.001904 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.623032 B =14699.291641 C =15299.899986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 N -0.618 5.618 4 C 0.110 3.890 5 C 0.102 3.898 6 N -0.727 5.727 7 C 0.513 3.487 8 O -0.521 6.521 9 C -0.061 4.061 10 C 0.019 3.981 11 C -0.230 4.230 12 C -0.064 4.064 13 O 0.107 5.893 14 N -0.333 5.333 15 C 0.534 3.466 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.401 0.599 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.171 0.829 40 H 0.216 0.784 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.286 -2.761 30.955 31.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.016 4.016 3 N -0.354 5.354 4 C -0.015 4.015 5 C -0.023 4.023 6 N -0.380 5.380 7 C 0.297 3.703 8 O -0.396 6.396 9 C -0.101 4.101 10 C -0.140 4.140 11 C -0.251 4.251 12 C -0.145 4.145 13 O 0.036 5.964 14 N -0.033 5.033 15 C 0.323 3.677 16 O -0.385 6.385 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.234 0.766 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.189 0.811 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.268 -0.351 29.161 29.474 hybrid contribution -0.331 -2.671 0.156 2.696 sum -4.599 -3.022 29.317 29.829 Atomic orbital electron populations 1.22323 0.95897 1.02342 1.02961 1.21593 0.94562 0.82092 1.03364 1.47896 1.68136 1.14331 1.05075 1.21441 0.96960 0.97195 0.85864 1.21891 0.98478 0.96751 0.85171 1.45786 1.14894 1.52864 1.24486 1.20297 0.84613 0.79087 0.86274 1.90789 1.24059 1.60274 1.64460 1.19971 0.94285 0.99668 0.96214 1.22865 0.99584 0.99083 0.92497 1.22672 0.97574 1.04948 0.99938 1.26021 1.01550 0.97201 0.89721 1.84902 1.36075 1.52125 1.23265 1.73945 0.97499 1.13459 1.18433 1.20412 0.76227 0.86493 0.84615 1.90709 1.43637 1.17388 1.86736 1.23583 1.04881 1.04527 0.97084 1.85419 1.86742 1.17983 0.93361 1.22848 1.51833 1.01450 0.92181 0.90929 1.24993 0.94660 0.95558 0.98386 1.70020 1.42901 1.15638 1.21665 0.86169 0.78437 0.80178 0.80720 1.20260 1.20749 1.19699 0.92345 0.91751 0.91483 0.89660 0.90546 0.89167 0.90279 0.91150 0.90620 0.76550 0.86556 0.86772 0.81102 0.76763 0.89202 0.89106 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 10.24 37.16 0.38 -1.41 16 2 C 0.11 1.08 5.98 -4.04 -0.02 1.06 16 3 N -0.62 -8.23 2.47 -173.69 -0.43 -8.66 16 4 C 0.11 1.17 5.56 -4.04 -0.02 1.14 16 5 C 0.10 1.20 6.00 -4.04 -0.02 1.18 16 6 N -0.73 -6.64 5.56 -60.29 -0.33 -6.98 16 7 C 0.51 5.84 7.82 -10.98 -0.09 5.75 16 8 O -0.52 -8.74 15.59 5.56 0.09 -8.65 16 9 C -0.06 -0.44 6.30 -29.04 -0.18 -0.63 16 10 C 0.02 0.19 6.10 -82.10 -0.50 -0.31 16 11 C -0.23 -1.55 11.12 -39.38 -0.44 -1.99 16 12 C -0.06 -0.40 12.30 29.74 0.37 -0.04 16 13 O 0.11 1.13 11.20 17.19 0.19 1.32 16 14 N -0.33 -4.35 11.46 33.42 0.38 -3.97 16 15 C 0.53 9.98 7.69 -10.99 -0.08 9.90 16 16 O -0.51 -11.53 15.44 5.56 0.09 -11.44 16 17 C -0.15 -3.04 4.71 36.01 0.17 -2.87 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.28 9.50 30.94 0.29 -14.99 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 23 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 27 H 0.06 0.59 6.26 -51.93 -0.33 0.26 16 28 H 0.06 0.79 7.22 -51.93 -0.38 0.42 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.89 6.44 -51.93 -0.33 0.55 16 31 H 0.08 0.56 7.89 -51.93 -0.41 0.15 16 32 H 0.09 1.08 7.42 -51.93 -0.39 0.69 16 33 H 0.08 0.56 7.89 -51.93 -0.41 0.15 16 34 H 0.07 0.84 6.26 -51.93 -0.33 0.52 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.40 2.11 8.47 -40.82 -0.35 1.77 16 37 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.17 0.58 8.06 -52.48 -0.42 0.15 16 40 H 0.22 0.32 8.06 -52.49 -0.42 -0.10 16 41 H 0.09 1.66 7.40 -51.91 -0.38 1.28 16 42 H 0.09 1.73 7.19 -51.92 -0.37 1.35 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -40.80 382.45 -6.75 -47.55 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.75 Total: -0.75 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -0.25 Total: -1.19 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.35 Total: -45.20 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.36 Total: -18.77 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -40.80 -6.75 -47.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688391549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.277 kcal (2) G-P(sol) polarization free energy of solvation -40.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds