Wall clock time and date at job start Tue Mar 31 2020 23:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46765 * 124.35423 * 2 1 4 4 C 1.54475 * 105.47103 * 162.98339 * 3 2 1 5 5 C 1.54627 * 101.76960 * 25.41744 * 4 3 2 6 6 H 1.08993 * 110.48692 * 216.38957 * 5 4 3 7 7 C 1.50696 * 110.48648 * 93.87936 * 5 4 3 8 8 O 1.21276 * 120.00222 * 359.97438 * 7 5 4 9 9 N 1.34775 * 119.99650 * 180.02562 * 7 5 4 10 10 C 1.46510 * 119.99672 * 179.97438 * 9 7 5 11 11 C 1.53946 * 113.84020 * 106.35056 * 10 9 7 12 12 N 1.47580 * 86.11645 * 90.74870 * 11 10 9 13 13 C 1.34777 * 134.49108 * 204.63952 * 12 11 10 14 14 O 1.21291 * 119.99838 * 180.02562 * 13 12 11 15 15 C 1.50692 * 120.00261 * 0.02562 * 13 12 11 16 16 S 1.81004 * 109.47353 * 179.97438 * 15 13 12 17 17 C 1.76201 * 99.99993 * 179.97438 * 16 15 13 18 18 H 1.07993 * 120.00079 * 359.97438 * 17 16 15 19 19 C 1.38801 * 119.99798 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00186 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99941 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46849 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46959 * 120.00218 * 21 19 17 24 24 H 1.48500 * 109.47021 * 240.00235 * 21 19 17 25 25 C 1.47585 * 91.01539 * 24.64210 * 12 11 10 26 26 C 1.34423 * 124.34660 * 179.97438 * 2 1 3 27 27 O 1.21280 * 124.93918 * 0.41093 * 26 2 1 28 28 H 1.08996 * 109.47429 * 89.99548 * 1 2 3 29 29 H 1.09002 * 109.47818 * 210.00332 * 1 2 3 30 30 H 1.09010 * 109.46932 * 330.00361 * 1 2 3 31 31 H 1.09003 * 110.24450 * 43.98278 * 3 2 1 32 32 H 1.08996 * 110.31684 * 282.02551 * 3 2 1 33 33 H 1.09005 * 110.97032 * 267.29367 * 4 3 2 34 34 H 1.09002 * 110.96668 * 143.53587 * 4 3 2 35 35 H 0.96993 * 120.00740 * 0.02562 * 9 7 5 36 36 H 1.09002 * 112.94617 * 334.66444 * 10 9 7 37 37 H 1.08996 * 113.77105 * 205.05282 * 11 10 9 38 38 H 1.09002 * 113.76556 * 336.45215 * 11 10 9 39 39 H 1.09001 * 109.47632 * 299.99941 * 15 13 12 40 40 H 1.08999 * 109.47223 * 59.99965 * 15 13 12 41 41 H 0.96998 * 120.00309 * 179.97438 * 20 19 17 42 42 H 1.08996 * 113.76681 * 221.05446 * 25 12 11 43 43 H 1.08997 * 113.86988 * 89.67359 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7010 0.7485 0.4357 5 6 3.6897 -0.7380 0.0101 6 1 4.2345 -1.3458 0.7325 7 6 4.2838 -0.8973 -1.3657 8 8 4.6852 0.0751 -1.9691 9 7 4.3679 -2.1202 -1.9258 10 6 4.9449 -2.2749 -3.2636 11 6 6.3526 -2.8983 -3.2658 12 7 5.6668 -4.1995 -3.3861 13 6 5.9886 -5.4695 -3.0696 14 8 5.2030 -6.3670 -3.2900 15 6 7.3243 -5.7744 -2.4421 16 16 7.4558 -7.5539 -2.1378 17 6 9.0652 -7.6240 -1.4238 18 1 9.6401 -6.7185 -1.2982 19 6 9.5943 -8.8432 -1.0238 20 7 8.8938 -9.9470 -1.1773 21 14 11.3002 -8.9175 -0.2661 22 1 11.8738 -7.5492 -0.2029 23 1 11.2086 -9.4792 1.1055 24 1 12.1741 -9.7831 -1.0982 25 6 4.4874 -3.5517 -3.9920 26 6 2.2234 -1.1098 0.0005 27 8 1.7944 -2.2442 -0.0061 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3635 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.8985 1.9383 0.7102 32 1 2.3309 1.6442 -0.9997 33 1 3.8269 0.8446 1.5142 34 1 4.4754 1.3008 -0.0966 35 1 4.0458 -2.8978 -1.4437 36 1 4.8640 -1.3717 -3.8684 37 1 6.9489 -2.6335 -4.1389 38 1 6.8910 -2.7706 -2.3267 39 1 8.1221 -5.4607 -3.1152 40 1 7.4132 -5.2372 -1.4979 41 1 9.2637 -10.7991 -0.8981 42 1 3.5367 -3.9457 -3.6328 43 1 4.5340 -3.4782 -5.0785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688635244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:23 Heat of formation + Delta-G solvation = -56.833863 kcal Electronic energy + Delta-G solvation = -26929.735991 eV Core-core repulsion = 22909.970002 eV Total energy + Delta-G solvation = -4019.765989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.51604 -40.40509 -38.98797 -37.48376 -36.77386 -33.95987 -33.24518 -32.43214 -30.41115 -28.68068 -27.55904 -27.18953 -26.29667 -25.45118 -23.57944 -21.63678 -21.04456 -20.04303 -19.07404 -18.29291 -17.69925 -17.23231 -16.75608 -16.60785 -16.14046 -15.86819 -15.36688 -15.34299 -14.88074 -14.80628 -14.34450 -14.20748 -13.99607 -13.81417 -13.57536 -13.20963 -13.12093 -13.01425 -12.89475 -12.72106 -12.59630 -12.05073 -11.97920 -11.87309 -11.73849 -11.40609 -11.07308 -11.01403 -10.75873 -10.53895 -10.19431 -9.81600 -9.56044 -9.32203 -9.22042 -9.07799 -8.65557 -8.23715 -6.50833 -6.21987 -3.92771 1.83158 2.16513 2.51114 2.71003 2.77221 3.06389 3.21396 3.24098 3.30517 3.54454 3.72207 3.89210 4.10493 4.19650 4.21900 4.43834 4.52387 4.59680 4.76218 4.90268 4.90851 4.97928 5.01628 5.08628 5.13241 5.23454 5.26944 5.35374 5.37039 5.43947 5.48275 5.51709 5.55789 5.87853 5.95949 5.97558 6.13611 6.13672 6.53395 7.06645 7.59552 7.62913 7.73419 7.77537 8.35162 8.52628 9.23285 10.85508 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.002271 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.497620 B =12328.544677 C =12658.614711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.620 5.620 3 C 0.101 3.899 4 C -0.118 4.118 5 C -0.152 4.152 6 H 0.137 0.863 7 C 0.539 3.461 8 O -0.529 6.529 9 N -0.701 5.701 10 C 0.108 3.892 11 C 0.092 3.908 12 N -0.652 5.652 13 C 0.555 3.445 14 O -0.513 6.513 15 C -0.145 4.145 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.102 3.898 26 C 0.526 3.474 27 O -0.514 6.514 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.413 0.587 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.268 0.732 42 H 0.087 0.913 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.225 27.879 1.239 30.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.355 5.355 3 C -0.022 4.022 4 C -0.155 4.155 5 C -0.177 4.177 6 H 0.154 0.846 7 C 0.324 3.676 8 O -0.406 6.406 9 N -0.352 5.352 10 C 0.001 3.999 11 C -0.032 4.032 12 N -0.392 5.392 13 C 0.345 3.655 14 O -0.386 6.386 15 C -0.295 4.295 16 S 0.166 5.834 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.022 4.022 26 C 0.312 3.688 27 O -0.389 6.389 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.250 0.750 36 H 0.137 0.863 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.394 26.205 0.556 29.903 hybrid contribution 1.924 0.553 0.980 2.228 sum -12.470 26.757 1.536 29.560 Atomic orbital electron populations 1.21596 0.77394 1.03390 1.02225 1.48129 1.06813 1.07288 1.73256 1.22191 0.90246 0.87133 1.02636 1.22610 0.97784 0.92390 1.02766 1.22178 0.96103 1.01611 0.97771 0.84562 1.19714 0.78281 0.83083 0.86562 1.90703 1.48586 1.38324 1.62945 1.45651 1.62083 1.09616 1.17885 1.22506 0.93748 0.99212 0.84398 1.23662 0.95816 0.80556 1.03201 1.50140 1.19624 1.05793 1.63674 1.20067 0.88358 0.79693 0.77381 1.90726 1.51234 1.43630 1.53059 1.23466 0.95647 1.07633 1.02761 1.85421 1.22780 0.94881 1.80317 1.22889 1.01908 0.96355 1.47069 0.90902 1.25004 0.98541 0.94663 0.95431 1.70029 1.37124 0.98366 1.44730 0.86106 0.82276 0.78277 0.78771 1.19624 1.20547 1.20547 1.23433 0.91729 0.88249 0.98788 1.20269 0.87801 0.84720 0.76051 1.90806 1.77951 1.20698 1.49429 0.92338 0.90389 0.90747 0.89844 0.90380 0.88997 0.87054 0.75033 0.86251 0.88521 0.89568 0.89347 0.89424 0.92217 0.89505 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 10.96 59.85 0.66 1.20 16 2 N -0.62 -4.64 3.33 -180.29 -0.60 -5.24 16 3 C 0.10 0.50 7.35 -3.12 -0.02 0.48 16 4 C -0.12 -0.62 6.50 -25.10 -0.16 -0.78 16 5 C -0.15 -1.20 3.33 -91.79 -0.31 -1.51 16 6 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 7 C 0.54 5.27 7.16 -10.99 -0.08 5.19 16 8 O -0.53 -6.06 15.09 5.56 0.08 -5.98 16 9 N -0.70 -7.02 5.35 -55.34 -0.30 -7.32 16 10 C 0.11 1.00 4.40 -70.14 -0.31 0.69 16 11 C 0.09 0.94 8.42 -2.97 -0.03 0.91 16 12 N -0.65 -9.20 3.61 -178.54 -0.64 -9.84 16 13 C 0.56 10.87 8.07 -10.99 -0.09 10.78 16 14 O -0.51 -12.17 16.59 5.55 0.09 -12.08 16 15 C -0.14 -3.02 5.91 36.00 0.21 -2.81 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 21 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.10 1.09 8.58 -2.97 -0.03 1.07 16 26 C 0.53 5.28 7.31 -10.86 -0.08 5.20 16 27 O -0.51 -7.10 17.59 5.56 0.10 -7.00 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.52 7.93 -51.93 -0.41 0.11 16 30 H 0.07 0.23 8.14 -51.92 -0.42 -0.20 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.11 0.64 6.96 -51.93 -0.36 0.28 16 35 H 0.41 4.52 8.74 -40.82 -0.36 4.17 16 36 H 0.12 0.99 7.51 -51.93 -0.39 0.60 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 40 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 384.17 15.07 5.79 5.79 Total: -1.00 -38.73 384.17 -8.15 -46.88 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.14 Total: 0.41 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -0.03 Total: 7.37 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.81 Total: -48.03 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: 0.27 Total: -25.06 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.73 -8.15 -46.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688635244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.951 kcal (2) G-P(sol) polarization free energy of solvation -38.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds