Wall clock time and date at job start Tue Mar 31 2020 23:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.47319 * 2 1 4 4 C 1.42896 * 114.00299 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.91563 * 26.09063 * 4 3 2 6 6 C 1.55121 * 111.16296 * 262.16894 * 4 3 2 7 7 N 1.47425 * 104.94720 * 205.12802 * 6 4 3 8 8 C 1.34773 * 125.65181 * 204.03979 * 7 6 4 9 9 O 1.21648 * 120.00055 * 179.97438 * 8 7 6 10 10 C 1.47184 * 120.00089 * 359.95685 * 8 7 6 11 11 C 1.35089 * 122.48860 * 180.02562 * 10 8 7 12 12 S 1.76183 * 108.21978 * 180.02562 * 11 10 8 13 13 C 1.76060 * 90.15942 * 359.97438 * 12 11 10 14 14 O 1.35485 * 125.17820 * 179.97438 * 13 12 11 15 15 N 1.29258 * 109.63812 * 359.73238 * 13 12 11 16 16 C 1.47025 * 108.69834 * 24.00105 * 7 6 4 17 17 C 1.54322 * 107.27238 * 358.94200 * 16 7 6 18 18 H 1.09012 * 110.71855 * 96.34581 * 17 16 7 19 19 C 1.53001 * 110.72148 * 219.43771 * 17 16 7 20 20 N 1.46496 * 109.47205 * 291.16242 * 19 17 16 21 21 C 1.36945 * 119.99718 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 H 1.09005 * 109.46849 * 300.00160 * 1 2 3 30 30 H 1.08999 * 109.46808 * 59.99455 * 1 2 3 31 31 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47013 * 239.99815 * 2 1 3 33 33 H 1.08997 * 109.46968 * 119.99782 * 2 1 3 34 34 H 1.09005 * 110.42314 * 86.19639 * 6 4 3 35 35 H 1.09004 * 110.30302 * 323.99620 * 6 4 3 36 36 H 1.08004 * 125.88720 * 0.02562 * 11 10 8 37 37 H 0.96703 * 114.00865 * 0.02562 * 14 13 12 38 38 H 1.08998 * 109.88524 * 239.51957 * 16 7 6 39 39 H 1.09005 * 109.88100 * 118.36200 * 16 7 6 40 40 H 1.08997 * 109.46922 * 171.15284 * 19 17 16 41 41 H 1.09000 * 109.46483 * 51.16103 * 19 17 16 42 42 H 0.96996 * 120.00499 * 359.97438 * 20 19 17 43 43 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8909 0.5793 -0.4487 6 6 3.9742 1.7006 1.4323 7 7 5.2637 2.3887 1.2396 8 6 6.2883 2.3970 2.1151 9 8 7.3104 3.0008 1.8496 10 6 6.1704 1.6758 3.3927 11 6 7.1650 1.6511 4.3065 12 16 6.6274 0.6877 5.6801 13 6 5.0840 0.4026 4.8823 14 8 4.0647 -0.3292 5.3932 15 7 5.0696 1.0021 3.7372 16 6 5.2472 3.0636 -0.0665 17 6 3.8861 2.7545 -0.7248 18 1 3.1788 3.5648 -0.5472 19 6 4.0545 2.5049 -2.2249 20 7 4.4246 3.7568 -2.8897 21 6 4.6306 3.7782 -4.2434 22 1 4.5206 2.8721 -4.8207 23 6 4.9807 4.9644 -4.8735 24 7 5.1153 6.0686 -4.1698 25 14 5.2625 4.9935 -6.7199 26 1 5.6224 6.3703 -7.1441 27 1 6.3669 4.0634 -7.0668 28 1 4.0214 4.5700 -7.4167 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.1240 0.7512 1.9467 35 1 3.2877 2.3323 1.9960 36 1 8.1244 2.1380 4.2113 37 1 4.2475 -0.7028 6.2662 38 1 6.0558 2.6833 -0.6907 39 1 5.3568 4.1394 0.0707 40 1 3.1161 2.1368 -2.6396 41 1 4.8376 1.7636 -2.3841 42 1 4.5237 4.5705 -2.3712 43 1 5.3603 6.8974 -4.6100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689071279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:40 Heat of formation + Delta-G solvation = -39.440785 kcal Electronic energy + Delta-G solvation = -27534.822866 eV Core-core repulsion = 23515.811097 eV Total energy + Delta-G solvation = -4019.011768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.81651 -39.56458 -38.55774 -37.61441 -36.51350 -34.62850 -32.23406 -31.24468 -30.47192 -29.64634 -28.20920 -26.50437 -24.76774 -23.66302 -22.81519 -22.10259 -21.59715 -20.64435 -19.95159 -18.98016 -17.92684 -17.14505 -17.01467 -16.31500 -16.15386 -15.94884 -15.67083 -15.41670 -15.10679 -14.64979 -14.27288 -14.00369 -13.46514 -13.32230 -13.28214 -13.08929 -12.95640 -12.74275 -12.63152 -12.38913 -12.30802 -12.00054 -11.63521 -11.38879 -11.09530 -10.97324 -10.70536 -10.68953 -10.35751 -10.23259 -10.09697 -10.02220 -9.98113 -9.69700 -9.26338 -9.07674 -8.82479 -8.49581 -6.87592 -5.70493 -2.99693 0.14732 0.38050 0.91502 1.72275 2.39360 2.97390 3.19977 3.48817 3.52655 3.54049 3.72814 4.26912 4.59156 4.65043 4.78106 4.80455 4.93019 5.05713 5.09031 5.23378 5.29147 5.35470 5.42122 5.56873 5.63164 5.72576 5.85663 5.88017 5.96864 6.00698 6.10248 6.11300 6.13738 6.31939 6.36560 6.40001 6.76159 6.82028 7.12672 7.31871 7.49758 7.74538 8.07475 8.47731 9.58961 10.15514 10.50534 11.52220 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.002902 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.761962 B = 9645.754810 C =11639.934106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.082 3.918 5 H 0.079 0.921 6 C 0.087 3.913 7 N -0.594 5.594 8 C 0.602 3.398 9 O -0.527 6.527 10 C 0.053 3.947 11 C -0.176 4.176 12 S 0.047 5.953 13 C 0.288 3.712 14 O -0.418 6.418 15 N -0.467 5.467 16 C 0.118 3.882 17 C -0.101 4.101 18 H 0.097 0.903 19 C 0.166 3.834 20 N -0.731 5.731 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.291 1.291 27 H -0.286 1.286 28 H -0.286 1.286 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.196 0.804 37 H 0.418 0.582 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.028 0.972 41 H 0.020 0.980 42 H 0.385 0.615 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.671 -16.766 24.462 29.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.284 6.284 4 C 0.022 3.978 5 H 0.097 0.903 6 C -0.036 4.036 7 N -0.327 5.327 8 C 0.387 3.613 9 O -0.404 6.404 10 C -0.077 4.077 11 C -0.317 4.317 12 S 0.294 5.706 13 C -0.033 4.033 14 O -0.217 6.217 15 N -0.197 5.197 16 C -0.004 4.004 17 C -0.121 4.121 18 H 0.115 0.885 19 C 0.038 3.962 20 N -0.376 5.376 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.213 1.213 28 H -0.213 1.213 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.213 0.787 37 H 0.273 0.727 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.046 0.954 41 H 0.038 0.962 42 H 0.218 0.782 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.586 -16.575 24.346 29.566 hybrid contribution 0.554 0.297 -0.905 1.102 sum -2.032 -16.278 23.441 28.611 Atomic orbital electron populations 1.21732 0.93845 1.01962 1.03244 1.22529 0.95558 0.84026 1.00020 1.87951 1.19653 1.26140 1.94643 1.23291 0.81501 0.98739 0.94267 0.90326 1.23002 0.84188 0.99139 0.97320 1.48125 1.14929 1.50900 1.18756 1.16586 0.82693 0.80628 0.81442 1.90878 1.28706 1.44412 1.76405 1.20018 0.88602 1.01315 0.97778 1.26812 1.05254 1.05079 0.94525 1.85364 1.12926 1.49946 1.22382 1.25498 0.89735 0.96007 0.92067 1.84739 1.34249 1.64047 1.38676 1.66461 1.26168 1.13353 1.13754 1.22154 0.98197 0.98277 0.81759 1.22584 0.95505 0.97283 0.96706 0.88493 1.20626 0.97433 0.90613 0.87528 1.42331 1.83682 1.05908 1.05662 1.19157 1.39368 0.94643 0.83977 0.91250 1.24738 1.02565 0.95663 0.97913 1.69652 1.54538 0.99286 1.34590 0.86265 0.77931 0.76517 0.85445 1.21705 1.21294 1.21306 0.91953 0.91638 0.91365 0.93209 0.93483 0.88148 0.90548 0.78660 0.72660 0.89951 0.90277 0.95441 0.96222 0.78162 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.06 0.62 6.49 37.16 0.24 0.86 16 3 O -0.37 -5.28 10.16 -35.23 -0.36 -5.63 16 4 C 0.08 1.18 3.00 -24.47 -0.07 1.10 16 5 H 0.08 1.07 7.74 -51.93 -0.40 0.67 16 6 C 0.09 1.21 5.76 -2.41 -0.01 1.20 16 7 N -0.59 -9.39 3.33 -171.73 -0.57 -9.97 16 8 C 0.60 9.66 7.82 -12.63 -0.10 9.56 16 9 O -0.53 -9.93 16.99 5.23 0.09 -9.85 16 10 C 0.05 0.67 6.60 -84.60 -0.56 0.11 16 11 C -0.18 -1.74 10.84 29.61 0.32 -1.42 16 12 S 0.05 0.30 23.38 -107.50 -2.51 -2.21 16 13 C 0.29 2.38 8.91 51.68 0.46 2.85 16 14 O -0.42 -2.35 13.64 -18.15 -0.25 -2.59 16 15 N -0.47 -5.46 7.19 -11.34 -0.08 -5.54 16 16 C 0.12 2.07 6.27 -3.06 -0.02 2.05 16 17 C -0.10 -1.75 2.71 -88.79 -0.24 -1.99 16 18 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 19 C 0.17 3.41 5.59 -4.04 -0.02 3.39 16 20 N -0.73 -18.88 5.48 -59.91 -0.33 -19.20 16 21 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 25 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 1.33 6.00 -51.93 -0.31 1.01 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.20 1.74 8.01 -52.48 -0.42 1.31 16 37 H 0.42 -0.27 9.03 45.56 0.41 0.14 16 38 H 0.08 1.57 7.73 -51.93 -0.40 1.17 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 42 H 0.38 10.42 7.60 -40.82 -0.31 10.11 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -35.88 377.35 -7.69 -43.57 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.20 Total: 6.78 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 0.13 Total: 9.16 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -0.26 Total: -62.76 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.52 Total: -18.07 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -2.51 Total: -2.21 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.88 -7.69 -43.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689071279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.132 kcal (2) G-P(sol) polarization free energy of solvation -35.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds