Wall clock time and date at job start Tue Mar 31 2020 23:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 5 5 C 1.34773 * 119.99910 * 275.00232 * 4 2 1 6 6 O 1.21288 * 120.00271 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99928 * 179.97438 * 5 4 2 8 8 S 1.81000 * 109.47331 * 179.97438 * 7 5 4 9 9 C 1.76196 * 100.00488 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99536 * 0.02562 * 9 8 7 11 11 C 1.38795 * 120.00410 * 180.02562 * 9 8 7 12 12 N 1.31634 * 119.99884 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00262 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47021 * 59.99521 * 13 11 9 15 15 H 1.48493 * 109.47221 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46623 * 299.99932 * 13 11 9 17 17 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 18 18 H 1.09004 * 109.46881 * 174.99844 * 17 2 1 19 19 C 1.53000 * 109.47341 * 295.00521 * 17 2 1 20 20 N 1.46502 * 109.47004 * 55.00263 * 17 2 1 21 21 C 1.34779 * 119.99830 * 154.99864 * 20 17 2 22 22 O 1.21282 * 120.00222 * 359.97438 * 21 20 17 23 23 C 1.50700 * 119.99647 * 180.02562 * 21 20 17 24 24 C 1.50698 * 109.47080 * 179.97438 * 23 21 20 25 25 C 1.41377 * 126.80429 * 124.99588 * 24 23 21 26 26 C 1.35454 * 103.98715 * 180.02562 * 25 24 23 27 27 O 1.34038 * 106.44744 * 359.97438 * 26 25 24 28 28 N 1.20921 * 111.56541 * 359.71131 * 27 26 25 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 0.96995 * 120.00293 * 94.99410 * 4 2 1 33 33 H 1.09000 * 109.47712 * 299.99892 * 7 5 4 34 34 H 1.08995 * 109.47183 * 60.00106 * 7 5 4 35 35 H 0.97002 * 119.99766 * 179.97438 * 12 11 9 36 36 H 1.09002 * 109.46818 * 300.00038 * 19 17 2 37 37 H 1.08994 * 109.47281 * 59.99487 * 19 17 2 38 38 H 1.09004 * 109.47031 * 180.02562 * 19 17 2 39 39 H 0.97001 * 120.00062 * 334.99906 * 20 17 2 40 40 H 1.09006 * 109.47178 * 299.99768 * 23 21 20 41 41 H 1.09003 * 109.47372 * 60.00192 * 23 21 20 42 42 H 1.08003 * 128.00691 * 359.97420 * 25 24 23 43 43 H 1.07998 * 126.77720 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1587 2.4115 7 6 2.6488 -0.7288 3.5877 8 16 2.7105 0.4344 4.9731 9 6 3.3135 -0.6307 6.2405 10 1 3.5228 -1.6672 6.0205 11 6 3.5195 -0.1379 7.5216 12 7 3.2640 1.1253 7.7898 13 14 4.1596 -1.2670 8.8651 14 1 5.4862 -1.8044 8.4697 15 1 4.2928 -0.5034 10.1316 16 1 3.2089 -2.3908 9.0616 17 6 2.0401 -0.7213 -1.2492 18 1 3.1264 -0.6443 -1.2951 19 6 1.6352 -2.1955 -1.1880 20 7 1.4559 -0.1037 -2.4423 21 6 2.0914 -0.1939 -3.6275 22 8 3.1470 -0.7859 -3.7061 23 6 1.4908 0.4420 -4.8547 24 6 2.3913 0.1986 -6.0383 25 6 2.0305 -0.3970 -7.2687 26 6 3.1789 -0.3862 -7.9869 27 8 4.1101 0.1781 -7.2051 28 7 3.6541 0.5007 -6.1327 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 1.9759 -1.5506 3.8326 34 1 3.6479 -1.1213 3.3987 35 1 3.4076 1.4696 8.6852 36 1 2.0698 -2.6550 -0.3002 37 1 0.5490 -2.2724 -1.1420 38 1 1.9990 -2.7094 -2.0777 39 1 0.6119 0.3701 -2.3794 40 1 0.5108 0.0054 -5.0475 41 1 1.3853 1.5148 -4.6935 42 1 1.0634 -0.7742 -7.5667 43 1 3.3171 -0.7587 -8.9911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701111742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:34 Heat of formation + Delta-G solvation = -11.510161 kcal Electronic energy + Delta-G solvation = -26139.013613 eV Core-core repulsion = 22121.213008 eV Total energy + Delta-G solvation = -4017.800606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.27355 -40.46048 -39.33128 -37.07442 -34.97898 -34.09180 -32.43197 -32.13766 -31.57341 -30.19713 -29.13548 -28.49256 -25.50794 -24.96948 -23.52324 -22.61862 -21.03799 -20.52113 -19.97060 -18.28658 -18.08761 -17.89378 -17.34973 -16.64464 -16.29473 -15.81937 -15.58932 -15.33101 -14.92635 -14.80450 -14.64899 -14.13916 -13.98134 -13.78855 -13.46773 -13.35882 -13.20441 -13.01613 -12.65567 -12.56163 -12.44482 -12.06036 -11.93854 -11.62679 -11.24235 -11.10132 -11.04655 -11.03762 -10.77167 -10.62546 -10.15644 -9.97385 -9.83333 -9.49964 -9.41380 -9.07406 -8.99439 -8.25306 -6.50776 -6.21930 -3.92740 1.18824 1.79962 2.27324 2.64318 2.93140 3.04115 3.10107 3.23602 3.27900 3.32311 3.67574 3.70719 4.09801 4.20176 4.28155 4.46097 4.62589 4.68315 4.75983 4.83704 4.88531 5.04144 5.08355 5.13154 5.14654 5.17908 5.27437 5.38477 5.45613 5.56921 5.61287 5.66386 5.76996 5.87043 5.90640 6.09412 6.12552 6.15418 6.56943 7.08433 7.58897 7.63722 7.85980 7.95763 8.34668 8.55964 9.23343 10.85415 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029497 B = 0.001672 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.010691 B =16739.260475 C =16966.325000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.138 3.862 3 H 0.094 0.906 4 N -0.732 5.732 5 C 0.535 3.465 6 O -0.515 6.515 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.537 4.537 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.137 3.863 18 H 0.095 0.905 19 C -0.167 4.167 20 N -0.722 5.722 21 C 0.516 3.484 22 O -0.522 6.522 23 C -0.062 4.062 24 C 0.021 3.979 25 C -0.230 4.230 26 C -0.062 4.062 27 O 0.106 5.894 28 N -0.335 5.335 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.398 0.602 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.269 0.731 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.402 0.598 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.172 0.828 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.996 -5.804 -31.926 33.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.032 3.968 3 H 0.112 0.888 4 N -0.389 5.389 5 C 0.321 3.679 6 O -0.389 6.389 7 C -0.305 4.305 8 S 0.168 5.832 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C 0.031 3.969 18 H 0.113 0.887 19 C -0.225 4.225 20 N -0.377 5.377 21 C 0.301 3.699 22 O -0.396 6.396 23 C -0.103 4.103 24 C -0.139 4.139 25 C -0.251 4.251 26 C -0.144 4.144 27 O 0.036 5.964 28 N -0.035 5.035 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.234 0.766 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.238 0.762 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.189 0.811 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.818 -3.523 -30.897 31.836 hybrid contribution -0.404 -2.758 0.361 2.811 sum -7.222 -6.281 -30.536 32.000 Atomic orbital electron populations 1.22267 0.95201 1.02511 1.02608 1.20967 0.94413 0.97784 0.83671 0.88788 1.46080 1.69624 1.14026 1.09123 1.20331 0.76668 0.87209 0.83693 1.90703 1.48142 1.15692 1.84380 1.23539 1.03753 1.04912 0.98280 1.85382 1.86311 1.12825 0.98711 1.22830 1.51146 0.98146 0.96380 0.90957 1.24987 0.95060 0.95540 0.97940 1.70009 1.45452 1.13221 1.21609 0.86223 0.79333 0.80004 0.79942 1.19934 1.20799 1.19941 1.21109 0.99666 0.92598 0.83481 0.88660 1.22238 1.02193 0.95374 1.02686 1.46018 1.26174 1.57615 1.07890 1.20312 0.85003 0.80384 0.84235 1.90776 1.21808 1.41761 1.85275 1.19984 0.97998 1.03704 0.88598 1.22844 0.91834 1.02403 0.96812 1.22682 1.01375 1.07139 0.93933 1.26023 0.88068 1.00750 0.99534 1.84895 1.36247 1.56677 1.18613 1.73928 1.11936 1.17499 1.00155 0.92216 0.91836 0.91007 0.76563 0.89153 0.89139 0.92122 0.91380 0.91657 0.91757 0.76190 0.86481 0.86734 0.81083 0.76746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 9.00 37.16 0.33 -1.19 16 2 C 0.14 1.49 2.62 -67.93 -0.18 1.31 16 3 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 4 N -0.73 -9.33 4.99 -53.80 -0.27 -9.60 16 5 C 0.53 9.67 7.81 -10.99 -0.09 9.59 16 6 O -0.52 -11.32 15.53 5.55 0.09 -11.23 16 7 C -0.15 -3.07 6.16 36.01 0.22 -2.84 16 8 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 9 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 10 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 11 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 12 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 13 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 C 0.14 1.28 2.62 -67.93 -0.18 1.10 16 18 H 0.10 1.13 7.58 -51.93 -0.39 0.74 16 19 C -0.17 -1.35 9.00 37.16 0.33 -1.02 16 20 N -0.72 -5.49 4.99 -53.80 -0.27 -5.76 16 21 C 0.52 4.95 7.79 -10.98 -0.09 4.87 16 22 O -0.52 -7.50 15.27 5.56 0.08 -7.41 16 23 C -0.06 -0.39 6.30 -29.04 -0.18 -0.57 16 24 C 0.02 0.18 6.10 -82.10 -0.50 -0.32 16 25 C -0.23 -1.35 11.12 -39.38 -0.44 -1.79 16 26 C -0.06 -0.34 12.30 29.74 0.37 0.03 16 27 O 0.11 1.00 11.20 17.18 0.19 1.20 16 28 N -0.33 -3.92 11.48 33.43 0.38 -3.54 16 29 H 0.06 0.37 6.29 -51.93 -0.33 0.04 16 30 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.40 4.07 6.58 -40.82 -0.27 3.80 16 33 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 34 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.07 0.51 6.29 -51.93 -0.33 0.18 16 37 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.40 1.94 6.58 -40.82 -0.27 1.67 16 40 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.17 0.46 8.06 -52.48 -0.42 0.04 16 43 H 0.22 0.16 8.06 -52.49 -0.42 -0.26 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -39.48 379.01 -6.36 -45.83 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.59 Total: 1.41 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.19 Total: -3.79 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.58 Total: -44.32 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.36 Total: -17.45 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -39.48 -6.36 -45.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701111742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.324 kcal (2) G-P(sol) polarization free energy of solvation -39.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds