Wall clock time and date at job start Tue Mar 31 2020 23:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 2 8 8 S 1.81000 * 109.47389 * 180.02562 * 7 5 4 9 9 C 1.76198 * 99.99715 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00516 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99710 * 179.97438 * 9 8 7 12 12 N 1.31634 * 120.00163 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00011 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46850 * 90.00589 * 13 11 9 15 15 H 1.48498 * 109.47329 * 210.00016 * 13 11 9 16 16 H 1.48499 * 109.47220 * 330.01003 * 13 11 9 17 17 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 18 18 H 1.08995 * 109.47266 * 300.00052 * 17 2 1 19 19 C 1.53004 * 109.46947 * 179.97438 * 17 2 1 20 20 N 1.46507 * 109.47137 * 60.00123 * 17 2 1 21 21 C 1.34775 * 119.99880 * 205.00250 * 20 17 2 22 22 O 1.21273 * 120.00415 * 359.97438 * 21 20 17 23 23 C 1.50702 * 119.99789 * 179.97438 * 21 20 17 24 24 C 1.50693 * 109.47154 * 179.97438 * 23 21 20 25 25 C 1.41376 * 126.80604 * 124.99819 * 24 23 21 26 26 C 1.35452 * 103.99113 * 179.97438 * 25 24 23 27 27 O 1.34043 * 106.44436 * 0.02562 * 26 25 24 28 28 N 1.20930 * 111.56567 * 359.70697 * 27 26 25 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 32 32 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 33 33 H 1.08998 * 109.46954 * 300.00581 * 7 5 4 34 34 H 1.09002 * 109.46946 * 59.99717 * 7 5 4 35 35 H 0.96991 * 119.99795 * 179.97438 * 12 11 9 36 36 H 1.08999 * 109.46966 * 60.00966 * 19 17 2 37 37 H 1.09005 * 109.46425 * 179.97438 * 19 17 2 38 38 H 1.08994 * 109.47427 * 299.99790 * 19 17 2 39 39 H 0.97000 * 119.99602 * 24.99287 * 20 17 2 40 40 H 1.09004 * 109.46965 * 299.99699 * 23 21 20 41 41 H 1.09000 * 109.47154 * 59.99133 * 23 21 20 42 42 H 1.08006 * 128.00551 * 0.03770 * 25 24 23 43 43 H 1.07998 * 126.78047 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8638 1.1599 2.4102 7 6 2.6605 -0.7257 3.5847 8 16 2.7270 0.4388 4.9688 9 6 3.3357 -0.6251 6.2346 10 1 3.5447 -1.6616 6.0147 11 6 3.5475 -0.1307 7.5142 12 7 3.2932 1.1328 7.7821 13 14 4.1921 -1.2586 8.8564 14 1 5.6767 -1.2203 8.8645 15 1 3.6782 -0.8047 10.1736 16 1 3.7342 -2.6474 8.5982 17 6 2.0400 -0.7213 -1.2492 18 1 1.6766 -1.7489 -1.2492 19 6 3.5700 -0.7207 -1.2495 20 7 1.5516 -0.0307 -2.4455 21 6 1.4229 -0.7031 -3.6064 22 8 1.7117 -1.8797 -3.6610 23 6 0.9200 0.0072 -4.8367 24 6 0.8700 -0.9609 -5.9904 25 6 -0.2511 -1.2577 -6.7991 26 6 0.2147 -2.1742 -7.6810 27 8 1.5058 -2.3700 -7.3784 28 7 1.8519 -1.6858 -6.4433 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2491 -1.6318 1.1526 33 1 1.9894 -1.5476 3.8337 34 1 3.6590 -1.1179 3.3911 35 1 3.4409 1.4781 8.6764 36 1 3.9337 -1.2344 -0.3596 37 1 3.9333 -1.2350 -2.1393 38 1 3.9330 0.3070 -1.2498 39 1 1.3209 0.9105 -2.4018 40 1 -0.0794 0.3990 -4.6471 41 1 1.5922 0.8296 -5.0817 42 1 -1.2479 -0.8476 -6.7304 43 1 -0.3440 -2.6533 -8.4714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701111744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:40 Heat of formation + Delta-G solvation = -16.557835 kcal Electronic energy + Delta-G solvation = -26134.020952 eV Core-core repulsion = 22116.001463 eV Total energy + Delta-G solvation = -4018.019489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.28405 -40.40833 -39.32388 -36.92429 -34.98628 -34.12368 -32.44149 -32.14735 -31.51877 -30.44280 -29.26157 -28.45087 -25.49963 -24.22276 -23.52553 -22.55347 -21.09793 -20.87745 -20.18752 -18.27450 -18.08738 -17.88241 -17.33715 -16.78937 -15.94150 -15.90728 -15.76759 -15.11988 -14.92654 -14.81229 -14.30878 -14.08045 -14.01392 -13.73905 -13.59203 -13.42556 -13.22666 -12.89089 -12.70760 -12.47524 -12.45662 -12.02997 -11.83297 -11.64420 -11.55117 -11.07285 -11.03772 -10.92525 -10.76771 -10.63787 -10.17276 -9.98639 -9.83091 -9.53701 -9.43244 -9.08388 -8.96341 -8.26088 -6.51779 -6.23146 -3.93779 1.17289 1.78728 2.27332 2.60532 2.91612 3.03431 3.11109 3.21747 3.28006 3.33445 3.66365 3.72232 4.09079 4.19176 4.24503 4.46718 4.67749 4.70380 4.77195 4.83104 4.93130 5.03794 5.09789 5.12252 5.24676 5.26506 5.30942 5.47840 5.50077 5.56921 5.62943 5.67541 5.85626 5.86948 6.01136 6.09685 6.11476 6.13412 6.56701 7.08640 7.58445 7.63338 7.85278 7.93773 8.33997 8.55003 9.22450 10.84280 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.038403 B = 0.001642 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.935008 B =17048.778657 C =17394.316416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.093 0.907 4 N -0.731 5.731 5 C 0.536 3.464 6 O -0.516 6.516 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.138 3.862 18 H 0.093 0.907 19 C -0.164 4.164 20 N -0.721 5.721 21 C 0.517 3.483 22 O -0.523 6.523 23 C -0.062 4.062 24 C 0.022 3.978 25 C -0.229 4.229 26 C -0.062 4.062 27 O 0.105 5.895 28 N -0.336 5.336 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.399 0.601 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.268 0.732 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.403 0.597 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.172 0.828 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 -3.730 -30.905 32.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.111 0.889 4 N -0.386 5.386 5 C 0.322 3.678 6 O -0.390 6.390 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C 0.033 3.967 18 H 0.111 0.889 19 C -0.222 4.222 20 N -0.374 5.374 21 C 0.302 3.698 22 O -0.398 6.398 23 C -0.103 4.103 24 C -0.138 4.138 25 C -0.251 4.251 26 C -0.143 4.143 27 O 0.035 5.965 28 N -0.037 5.037 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.233 0.767 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.237 0.763 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.190 0.810 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.232 -2.612 -30.342 31.302 hybrid contribution -0.256 -1.821 0.732 1.980 sum -7.487 -4.434 -29.610 30.862 Atomic orbital electron populations 1.22189 0.94941 1.02366 1.02640 1.21003 0.94380 0.97778 0.83649 0.88896 1.45945 1.69498 1.13926 1.09205 1.20302 0.76692 0.87169 0.83591 1.90698 1.48327 1.15735 1.84244 1.23540 1.03714 1.04935 0.98284 1.85371 1.86129 1.12822 0.98960 1.22873 1.50852 0.98188 0.96520 0.90904 1.24989 0.95073 0.95539 0.97938 1.70014 1.45468 1.13197 1.21619 0.86169 0.79030 0.80198 0.80117 1.20259 1.20741 1.19692 1.21141 0.94708 0.97548 0.83334 0.88929 1.22174 0.94435 1.02746 1.02840 1.45878 1.68007 1.14156 1.09340 1.20273 0.77937 0.87475 0.84106 1.90768 1.48670 1.15796 1.84520 1.19986 1.04997 0.96529 0.88790 1.22844 0.90366 1.00687 0.99897 1.22697 1.01252 1.02884 0.98259 1.26021 0.85603 1.00349 1.02368 1.84890 1.25493 1.49230 1.36915 1.73913 1.23757 1.05720 1.00281 0.91966 0.92433 0.91291 0.76652 0.89151 0.89146 0.92178 0.91068 0.91931 0.92095 0.76272 0.86425 0.86787 0.81050 0.76734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.33 37.16 0.35 -1.28 16 2 C 0.14 1.46 2.21 -67.93 -0.15 1.31 16 3 H 0.09 1.10 7.57 -51.93 -0.39 0.71 16 4 N -0.73 -9.12 4.38 -53.81 -0.24 -9.36 16 5 C 0.54 9.49 7.82 -10.98 -0.09 9.40 16 6 O -0.52 -11.08 15.52 5.55 0.09 -11.00 16 7 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 8 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 9 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 10 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 13 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 C 0.14 1.27 2.21 -67.93 -0.15 1.12 16 18 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 19 C -0.16 -1.62 9.33 37.16 0.35 -1.27 16 20 N -0.72 -5.35 4.38 -53.80 -0.24 -5.58 16 21 C 0.52 4.79 7.79 -10.99 -0.09 4.70 16 22 O -0.52 -7.27 15.27 5.56 0.08 -7.18 16 23 C -0.06 -0.37 6.30 -29.04 -0.18 -0.56 16 24 C 0.02 0.19 6.10 -82.10 -0.50 -0.31 16 25 C -0.23 -1.33 11.12 -39.38 -0.44 -1.77 16 26 C -0.06 -0.33 12.30 29.74 0.37 0.04 16 27 O 0.10 0.96 11.20 17.17 0.19 1.15 16 28 N -0.34 -3.78 11.48 33.42 0.38 -3.40 16 29 H 0.06 0.47 7.45 -51.93 -0.39 0.09 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.40 4.04 8.39 -40.82 -0.34 3.70 16 33 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 34 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.07 0.70 7.45 -51.93 -0.39 0.31 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.40 1.92 8.39 -40.82 -0.34 1.58 16 40 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.17 0.48 8.06 -52.48 -0.42 0.05 16 43 H 0.22 0.14 8.06 -52.49 -0.42 -0.29 16 LS Contribution 386.71 15.07 5.83 5.83 Total: -1.00 -38.97 386.71 -6.53 -45.50 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.02 Total: 1.10 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -0.11 Total: -4.31 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.65 Total: -43.61 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.36 Total: -17.03 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.97 -6.53 -45.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701111744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.939 kcal (2) G-P(sol) polarization free energy of solvation -38.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds