Wall clock time and date at job start Tue Mar 31 2020 23:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 N 1.46504 * 109.46783 * 119.99750 * 2 1 3 5 5 C 1.34777 * 119.99858 * 274.99865 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.02562 * 5 4 2 8 8 C 1.50701 * 109.47355 * 180.02562 * 7 5 4 9 9 C 1.41380 * 126.79802 * 125.00111 * 8 7 5 10 10 C 1.35453 * 103.98488 * 180.02562 * 9 8 7 11 11 O 1.34040 * 106.44225 * 359.97438 * 10 9 8 12 12 N 1.20924 * 111.57179 * 359.71035 * 11 10 9 13 13 C 1.52995 * 109.47337 * 239.99704 * 2 1 3 14 14 H 1.09007 * 109.47080 * 299.99517 * 13 2 1 15 15 C 1.53000 * 109.47023 * 180.02562 * 13 2 1 16 16 N 1.46499 * 109.47455 * 60.00113 * 13 2 1 17 17 C 1.34777 * 120.00199 * 205.00257 * 16 13 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 13 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46990 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47522 * 119.99735 * 25 23 21 28 28 H 1.48500 * 109.47073 * 240.00101 * 25 23 21 29 29 H 1.09007 * 109.47256 * 60.00599 * 1 2 3 30 30 H 1.08999 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47768 * 299.99985 * 1 2 3 32 32 H 0.96991 * 120.00424 * 95.00767 * 4 2 1 33 33 H 1.08998 * 109.46954 * 300.00581 * 7 5 4 34 34 H 1.08997 * 109.46780 * 60.00140 * 7 5 4 35 35 H 1.08001 * 128.01152 * 359.96297 * 9 8 7 36 36 H 1.07997 * 126.77761 * 179.97438 * 10 9 8 37 37 H 1.09005 * 109.47473 * 179.97438 * 15 13 2 38 38 H 1.08998 * 109.46925 * 299.99562 * 15 13 2 39 39 H 1.08998 * 109.47598 * 59.99967 * 15 13 2 40 40 H 0.97000 * 119.99484 * 24.99354 * 16 13 2 41 41 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 42 42 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 43 43 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1469 -0.0182 2.3572 6 8 1.8581 1.1585 2.4117 7 6 2.6497 -0.7283 3.5876 8 6 2.6997 0.2400 4.7414 9 6 2.0791 0.0874 6.0025 10 6 2.4210 1.2130 6.6739 11 8 3.1795 1.9371 5.8390 12 7 3.3277 1.3796 4.7762 13 6 2.0400 -0.7213 -1.2491 14 1 1.6767 -1.7490 -1.2491 15 6 3.5700 -0.7218 -1.2487 16 7 1.5518 -0.0308 -2.4454 17 6 1.4231 -0.7032 -3.6063 18 8 1.7119 -1.8799 -3.6608 19 6 0.9267 0.0086 -4.8384 20 16 0.8721 -1.1529 -6.2254 21 6 0.2745 -0.0864 -7.4942 22 1 0.0644 0.9499 -7.2742 23 6 0.0746 -0.5777 -8.7769 24 7 0.3321 -1.8404 -9.0455 25 14 -0.5583 0.5531 -10.1222 26 1 -0.7678 1.9143 -9.5668 27 1 0.4347 0.6152 -11.2246 28 1 -1.8457 0.0287 -10.6446 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2490 -1.6316 1.1528 33 1 1.9776 -1.5506 3.8327 34 1 3.6490 -1.1201 3.3981 35 1 1.4721 -0.7356 6.3498 36 1 2.1382 1.4753 7.6826 37 1 3.9335 -1.2361 -2.1385 38 1 3.9337 0.3057 -1.2486 39 1 3.9330 -1.2358 -0.3588 40 1 1.3210 0.9104 -2.4018 41 1 -0.0733 0.4008 -4.6533 42 1 1.6006 0.8308 -5.0792 43 1 0.1921 -2.1839 -9.9418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701111747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:43 Heat of formation + Delta-G solvation = -16.559360 kcal Electronic energy + Delta-G solvation = -26133.277576 eV Core-core repulsion = 22115.258021 eV Total energy + Delta-G solvation = -4018.019555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.28653 -40.40725 -39.32073 -36.92305 -34.98629 -34.12171 -32.44183 -32.14963 -31.51857 -30.43960 -29.26856 -28.44643 -25.50110 -24.22620 -23.52368 -22.55324 -21.10532 -20.87119 -20.18438 -18.26225 -18.08838 -17.88898 -17.33754 -16.80738 -16.03741 -15.82942 -15.60998 -15.23081 -15.02417 -14.81484 -14.20320 -14.08230 -14.02376 -13.69242 -13.63009 -13.35239 -13.25234 -12.99670 -12.70175 -12.47251 -12.43454 -12.02334 -11.83410 -11.64499 -11.54505 -11.07944 -11.03377 -10.92108 -10.76155 -10.63969 -10.17501 -9.98744 -9.82048 -9.53891 -9.42991 -9.09187 -8.95914 -8.25541 -6.51713 -6.23324 -3.93845 1.17275 1.78696 2.26918 2.61145 2.91584 3.03369 3.11272 3.20876 3.28390 3.34113 3.66412 3.72265 4.09578 4.19000 4.24227 4.46607 4.67329 4.70731 4.76860 4.83253 4.93196 5.03868 5.09661 5.12186 5.25272 5.26241 5.31011 5.47297 5.50692 5.56589 5.63482 5.66945 5.85943 5.87167 5.98636 6.10780 6.11643 6.13941 6.57133 7.08567 7.58747 7.63743 7.85221 7.93839 8.34185 8.55332 9.22447 10.84151 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.038675 B = 0.001638 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.814483 B =17088.858016 C =17361.784387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 H 0.093 0.907 4 N -0.721 5.721 5 C 0.517 3.483 6 O -0.523 6.523 7 C -0.062 4.062 8 C 0.022 3.978 9 C -0.230 4.230 10 C -0.062 4.062 11 O 0.105 5.895 12 N -0.336 5.336 13 C 0.138 3.862 14 H 0.093 0.907 15 C -0.163 4.163 16 N -0.731 5.731 17 C 0.536 3.464 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.403 0.597 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.172 0.828 36 H 0.216 0.784 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 2.570 32.092 32.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.111 0.889 4 N -0.374 5.374 5 C 0.302 3.698 6 O -0.398 6.398 7 C -0.103 4.103 8 C -0.138 4.138 9 C -0.251 4.251 10 C -0.143 4.143 11 O 0.035 5.965 12 N -0.036 5.036 13 C 0.032 3.968 14 H 0.111 0.889 15 C -0.222 4.222 16 N -0.386 5.386 17 C 0.322 3.678 18 O -0.390 6.390 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.092 0.908 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.237 0.763 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.189 0.811 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.731 1.986 30.999 31.421 hybrid contribution -1.353 1.396 -0.316 1.969 sum 3.378 3.382 30.683 31.053 Atomic orbital electron populations 1.22169 0.94460 1.02709 1.02777 1.21141 0.94649 0.97628 0.83361 0.88894 1.45872 1.68014 1.14155 1.09327 1.20277 0.77955 0.87421 0.84140 1.90771 1.48692 1.15651 1.84645 1.19985 1.04824 0.96396 0.89092 1.22845 0.99716 0.94821 0.96424 1.22695 1.06642 1.01814 0.93955 1.26021 0.97213 0.92234 0.98877 1.84888 1.52931 1.41135 1.17561 1.73910 1.19901 1.08552 1.01277 1.20998 0.94401 0.97741 0.83635 0.88906 1.22192 0.94922 1.02429 1.02647 1.45946 1.69516 1.13971 1.09139 1.20301 0.76653 0.87190 0.83608 1.90698 1.48184 1.15767 1.84362 1.23538 1.03786 1.04900 0.98239 1.85375 1.86527 1.12880 0.98545 1.22914 1.51014 0.98214 0.96213 0.90848 1.24991 0.95066 0.95546 0.97963 1.70027 1.45606 1.13280 1.21392 0.86116 0.78510 0.80155 0.80718 1.19609 1.20555 1.20562 0.91046 0.92091 0.92047 0.76273 0.86445 0.86767 0.81061 0.76737 0.91282 0.92393 0.91974 0.76651 0.89153 0.89139 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.33 37.16 0.35 -1.19 16 2 C 0.14 1.27 2.21 -67.93 -0.15 1.12 16 3 H 0.09 0.99 7.58 -51.93 -0.39 0.59 16 4 N -0.72 -5.34 4.38 -53.81 -0.24 -5.58 16 5 C 0.52 4.79 7.79 -10.98 -0.09 4.70 16 6 O -0.52 -7.27 15.27 5.55 0.08 -7.18 16 7 C -0.06 -0.37 6.30 -29.03 -0.18 -0.56 16 8 C 0.02 0.19 6.10 -82.10 -0.50 -0.31 16 9 C -0.23 -1.33 11.12 -39.38 -0.44 -1.77 16 10 C -0.06 -0.33 12.30 29.74 0.37 0.04 16 11 O 0.10 0.96 11.20 17.18 0.19 1.15 16 12 N -0.34 -3.78 11.48 33.42 0.38 -3.40 16 13 C 0.14 1.48 2.20 -67.93 -0.15 1.33 16 14 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 15 C -0.16 -1.70 9.33 37.16 0.35 -1.36 16 16 N -0.73 -9.18 4.38 -53.81 -0.24 -9.41 16 17 C 0.54 9.51 7.81 -10.98 -0.09 9.43 16 18 O -0.52 -11.11 15.53 5.55 0.09 -11.02 16 19 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 21 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 22 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 25 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H 0.07 0.68 7.45 -51.93 -0.39 0.29 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.40 1.92 8.39 -40.82 -0.34 1.58 16 33 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.17 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.22 0.13 8.06 -52.49 -0.42 -0.29 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.51 7.44 -51.93 -0.39 0.12 16 40 H 0.40 4.07 8.39 -40.82 -0.34 3.73 16 41 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 386.70 15.07 5.83 5.83 Total: -1.00 -39.01 386.70 -6.53 -45.54 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.02 Total: 1.11 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -0.11 Total: -4.26 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.65 Total: -43.68 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.36 Total: -17.06 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.01 -6.53 -45.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701111747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.979 kcal (2) G-P(sol) polarization free energy of solvation -39.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds