Wall clock time and date at job start Tue Mar 31 2020 23:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46905 * 2 1 4 4 C 1.47197 * 109.47175 * 120.00552 * 2 1 3 5 5 N 2.60803 * 109.47186 * 120.00453 * 2 1 3 6 6 C 1.50706 * 109.46719 * 240.00391 * 2 1 3 7 7 O 1.21279 * 119.99778 * 239.99439 * 6 2 1 8 8 N 1.34772 * 119.99785 * 60.00291 * 6 2 1 9 9 C 1.47581 * 134.49263 * 179.97438 * 8 6 2 10 10 C 1.53945 * 86.11775 * 204.63554 * 9 8 6 11 11 C 1.53003 * 113.73776 * 221.93793 * 10 9 8 12 12 C 1.52999 * 109.46898 * 172.23201 * 11 10 9 13 13 O 1.42900 * 109.46996 * 179.76818 * 12 11 10 14 14 N 1.46498 * 113.74065 * 90.74243 * 10 9 8 15 15 C 1.34768 * 120.00568 * 67.08685 * 14 10 9 16 16 O 1.21280 * 120.00149 * 354.93969 * 15 14 10 17 17 C 1.50704 * 120.00285 * 174.93109 * 15 14 10 18 18 S 1.81000 * 109.47350 * 180.02562 * 17 15 14 19 19 C 1.76204 * 99.99861 * 180.02562 * 18 17 15 20 20 H 1.07993 * 119.99698 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99507 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00161 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99621 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46743 * 60.00457 * 23 21 19 25 25 H 1.48497 * 109.46994 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47274 * 300.00396 * 23 21 19 27 27 C 1.47928 * 134.50372 * 359.97438 * 8 6 2 28 28 H 1.08989 * 109.47241 * 59.99558 * 1 2 3 29 29 H 1.09000 * 109.46905 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46750 * 299.99430 * 1 2 3 31 31 H 1.09004 * 113.77159 * 90.33118 * 9 8 6 32 32 H 1.09003 * 113.76681 * 318.93799 * 9 8 6 33 33 H 1.09001 * 109.47186 * 292.22835 * 11 10 9 34 34 H 1.08996 * 109.47475 * 52.23209 * 11 10 9 35 35 H 1.09005 * 109.46832 * 299.77025 * 12 11 10 36 36 H 1.08999 * 109.47434 * 59.76696 * 12 11 10 37 37 H 0.96700 * 113.99900 * 179.97438 * 13 12 11 38 38 H 0.97003 * 119.99546 * 247.08813 * 14 10 9 39 39 H 1.09000 * 109.47166 * 300.00889 * 17 15 14 40 40 H 1.09000 * 109.46614 * 60.00118 * 17 15 14 41 41 H 0.97003 * 119.99329 * 179.97438 * 22 21 19 42 42 H 1.09000 * 113.86646 * 41.10781 * 27 8 6 43 43 H 1.08996 * 113.77309 * 269.61066 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6940 1.2018 5 7 2.3994 -1.2296 2.1293 6 6 2.0323 -0.7104 -1.2306 7 8 2.7296 -1.6964 -1.1194 8 7 1.7067 -0.2498 -2.4546 9 6 2.0091 -0.6767 -3.8345 10 6 1.7565 0.7890 -4.2319 11 6 0.9525 0.9470 -5.5241 12 6 0.5929 2.4206 -5.7240 13 8 -0.1533 2.5689 -6.9336 14 7 2.9598 1.6239 -4.2023 15 6 3.9544 1.4043 -5.0848 16 8 3.8950 0.4592 -5.8426 17 6 5.1404 2.3330 -5.1302 18 16 6.2937 1.7769 -6.4095 19 6 7.5464 3.0053 -6.2470 20 1 7.4422 3.7887 -5.5110 21 6 8.6671 2.9660 -7.0650 22 7 8.7938 2.0113 -7.9624 23 14 9.9950 4.2686 -6.8932 24 1 10.5531 4.2280 -5.5176 25 1 11.0773 4.0047 -7.8751 26 1 9.4098 5.6089 -7.1505 27 6 0.9026 0.8867 -2.9547 28 1 -0.3633 0.5138 -0.8898 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.2818 -1.3756 -4.2476 32 1 3.0403 -0.9994 -3.9785 33 1 1.5493 0.6009 -6.3679 34 1 0.0391 0.3558 -5.4583 35 1 -0.0073 2.7656 -4.8820 36 1 1.5062 3.0123 -5.7856 37 1 -0.4161 3.4798 -7.1244 38 1 3.0407 2.3350 -3.5474 39 1 4.8021 3.3433 -5.3606 40 1 5.6416 2.3297 -4.1623 41 1 9.5769 1.9842 -8.5342 42 1 1.0511 1.8113 -2.3969 43 1 -0.1491 0.6463 -3.1098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701259820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:40 Heat of formation + Delta-G solvation = -54.479752 kcal Electronic energy + Delta-G solvation = -27214.114736 eV Core-core repulsion = 23194.450829 eV Total energy + Delta-G solvation = -4019.663907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.43988 -39.58667 -38.09678 -37.02349 -36.73190 -34.22551 -33.52557 -32.46393 -31.78160 -29.15618 -28.20366 -26.86856 -25.70343 -25.50667 -23.46890 -21.58403 -20.35209 -19.45850 -18.20460 -17.94141 -17.79343 -17.49139 -16.64718 -16.17454 -16.11448 -15.62199 -15.29102 -14.96226 -14.83744 -14.75725 -14.37096 -14.00904 -13.78036 -13.62565 -13.39267 -13.36923 -13.15518 -12.91183 -12.69911 -12.64265 -12.47779 -12.31514 -12.08537 -11.93634 -11.89309 -11.66742 -11.09100 -11.06730 -10.94825 -10.80477 -10.21475 -10.17828 -9.87282 -9.56814 -9.32028 -9.09438 -8.96854 -8.29641 -6.54466 -6.25097 -3.96268 1.94144 2.11455 2.44932 2.63695 2.78468 2.91505 3.20918 3.22763 3.26787 3.34977 3.53208 3.65028 3.77850 3.98755 4.16764 4.27844 4.42444 4.54320 4.65613 4.81248 4.81840 4.90639 4.93249 5.01201 5.07123 5.10243 5.12812 5.23489 5.26765 5.40555 5.46167 5.57193 5.65602 5.71399 5.79125 6.02893 6.05475 6.42996 7.10840 7.23437 7.41765 7.47237 7.55666 7.65577 8.31042 8.43650 9.20217 10.82182 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010627 B = 0.002889 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.108823 B = 9689.534577 C =11498.912246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.006 4.006 3 H 0.140 0.860 4 C 0.219 3.781 5 N -0.409 5.409 6 C 0.546 3.454 7 O -0.521 6.521 8 N -0.638 5.638 9 C 0.112 3.888 10 C 0.151 3.849 11 C -0.121 4.121 12 C 0.081 3.919 13 O -0.573 6.573 14 N -0.720 5.720 15 C 0.537 3.463 16 O -0.504 6.504 17 C -0.154 4.154 18 S -0.056 6.056 19 C -0.538 4.538 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.097 3.903 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.050 0.950 37 H 0.380 0.620 38 H 0.401 0.599 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.093 0.907 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.079 4.363 11.326 26.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 H 0.157 0.843 4 C -0.100 4.100 5 N -0.083 5.083 6 C 0.332 3.668 7 O -0.396 6.396 8 N -0.374 5.374 9 C -0.010 4.010 10 C 0.062 3.938 11 C -0.161 4.161 12 C 0.003 3.997 13 O -0.378 6.378 14 N -0.376 5.376 15 C 0.324 3.676 16 O -0.377 6.377 17 C -0.304 4.304 18 S 0.171 5.829 19 C -0.686 4.686 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.026 4.026 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.226 0.774 38 H 0.236 0.764 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -22.935 0.616 11.553 25.688 hybrid contribution 0.843 3.163 1.033 3.432 sum -22.092 3.779 12.586 25.705 Atomic orbital electron populations 1.21825 0.89561 1.04394 1.04412 1.18752 0.98762 1.00181 0.85386 0.84292 1.28040 0.93930 0.94048 0.93977 1.81210 1.07395 1.07630 1.12111 1.19579 0.80582 0.84085 0.82525 1.90834 1.37434 1.25866 1.85448 1.49872 1.51605 1.31119 1.04838 1.23614 1.04336 0.95879 0.77195 1.21563 0.86182 0.92017 0.94005 1.21711 1.00147 0.96399 0.97798 1.22051 0.94654 0.96826 0.86132 1.86481 1.75474 1.33083 1.42789 1.45711 1.17430 1.36846 1.37594 1.20325 0.82646 0.85485 0.79157 1.90716 1.77767 1.29361 1.39845 1.23535 0.98384 1.01426 1.07101 1.85430 1.16980 1.39141 1.41365 1.22811 1.07037 1.14378 1.24381 0.90995 1.24987 0.97680 0.96377 0.94466 1.70001 1.28944 1.31375 1.19854 0.86231 0.80248 0.80896 0.78172 1.19930 1.20786 1.19937 1.23804 0.96698 0.90310 0.91768 0.89911 0.90975 0.90126 0.88344 0.88297 0.88500 0.89825 0.94002 0.93189 0.77364 0.76378 0.89167 0.89278 0.92069 0.88830 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.40 9.03 37.16 0.34 -0.07 16 2 C -0.01 -0.04 2.94 -94.55 -0.28 -0.32 16 3 H 0.14 0.36 8.14 -51.93 -0.42 -0.06 16 4 C 0.22 2.28 13.88 -20.76 -0.29 1.99 16 5 N -0.41 -5.54 18.54 42.16 0.78 -4.76 16 6 C 0.55 5.45 7.37 -10.98 -0.08 5.37 16 7 O -0.52 -8.20 16.76 5.56 0.09 -8.11 16 8 N -0.64 -5.00 3.57 -177.86 -0.64 -5.63 16 9 C 0.11 1.11 7.72 -2.97 -0.02 1.09 16 10 C 0.15 1.18 0.61 -134.03 -0.08 1.10 16 11 C -0.12 -1.04 4.86 -26.73 -0.13 -1.17 16 12 C 0.08 0.62 6.82 37.16 0.25 0.87 16 13 O -0.57 -5.24 13.66 -35.23 -0.48 -5.72 16 14 N -0.72 -7.05 4.57 -49.07 -0.22 -7.28 16 15 C 0.54 8.49 7.41 -10.99 -0.08 8.41 16 16 O -0.50 -9.90 13.85 5.56 0.08 -9.82 16 17 C -0.15 -2.81 6.16 36.01 0.22 -2.59 16 18 S -0.06 -1.45 20.57 -107.50 -2.21 -3.66 16 19 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 20 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 23 Si 0.92 21.04 29.55 -169.99 -5.02 16.01 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.10 0.36 5.97 -2.78 -0.02 0.34 16 28 H 0.08 0.05 6.14 -51.94 -0.32 -0.27 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.10 1.39 7.42 -51.93 -0.39 1.00 16 33 H 0.10 1.24 7.06 -51.93 -0.37 0.87 16 34 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 35 H 0.04 0.19 7.99 -51.93 -0.41 -0.23 16 36 H 0.05 0.44 7.68 -51.93 -0.40 0.04 16 37 H 0.38 1.81 9.12 45.56 0.42 2.22 16 38 H 0.40 2.70 8.66 -40.82 -0.35 2.35 16 39 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 40 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.09 0.08 8.09 -51.93 -0.42 -0.34 16 43 H 0.11 0.14 7.90 -51.93 -0.41 -0.27 16 LS Contribution 386.46 15.07 5.82 5.82 Total: -1.00 -40.76 386.46 -6.19 -46.95 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.15 Total: -1.22 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 0.03 Total: 2.43 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.66 Total: -42.68 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.31 Total: -23.65 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -40.76 -6.19 -46.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701259820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.533 kcal (2) G-P(sol) polarization free energy of solvation -40.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds