Wall clock time and date at job start Tue Mar 31 2020 23:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47249 * 2 1 4 4 C 1.47208 * 109.47006 * 240.00064 * 2 1 3 5 5 N 2.60808 * 109.47067 * 239.99971 * 2 1 3 6 6 C 1.50700 * 109.47434 * 120.00412 * 2 1 3 7 7 O 1.21276 * 120.00587 * 119.99723 * 6 2 1 8 8 N 1.34784 * 119.99768 * 299.99742 * 6 2 1 9 9 C 1.47578 * 134.49358 * 180.02562 * 8 6 2 10 10 C 1.53942 * 86.24183 * 155.42529 * 9 8 6 11 11 C 1.52998 * 113.74264 * 137.89432 * 10 9 8 12 12 C 1.53001 * 109.47058 * 65.22909 * 11 10 9 13 13 O 1.42898 * 109.47119 * 184.61699 * 12 11 10 14 14 N 1.46502 * 113.74002 * 269.20490 * 10 9 8 15 15 C 1.34780 * 119.99765 * 174.47676 * 14 10 9 16 16 O 1.21284 * 120.00008 * 354.96131 * 15 14 10 17 17 C 1.50702 * 119.99700 * 174.95882 * 15 14 10 18 18 S 1.80997 * 109.46918 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00032 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00112 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00158 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99985 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00089 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47313 * 89.99358 * 23 21 19 25 25 H 1.48496 * 109.47271 * 209.99660 * 23 21 19 26 26 H 1.48500 * 109.47169 * 329.99643 * 23 21 19 27 27 C 1.47807 * 134.58158 * 359.95032 * 8 6 2 28 28 H 1.08998 * 109.47431 * 59.99668 * 1 2 3 29 29 H 1.09003 * 109.47249 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46863 * 299.99799 * 1 2 3 31 31 H 1.08996 * 113.76779 * 41.06708 * 9 8 6 32 32 H 1.09001 * 113.76351 * 269.78027 * 9 8 6 33 33 H 1.09005 * 109.47336 * 185.22988 * 11 10 9 34 34 H 1.08998 * 109.47353 * 305.23054 * 11 10 9 35 35 H 1.08994 * 109.47349 * 304.61976 * 12 11 10 36 36 H 1.09008 * 109.46810 * 64.61964 * 12 11 10 37 37 H 0.96698 * 113.99992 * 179.97438 * 13 12 11 38 38 H 0.96992 * 120.00167 * 354.47772 * 14 10 9 39 39 H 1.09001 * 109.47432 * 300.00097 * 17 15 14 40 40 H 1.09004 * 109.47088 * 60.00114 * 17 15 14 41 41 H 0.97002 * 119.99574 * 179.97438 * 22 21 19 42 42 H 1.09001 * 113.66663 * 90.27100 * 27 8 6 43 43 H 1.09001 * 113.93988 * 318.92302 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 -1.2020 5 7 2.3993 -1.2295 -2.1295 6 6 2.0323 -0.7105 1.2304 7 8 2.7296 -1.6965 1.1191 8 7 1.7068 -0.2500 2.4546 9 6 2.0094 -0.6771 3.8344 10 6 1.7557 0.7874 4.2354 11 6 0.9485 0.9417 5.5259 12 6 1.7585 0.3941 6.7027 13 8 0.9642 0.4392 7.8898 14 7 2.9587 1.6230 4.2088 15 6 2.8630 2.9493 4.4290 16 8 1.7731 3.4654 4.5584 17 6 4.1102 3.7908 4.5145 18 16 3.6542 5.5163 4.8156 19 6 5.2548 6.2511 4.8681 20 1 6.1345 5.6397 4.7308 21 6 5.3852 7.6158 5.0850 22 7 6.5810 8.1646 5.1247 23 14 3.8638 8.6735 5.3219 24 1 3.5191 8.7287 6.7653 25 1 4.1330 10.0465 4.8244 26 1 2.7297 8.0860 4.5643 27 6 0.9049 0.8857 2.9564 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0405 -0.9997 3.9783 32 1 1.2831 -1.3776 4.2467 33 1 0.7306 1.9964 5.6943 34 1 0.0142 0.3872 5.4386 35 1 2.0465 -0.6368 6.4972 36 1 2.6536 1.0007 6.8412 37 1 1.4151 0.1060 8.6776 38 1 3.8241 1.2219 4.0326 39 1 4.7350 3.4325 5.3327 40 1 4.6622 3.7187 3.5773 41 1 6.6720 9.1185 5.2759 42 1 -0.1472 0.6448 3.1091 43 1 1.0529 1.8115 2.4005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701259825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:43 Heat of formation + Delta-G solvation = -55.034042 kcal Electronic energy + Delta-G solvation = -27277.332816 eV Core-core repulsion = 23257.644873 eV Total energy + Delta-G solvation = -4019.687943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.53027 -39.69602 -38.24882 -37.03083 -36.75225 -34.27785 -33.52738 -32.50083 -31.90834 -29.28889 -28.25676 -26.96495 -25.71007 -25.61713 -23.49827 -21.71991 -20.43630 -19.58052 -18.12988 -17.96923 -17.82347 -17.56826 -16.62065 -16.39183 -16.23852 -15.68434 -15.35869 -15.12866 -14.94384 -14.71528 -14.45353 -13.99404 -13.77963 -13.63272 -13.56790 -13.33618 -13.11794 -13.06303 -12.85544 -12.69682 -12.56878 -12.32883 -12.13645 -12.04973 -11.92859 -11.69629 -11.33464 -11.06973 -10.99208 -10.69880 -10.31697 -10.21581 -9.92275 -9.64455 -9.44325 -9.09842 -9.05396 -8.59553 -6.99952 -6.34876 -4.07762 1.89528 2.04945 2.44885 2.54972 2.61607 2.72030 3.09562 3.28010 3.37423 3.43876 3.51814 3.55182 3.79642 4.04257 4.26619 4.33807 4.38439 4.50479 4.58643 4.74627 4.81360 4.87004 4.97266 4.97750 5.01782 5.04216 5.09222 5.11405 5.16583 5.24525 5.27965 5.41102 5.48221 5.63391 5.67691 5.89611 6.04009 6.32550 7.04054 7.20714 7.35390 7.39420 7.55933 7.87935 8.25565 8.35722 9.10904 10.74368 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.003070 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.657033 B = 9118.565186 C =10892.933073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.008 4.008 3 H 0.142 0.858 4 C 0.222 3.778 5 N -0.410 5.410 6 C 0.551 3.449 7 O -0.528 6.528 8 N -0.639 5.639 9 C 0.110 3.890 10 C 0.151 3.849 11 C -0.125 4.125 12 C 0.080 3.920 13 O -0.573 6.573 14 N -0.718 5.718 15 C 0.537 3.463 16 O -0.507 6.507 17 C -0.126 4.126 18 S -0.137 6.137 19 C -0.524 4.524 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.096 3.904 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.048 0.952 37 H 0.380 0.620 38 H 0.405 0.595 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.104 0.896 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.563 -18.309 -1.226 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 H 0.160 0.840 4 C -0.098 4.098 5 N -0.085 5.085 6 C 0.338 3.662 7 O -0.404 6.404 8 N -0.374 5.374 9 C -0.012 4.012 10 C 0.063 3.937 11 C -0.164 4.164 12 C 0.002 3.998 13 O -0.378 6.378 14 N -0.373 5.373 15 C 0.323 3.677 16 O -0.381 6.381 17 C -0.277 4.277 18 S 0.089 5.911 19 C -0.671 4.671 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.027 4.027 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.227 0.773 38 H 0.240 0.760 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.122 0.878 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.678 -18.442 -3.082 23.770 hybrid contribution 1.739 -0.137 0.620 1.851 sum -12.939 -18.579 -2.462 22.774 Atomic orbital electron populations 1.21832 0.89421 1.04210 1.04796 1.18747 0.98948 1.00369 0.85151 0.84020 1.28041 0.93846 0.93916 0.93983 1.81199 1.07549 1.07887 1.11895 1.19589 0.80266 0.83775 0.82583 1.90802 1.37950 1.25992 1.85677 1.49833 1.52109 1.31258 1.04235 1.23569 1.03425 0.95322 0.78908 1.21570 0.87252 0.90354 0.94565 1.21751 0.98067 1.05863 0.90713 1.22065 0.93649 0.98772 0.85292 1.86466 1.44166 1.88222 1.18937 1.45717 1.09062 1.07456 1.75052 1.20307 0.91230 0.81154 0.74976 1.90686 1.28481 1.71633 1.47270 1.23295 0.97959 1.00574 1.05845 1.84769 1.14007 0.97480 1.94819 1.22302 0.90786 0.96706 1.57316 0.89401 1.24721 0.96315 0.96988 0.93282 1.69940 1.22024 1.12504 1.47095 0.86735 0.84141 0.80653 0.80298 1.19187 1.19934 1.15902 1.23885 0.96369 0.89916 0.92549 0.89992 0.91077 0.89734 0.89076 0.87745 0.87545 0.89774 0.93980 0.93346 0.77314 0.76007 0.88423 0.88443 0.91876 0.87835 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 9.03 37.15 0.34 -0.27 16 2 C -0.01 -0.05 2.94 -94.56 -0.28 -0.33 16 3 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 4 C 0.22 2.35 13.88 -20.76 -0.29 2.06 16 5 N -0.41 -5.57 18.54 42.15 0.78 -4.79 16 6 C 0.55 5.07 7.37 -10.98 -0.08 4.99 16 7 O -0.53 -7.21 16.76 5.56 0.09 -7.12 16 8 N -0.64 -4.45 3.58 -177.21 -0.63 -5.09 16 9 C 0.11 0.65 7.31 -2.98 -0.02 0.63 16 10 C 0.15 1.09 0.63 -133.70 -0.08 1.01 16 11 C -0.13 -1.05 4.85 -26.73 -0.13 -1.18 16 12 C 0.08 0.64 6.86 37.16 0.25 0.90 16 13 O -0.57 -5.31 13.66 -35.23 -0.48 -5.79 16 14 N -0.72 -6.52 5.14 -48.83 -0.25 -6.77 16 15 C 0.54 7.44 7.53 -10.98 -0.08 7.36 16 16 O -0.51 -8.51 13.86 5.55 0.08 -8.44 16 17 C -0.13 -2.11 6.16 36.01 0.22 -1.89 16 18 S -0.14 -3.18 18.55 -107.50 -1.99 -5.17 16 19 C -0.52 -14.36 10.04 30.94 0.31 -14.04 16 20 H 0.09 2.53 8.03 -52.48 -0.42 2.11 16 21 C 0.10 2.70 5.50 -17.43 -0.10 2.60 16 22 N -0.88 -25.82 13.97 55.49 0.78 -25.04 16 23 Si 0.86 20.87 27.74 -169.99 -4.72 16.16 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.24 -5.64 6.74 56.52 0.38 -5.26 16 27 C 0.10 0.58 6.15 -2.86 -0.02 0.57 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.24 6.14 -51.93 -0.32 -0.08 16 31 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.10 0.45 8.10 -51.93 -0.42 0.03 16 33 H 0.11 1.29 6.08 -51.93 -0.32 0.98 16 34 H 0.08 0.57 8.05 -51.93 -0.42 0.16 16 35 H 0.04 0.24 7.48 -51.93 -0.39 -0.15 16 36 H 0.05 0.44 8.09 -51.92 -0.42 0.02 16 37 H 0.38 1.90 9.12 45.56 0.42 2.31 16 38 H 0.40 2.98 8.63 -40.82 -0.35 2.63 16 39 H 0.10 1.54 8.14 -51.91 -0.42 1.12 16 40 H 0.10 1.53 8.14 -51.91 -0.42 1.11 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.10 0.41 7.86 -51.93 -0.41 0.00 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -37.89 383.81 -5.68 -43.57 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.16 Total: 0.29 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 0.04 Total: 2.40 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.67 Total: -41.69 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.31 Total: -21.34 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.72 Total: 16.16 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -1.99 Total: -5.17 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.89 -5.68 -43.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701259825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.462 kcal (2) G-P(sol) polarization free energy of solvation -37.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds