Wall clock time and date at job start Tue Mar 31 2020 23:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46842 * 2 1 4 4 C 1.34777 * 119.99707 * 276.61489 * 3 2 1 5 5 O 1.21495 * 120.00409 * 175.44499 * 4 3 2 6 6 C 1.48334 * 119.99946 * 355.44125 * 4 3 2 7 7 C 1.42276 * 126.93737 * 185.71279 * 6 4 3 8 8 C 1.35313 * 103.91785 * 179.91340 * 7 6 4 9 9 O 1.34008 * 106.67188 * 0.35054 * 8 7 6 10 10 N 1.20905 * 111.84716 * 359.76159 * 9 8 7 11 11 C 1.46493 * 120.00167 * 96.61379 * 3 2 1 12 12 H 1.09001 * 109.47402 * 179.97438 * 11 3 2 13 13 C 1.53004 * 109.47265 * 60.00206 * 11 3 2 14 14 C 1.52995 * 109.47546 * 299.99904 * 11 3 2 15 15 N 1.46496 * 109.46839 * 305.00078 * 14 11 3 16 16 C 1.34784 * 119.99964 * 180.02562 * 15 14 11 17 17 O 1.21285 * 120.00063 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00023 * 179.97438 * 16 15 14 19 19 S 1.81000 * 109.47047 * 179.97438 * 18 16 15 20 20 C 1.76197 * 100.00111 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99941 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00052 * 179.97438 * 20 19 18 23 23 N 1.31629 * 120.00342 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99935 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47081 * 90.00517 * 24 22 20 26 26 H 1.48504 * 109.46972 * 210.00180 * 24 22 20 27 27 H 1.48501 * 109.47306 * 330.00264 * 24 22 20 28 28 H 1.08998 * 109.47037 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47469 * 300.00328 * 1 2 3 30 30 H 1.08998 * 109.47119 * 60.00358 * 1 2 3 31 31 H 1.08993 * 109.46993 * 239.99817 * 2 1 3 32 32 H 1.09002 * 109.46863 * 119.99220 * 2 1 3 33 33 H 1.07995 * 128.03871 * 0.03495 * 7 6 4 34 34 H 1.08010 * 126.66285 * 180.08919 * 8 7 6 35 35 H 1.09003 * 109.47065 * 59.99316 * 13 11 3 36 36 H 1.08998 * 109.47483 * 179.97438 * 13 11 3 37 37 H 1.09001 * 109.46880 * 299.99949 * 13 11 3 38 38 H 1.08998 * 109.47388 * 64.99815 * 14 11 3 39 39 H 1.09002 * 109.47231 * 185.00146 * 14 11 3 40 40 H 0.96997 * 120.00386 * 359.97438 * 15 14 11 41 41 H 1.08998 * 109.46977 * 300.00071 * 18 16 15 42 42 H 1.09002 * 109.47033 * 60.00029 * 18 16 15 43 43 H 0.96998 * 120.00337 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1161 2.0614 -1.1595 5 8 2.4416 3.2319 -1.1516 6 6 1.8264 1.3808 -2.4452 7 6 1.9906 1.9174 -3.7526 8 6 1.5951 0.9131 -4.5687 9 8 1.2298 -0.1044 -3.7769 10 7 1.3622 0.1666 -2.6060 11 6 2.4002 2.0232 1.2602 12 1 2.7362 3.0410 1.0623 13 6 3.5342 1.2304 1.9133 14 6 1.1942 2.0576 2.2011 15 7 0.0693 2.7127 1.5292 16 6 -1.1070 2.8579 2.1710 17 8 -1.2344 2.4457 3.3045 18 6 -2.2641 3.5324 1.4801 19 16 -3.6908 3.5729 2.5931 20 6 -4.8613 4.3905 1.5605 21 1 -4.5810 4.6959 0.5632 22 6 -6.1438 4.6410 2.0284 23 7 -6.4855 4.2684 3.2437 24 14 -7.3849 5.5071 0.9334 25 1 -8.1375 4.4989 0.1447 26 1 -8.3304 6.2837 1.7749 27 1 -6.6733 6.4272 0.0102 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.3495 2.8976 -4.0294 34 1 1.5736 0.9299 -5.6484 35 1 4.3933 1.2058 1.2429 36 1 3.8187 1.7082 2.8507 37 1 3.1986 0.2123 2.1112 38 1 0.9138 1.0391 2.4697 39 1 1.4525 2.6131 3.1027 40 1 0.1712 3.0428 0.6228 41 1 -1.9832 4.5507 1.2115 42 1 -2.5227 2.9770 0.5785 43 1 -7.3817 4.4438 3.5708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001702024872.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:45 Heat of formation + Delta-G solvation = 6.574039 kcal Electronic energy + Delta-G solvation = -27794.385234 eV Core-core repulsion = 23777.368818 eV Total energy + Delta-G solvation = -4017.016416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.47191 -40.66609 -39.01931 -37.11297 -34.86435 -33.97401 -32.70968 -32.41375 -31.86637 -30.24592 -29.34570 -26.10722 -25.50085 -25.23920 -23.76500 -23.33170 -21.76731 -20.30137 -19.79950 -18.29954 -18.08649 -17.84593 -17.66451 -16.78417 -16.28773 -15.96095 -15.34739 -15.07306 -14.85022 -14.78988 -14.24923 -14.03782 -13.99358 -13.69095 -13.53006 -13.23366 -13.17950 -12.89853 -12.72155 -12.57856 -12.30165 -12.03018 -11.91571 -11.76272 -11.16222 -11.12760 -11.04935 -11.00975 -10.81968 -10.74806 -10.51093 -10.12174 -9.80469 -9.41653 -9.12240 -9.05668 -8.86858 -8.22401 -6.48266 -6.20303 -3.90580 0.74166 1.30221 2.31517 2.73185 2.78302 3.04840 3.11161 3.23379 3.28843 3.33527 3.48936 3.73479 4.09328 4.21913 4.42000 4.57481 4.66981 4.72095 4.81262 4.88319 4.98277 5.11289 5.14832 5.16253 5.23268 5.32979 5.33423 5.44391 5.50220 5.60804 5.68628 5.73034 5.76068 5.85130 5.91292 6.15391 6.17641 6.22555 6.60790 6.86529 7.50574 7.61154 7.69663 7.73169 8.36852 8.61725 9.25104 10.87157 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011969 B = 0.002973 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.903887 B = 9416.067571 C =10893.391139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 N -0.590 5.590 4 C 0.597 3.403 5 O -0.522 6.522 6 C -0.027 4.027 7 C -0.185 4.185 8 C -0.056 4.056 9 O 0.117 5.883 10 N -0.321 5.321 11 C 0.123 3.877 12 H 0.111 0.889 13 C -0.158 4.158 14 C 0.112 3.888 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.058 6.058 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.181 0.819 34 H 0.224 0.776 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.652 -9.732 -14.592 28.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.026 4.026 3 N -0.324 5.324 4 C 0.383 3.617 5 O -0.397 6.397 6 C -0.185 4.185 7 C -0.208 4.208 8 C -0.137 4.137 9 O 0.043 5.957 10 N -0.023 5.023 11 C 0.020 3.980 12 H 0.129 0.871 13 C -0.216 4.216 14 C -0.013 4.013 15 N -0.388 5.388 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.304 4.304 19 S 0.169 5.831 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.198 0.802 34 H 0.240 0.760 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 22.145 -10.740 -11.613 27.214 hybrid contribution -0.419 1.887 -2.964 3.539 sum 21.726 -8.854 -14.577 27.621 Atomic orbital electron populations 1.22244 0.94695 1.02794 1.03024 1.21927 0.95551 0.81172 1.03914 1.47964 1.63654 1.14913 1.05833 1.17002 0.77530 0.85470 0.81730 1.90822 1.47772 1.14781 1.86297 1.23508 1.05953 0.92382 0.96698 1.22781 1.05477 1.02597 0.89918 1.26056 1.01058 0.86887 0.99689 1.84833 1.61367 1.37915 1.11629 1.74383 1.15098 1.15851 0.96963 1.21500 0.94541 0.99281 0.82631 0.87111 1.22077 0.97418 1.00788 1.01361 1.21663 0.85426 0.98937 0.95249 1.45967 1.11879 1.62328 1.18665 1.20278 0.82846 0.78614 0.86353 1.90701 1.82507 1.48078 1.17909 1.23528 0.99457 1.02683 1.04720 1.85345 1.01198 1.77533 1.19060 1.22873 0.98765 1.44169 1.02563 0.90987 1.24981 0.97527 0.95543 0.95476 1.70016 1.20101 1.44389 1.15819 0.86174 0.80217 0.79326 0.79834 1.20270 1.20723 1.19688 0.91344 0.91250 0.92712 0.88559 0.89920 0.80186 0.75968 0.91689 0.90437 0.91655 0.91016 0.90206 0.76866 0.89298 0.89498 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.47 37.16 0.35 -1.51 16 2 C 0.10 0.88 4.96 -4.04 -0.02 0.86 16 3 N -0.59 -5.90 1.87 -167.04 -0.31 -6.21 16 4 C 0.60 6.93 7.35 -12.11 -0.09 6.84 16 5 O -0.52 -7.31 16.29 5.37 0.09 -7.22 16 6 C -0.03 -0.27 6.70 -82.52 -0.55 -0.82 16 7 C -0.19 -1.39 11.00 -39.07 -0.43 -1.82 16 8 C -0.06 -0.28 12.28 29.69 0.36 0.08 16 9 O 0.12 0.88 11.18 17.27 0.19 1.07 16 10 N -0.32 -3.03 7.57 33.29 0.25 -2.78 16 11 C 0.12 1.17 2.79 -67.94 -0.19 0.98 16 12 H 0.11 1.17 6.91 -51.93 -0.36 0.81 16 13 C -0.16 -1.09 9.18 37.16 0.34 -0.75 16 14 C 0.11 1.32 4.35 -4.05 -0.02 1.30 16 15 N -0.73 -10.66 4.00 -60.30 -0.24 -10.90 16 16 C 0.53 10.29 7.63 -10.98 -0.08 10.21 16 17 O -0.52 -11.83 15.86 5.55 0.09 -11.74 16 18 C -0.15 -3.25 6.16 36.01 0.22 -3.03 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.57 9.50 30.94 0.29 -15.28 16 21 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 22 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 24 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.91 5.09 -51.93 -0.26 0.65 16 30 H 0.05 0.66 7.13 -51.93 -0.37 0.29 16 31 H 0.10 0.86 5.36 -51.93 -0.28 0.59 16 32 H 0.08 0.63 6.45 -51.93 -0.33 0.29 16 33 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.22 0.07 8.06 -52.48 -0.42 -0.35 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.41 6.67 -51.93 -0.35 0.07 16 38 H 0.07 0.86 7.12 -51.93 -0.37 0.49 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.40 5.49 7.87 -40.82 -0.32 5.17 16 41 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 42 H 0.09 1.74 8.14 -51.91 -0.42 1.31 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -36.53 371.95 -6.30 -42.84 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.57 Total: 3.06 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 0.10 Total: -0.89 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.43 Total: -45.61 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.37 Total: -17.89 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.53 -6.30 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702024872.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.411 kcal (2) G-P(sol) polarization free energy of solvation -36.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds