Wall clock time and date at job start Tue Mar 31 2020 23:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21281 * 120.00579 * 2 1 4 4 N 1.34782 * 119.99950 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00345 * 179.97438 * 4 2 1 6 6 H 1.09001 * 110.88110 * 31.19175 * 5 4 2 7 7 C 1.54623 * 110.97225 * 267.37900 * 5 4 2 8 8 C 1.51286 * 104.25868 * 266.46195 * 7 5 4 9 9 O 1.21281 * 124.94555 * 164.00940 * 8 7 5 10 10 N 1.34421 * 110.10997 * 344.14203 * 8 7 5 11 11 C 1.46502 * 124.34677 * 179.43605 * 10 8 7 12 12 C 1.53500 * 114.20455 * 59.70321 * 11 10 8 13 13 N 1.47065 * 87.98238 * 220.34668 * 12 11 10 14 14 C 1.34780 * 136.05284 * 207.09062 * 13 12 11 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47156 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99640 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47282 * 59.99711 * 22 20 18 24 24 H 1.48497 * 109.47200 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47280 * 300.00084 * 22 20 18 26 26 C 1.47055 * 87.88872 * 27.34259 * 13 12 11 27 27 C 1.46761 * 111.30099 * 359.17175 * 10 8 7 28 28 H 1.08997 * 109.47216 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47084 * 300.00176 * 1 2 3 30 30 H 1.08998 * 109.46737 * 59.99808 * 1 2 3 31 31 H 0.96996 * 119.99803 * 0.02562 * 4 2 1 32 32 H 1.09004 * 110.48269 * 25.35940 * 7 5 4 33 33 H 1.09007 * 110.48607 * 147.86431 * 7 5 4 34 34 H 1.08994 * 113.27994 * 192.77067 * 11 10 8 35 35 H 1.08997 * 113.46629 * 105.56564 * 12 11 10 36 36 H 1.09005 * 113.52074 * 335.13079 * 12 11 10 37 37 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 38 38 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 39 39 H 0.97010 * 119.99946 * 180.02562 * 21 20 18 40 40 H 1.09004 * 113.47070 * 87.43729 * 26 13 12 41 41 H 1.09003 * 113.47263 * 217.87896 * 26 13 12 42 42 H 1.08998 * 110.23980 * 136.27882 * 27 10 8 43 43 H 1.08994 * 110.24699 * 258.18842 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6459 -1.1674 -0.0011 6 1 4.0346 -0.2963 0.5264 7 6 4.1987 -1.2331 -1.4436 8 6 4.4164 -2.7094 -1.6923 9 8 4.5787 -3.2136 -2.7834 10 7 4.4008 -3.3814 -0.5282 11 6 4.5699 -4.8317 -0.4088 12 6 5.9037 -5.3571 -0.9576 13 7 5.1646 -6.4998 -1.5151 14 6 5.4493 -7.7788 -1.8308 15 8 6.5682 -8.2123 -1.6550 16 6 4.3771 -8.6704 -2.4024 17 16 5.0651 -10.3141 -2.7200 18 6 3.6391 -11.1234 -3.3648 19 1 2.7073 -10.5848 -3.4558 20 6 3.7127 -12.4535 -3.7549 21 7 4.8481 -13.1100 -3.6435 22 14 2.2007 -13.3117 -4.4378 23 1 1.7395 -12.6045 -5.6595 24 1 2.5399 -14.7170 -4.7770 25 1 1.1201 -13.2959 -3.4193 26 6 3.9800 -5.6311 -1.5822 27 6 4.1989 -2.4748 0.6081 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6959 -2.0072 -0.0013 32 1 3.4734 -0.8274 -2.1489 33 1 5.1427 -0.6927 -1.5154 34 1 4.3101 -5.2159 0.5776 35 1 6.6133 -5.6372 -0.1791 36 1 6.3451 -4.7130 -1.7182 37 1 3.5548 -8.7514 -1.6915 38 1 4.0096 -8.2442 -3.3359 39 1 4.8998 -14.0394 -3.9165 40 1 3.9133 -5.0586 -2.5074 41 1 3.0505 -6.1445 -1.3358 42 1 3.4780 -2.9001 1.3063 43 1 5.1462 -2.2862 1.1131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001702885148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:55 Heat of formation + Delta-G solvation = -82.691358 kcal Electronic energy + Delta-G solvation = -26663.716782 eV Core-core repulsion = 22642.829528 eV Total energy + Delta-G solvation = -4020.887254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.35378 -41.00729 -40.17056 -38.72746 -37.70963 -35.06046 -34.61123 -32.78569 -31.54532 -30.16668 -28.86786 -28.11328 -27.66033 -27.03202 -23.95547 -22.96838 -21.64785 -20.72211 -20.05707 -19.57386 -18.33112 -18.10226 -17.85756 -17.80619 -17.09844 -16.89691 -16.45760 -16.38879 -16.13109 -15.93468 -15.66765 -15.38429 -14.76480 -14.57643 -14.52829 -14.32370 -14.08738 -13.88826 -13.75798 -13.56997 -13.39817 -13.21112 -13.18373 -12.93061 -12.87918 -12.76114 -12.64938 -12.52071 -12.13400 -11.78321 -11.15055 -11.11846 -10.95817 -10.94062 -10.34266 -10.18421 -9.81441 -9.79123 -8.72014 -8.36614 -6.16372 1.11172 1.38024 1.41741 1.43177 1.44446 1.51562 1.64449 1.69656 2.17740 2.24042 2.25243 2.97296 3.10587 3.17627 3.31150 3.41052 3.58679 3.76929 3.88430 4.00084 4.01233 4.19636 4.23151 4.35696 4.42280 4.49359 4.51341 4.53007 4.59554 4.65889 4.71377 4.73211 4.79819 4.82434 4.88433 5.16739 5.38852 5.44824 5.53152 5.99637 6.17260 6.49633 6.55509 6.99434 7.03881 7.05573 7.26527 8.72516 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.002047 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.941616 B =13676.923581 C =14685.669207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.511 3.489 3 O -0.593 6.593 4 N -0.713 5.713 5 C 0.137 3.863 6 H 0.124 0.876 7 C -0.161 4.161 8 C 0.512 3.488 9 O -0.566 6.566 10 N -0.601 5.601 11 C 0.151 3.849 12 C 0.086 3.914 13 N -0.646 5.646 14 C 0.564 3.436 15 O -0.565 6.565 16 C -0.117 4.117 17 S -0.148 6.148 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.001 2.999 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.259 1.259 26 C 0.076 3.924 27 C 0.100 3.900 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.417 0.583 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.170 0.830 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.272 0.728 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.245 29.546 14.027 34.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.301 3.699 3 O -0.474 6.474 4 N -0.366 5.366 5 C 0.031 3.969 6 H 0.142 0.858 7 C -0.203 4.203 8 C 0.302 3.698 9 O -0.445 6.445 10 N -0.334 5.334 11 C 0.046 3.954 12 C -0.038 4.038 13 N -0.383 5.383 14 C 0.353 3.647 15 O -0.444 6.444 16 C -0.268 4.268 17 S 0.079 5.921 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.822 3.178 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.183 1.183 26 C -0.047 4.047 27 C -0.022 4.022 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.254 0.746 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.187 0.813 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.138 0.862 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.946 28.931 13.679 33.229 hybrid contribution -1.574 -0.675 -1.196 2.089 sum -10.520 28.257 12.482 32.633 Atomic orbital electron populations 1.21893 0.88918 1.06235 1.05774 1.21435 0.91957 0.82850 0.73689 1.90731 1.71859 1.33112 1.51697 1.46132 1.06350 1.09434 1.74716 1.21825 0.80989 0.99835 0.94238 0.85799 1.22809 1.05213 0.92539 0.99690 1.21387 0.74560 0.90473 0.83380 1.90729 1.51101 1.75017 1.27698 1.48188 1.71143 1.05844 1.08262 1.22813 0.93664 0.78278 1.00597 1.23537 0.97772 0.84889 0.97556 1.49224 1.17208 1.07701 1.64119 1.19610 0.88139 0.80596 0.76323 1.90690 1.24624 1.74326 1.54737 1.23247 1.00768 0.98501 1.04286 1.85578 1.19670 1.03604 1.83237 1.23147 0.97251 0.99745 1.49395 0.89918 1.26173 1.00732 0.97043 0.95254 1.70179 1.27528 1.11099 1.45879 0.84967 0.77053 0.76829 0.78911 1.18823 1.20275 1.18328 1.23858 0.90355 0.89700 1.00792 1.22721 1.04310 0.87266 0.87880 0.87920 0.87930 0.88644 0.74582 0.88629 0.85659 0.81277 0.89457 0.91060 0.86920 0.88367 0.91898 0.88569 0.87928 0.86165 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.43 10.39 71.24 0.74 0.31 16 2 C 0.51 4.67 7.94 87.66 0.70 5.37 16 3 O -0.59 -11.28 16.74 -3.03 -0.05 -11.33 16 4 N -0.71 -2.82 5.12 -437.54 -2.24 -5.06 16 5 C 0.14 0.61 3.53 46.05 0.16 0.77 16 6 H 0.12 0.64 7.54 -2.39 -0.02 0.62 16 7 C -0.16 -1.57 6.58 30.59 0.20 -1.37 16 8 C 0.51 7.97 7.49 87.90 0.66 8.63 16 9 O -0.57 -14.92 14.46 -3.03 -0.04 -14.96 16 10 N -0.60 -5.41 3.18 -792.86 -2.52 -7.93 16 11 C 0.15 1.90 5.03 45.55 0.23 2.13 16 12 C 0.09 1.93 8.17 83.18 0.68 2.61 16 13 N -0.65 -19.17 3.69 -857.88 -3.16 -22.33 16 14 C 0.56 23.13 8.10 87.66 0.71 23.84 16 15 O -0.57 -28.42 16.64 -3.03 -0.05 -28.47 16 16 C -0.12 -4.99 5.98 71.24 0.43 -4.56 16 17 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 18 C -0.55 -31.81 9.50 67.96 0.65 -31.17 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.74 5.49 84.86 0.47 1.20 16 21 N -0.91 -56.51 13.22 21.65 0.29 -56.22 16 22 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 26 C 0.08 1.54 7.83 83.27 0.65 2.20 16 27 C 0.10 0.08 6.97 86.83 0.61 0.69 16 28 H 0.10 -0.26 7.91 -2.39 -0.02 -0.28 16 29 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.42 -0.26 8.50 -92.71 -0.79 -1.05 16 32 H 0.10 1.20 8.09 -2.39 -0.02 1.18 16 33 H 0.13 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.17 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.84 7.35 -2.38 -0.02 1.82 16 37 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 38 H 0.10 3.99 8.14 -2.40 -0.02 3.97 16 39 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 40 H 0.10 2.41 5.41 -2.38 -0.01 2.40 16 41 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.12 -0.48 8.08 -2.39 -0.02 -0.50 16 43 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: -1.00 -93.70 379.78 0.22 -93.49 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.26 Total: 6.00 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.87 Total: 10.63 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -7.63 Total: -91.54 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -0.15 Total: -54.76 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -93.70 0.22 -93.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702885148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.794 kcal (2) G-P(sol) polarization free energy of solvation -93.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds