Wall clock time and date at job start Tue Mar 31 2020 23:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21279 * 119.99919 * 2 1 4 4 N 1.34779 * 119.99985 * 179.97438 * 2 1 3 5 5 C 1.46494 * 119.99991 * 180.02562 * 4 2 1 6 6 C 1.50707 * 109.47025 * 180.02562 * 5 4 2 7 7 O 1.21276 * 119.99947 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99601 * 179.97438 * 6 5 4 9 9 C 1.48148 * 127.84381 * 0.02602 * 8 6 5 10 10 C 1.54388 * 104.61931 * 140.39091 * 9 8 6 11 11 H 1.08996 * 118.18182 * 244.20386 * 10 9 8 12 12 C 1.54290 * 104.95947 * 23.86822 * 10 9 8 13 13 H 1.08994 * 121.81636 * 222.17581 * 12 10 9 14 14 C 1.48153 * 127.83482 * 180.02562 * 8 6 5 15 15 C 1.53002 * 59.72302 * 114.13755 * 12 10 9 16 16 H 1.09003 * 117.44553 * 252.35491 * 15 12 10 17 17 N 1.46496 * 117.40882 * 107.66397 * 15 12 10 18 18 C 1.34775 * 120.00379 * 135.77541 * 17 15 12 19 19 O 1.21278 * 119.99604 * 359.97438 * 18 17 15 20 20 C 1.50700 * 120.00125 * 180.02562 * 18 17 15 21 21 S 1.80996 * 109.46909 * 179.97438 * 20 18 17 22 22 C 1.76209 * 99.99902 * 180.02562 * 21 20 18 23 23 H 1.07998 * 119.99704 * 0.02562 * 22 21 20 24 24 C 1.38790 * 119.99854 * 179.97438 * 22 21 20 25 25 N 1.31639 * 119.99972 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00453 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47237 * 89.99511 * 26 24 22 28 28 H 1.48496 * 109.47296 * 209.99990 * 26 24 22 29 29 H 1.48502 * 109.46763 * 329.99917 * 26 24 22 30 30 H 1.08999 * 109.47257 * 270.00894 * 1 2 3 31 31 H 1.08996 * 109.46935 * 30.00624 * 1 2 3 32 32 H 1.08998 * 109.46989 * 150.00839 * 1 2 3 33 33 H 0.97000 * 119.99549 * 0.02562 * 4 2 1 34 34 H 1.08999 * 109.47485 * 60.00000 * 5 4 2 35 35 H 1.09000 * 109.47238 * 299.99862 * 5 4 2 36 36 H 1.09002 * 110.40145 * 21.60683 * 9 8 6 37 37 H 1.09000 * 110.40558 * 259.17868 * 9 8 6 38 38 H 1.08998 * 110.40523 * 100.82138 * 14 8 6 39 39 H 1.09005 * 110.50244 * 338.43999 * 14 8 6 40 40 H 0.97010 * 119.99882 * 315.77551 * 17 15 12 41 41 H 1.09001 * 109.47141 * 300.00019 * 20 18 17 42 42 H 1.09001 * 109.47148 * 59.99615 * 20 18 17 43 43 H 0.96997 * 120.00099 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1482 -2.5881 0.0010 7 8 3.3601 -3.5099 0.0000 8 7 5.4733 -2.8343 0.0009 9 6 6.5806 -1.8501 0.0015 10 6 7.6364 -2.4520 0.9536 11 1 7.8704 -1.9113 1.8706 12 6 7.3544 -3.9689 0.9532 13 1 7.3784 -4.5581 1.8699 14 6 6.1530 -4.1507 0.0003 15 6 8.6612 -3.4270 0.3703 16 1 8.7745 -3.4477 -0.7136 17 7 9.8880 -3.6561 1.1375 18 6 11.0093 -4.0627 0.5100 19 8 11.0025 -4.2393 -0.6898 20 6 12.2711 -4.2988 1.2994 21 16 13.5905 -4.8341 0.1819 22 6 14.9072 -5.0323 1.3359 23 1 14.7415 -4.8312 2.3840 24 6 16.1569 -5.4480 0.8981 25 7 17.1405 -5.5966 1.7603 26 14 16.4434 -5.7967 -0.9145 27 1 16.8938 -4.5547 -1.5924 28 1 17.4852 -6.8450 -1.0584 29 1 15.1785 -6.2677 -1.5338 30 1 -0.3634 0.0002 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8901 -0.5137 33 1 1.6959 -2.0072 0.0005 34 1 4.0090 -0.6532 0.8911 35 1 4.0096 -0.6536 -0.8889 36 1 6.2336 -0.8879 0.3782 37 1 6.9921 -1.7405 -1.0019 38 1 6.4978 -4.3999 -1.0033 39 1 5.4844 -4.9258 0.3750 40 1 9.8933 -3.5151 2.0973 41 1 12.5675 -3.3748 1.7958 42 1 12.0927 -5.0717 2.0470 43 1 18.0140 -5.8868 1.4543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703976128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:47 Heat of formation + Delta-G solvation = -66.376648 kcal Electronic energy + Delta-G solvation = -25601.606032 eV Core-core repulsion = 21581.426236 eV Total energy + Delta-G solvation = -4020.179795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18152 -40.18340 -39.37394 -38.49539 -35.08411 -34.94248 -32.74847 -32.48347 -31.04408 -29.49623 -29.19963 -27.77978 -25.71323 -25.41006 -21.93675 -21.17404 -20.84616 -20.70883 -20.08258 -18.11102 -17.96675 -17.26264 -16.95824 -16.75841 -16.49696 -16.36348 -15.56060 -15.33173 -15.14723 -15.03431 -14.45662 -14.22497 -14.06069 -13.73214 -13.67802 -13.36796 -13.14736 -13.08276 -12.99533 -12.87441 -12.83901 -12.51324 -12.38445 -12.04712 -11.32115 -11.21356 -11.04914 -10.82359 -10.69225 -10.49360 -10.31870 -9.91470 -9.74986 -9.72494 -9.35155 -9.06007 -8.98103 -8.57634 -6.98502 -6.33588 -4.06428 1.92890 2.06892 2.12393 2.56159 2.61870 2.81275 3.09916 3.20940 3.29466 3.46211 3.52456 3.82520 4.12758 4.20727 4.28512 4.30221 4.34463 4.53322 4.61022 4.65506 4.70616 4.72905 4.80410 4.89479 4.90932 5.03545 5.05546 5.08979 5.30339 5.31913 5.39599 5.48051 5.58609 5.65488 5.66498 5.74905 5.91238 6.31419 6.87011 6.94917 7.37417 7.43848 7.66951 7.89248 8.28125 8.36661 9.12325 10.75573 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.040718 B = 0.001537 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.493680 B =18216.984128 C =18327.232164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.548 6.548 4 N -0.721 5.721 5 C 0.103 3.897 6 C 0.533 3.467 7 O -0.538 6.538 8 N -0.619 5.619 9 C 0.127 3.873 10 C -0.188 4.188 11 H 0.127 0.873 12 C -0.188 4.188 13 H 0.126 0.874 14 C 0.135 3.865 15 C 0.137 3.863 16 H 0.141 0.859 17 N -0.708 5.708 18 C 0.538 3.462 19 O -0.512 6.512 20 C -0.125 4.125 21 S -0.139 6.139 22 C -0.523 4.523 23 H 0.089 0.911 24 C 0.097 3.903 25 N -0.879 5.879 26 Si 0.857 3.143 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.413 0.587 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.403 0.597 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.134 8.863 -0.747 32.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.301 3.699 3 O -0.425 6.425 4 N -0.378 5.378 5 C -0.025 4.025 6 C 0.322 3.678 7 O -0.415 6.415 8 N -0.353 5.353 9 C 0.004 3.996 10 C -0.209 4.209 11 H 0.145 0.855 12 C -0.209 4.209 13 H 0.144 0.856 14 C 0.013 3.987 15 C 0.029 3.971 16 H 0.158 0.842 17 N -0.360 5.360 18 C 0.324 3.676 19 O -0.386 6.386 20 C -0.275 4.275 21 S 0.087 5.913 22 C -0.671 4.671 23 H 0.107 0.893 24 C -0.112 4.112 25 N -0.516 5.516 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.159 1.159 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.251 0.749 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.238 0.762 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -31.034 8.787 -2.727 32.369 hybrid contribution 0.341 -0.313 1.510 1.580 sum -30.693 8.474 -1.216 31.864 Atomic orbital electron populations 1.21869 0.90923 1.05184 1.05085 1.20877 0.90862 0.82921 0.75263 1.90747 1.70803 1.31374 1.49561 1.45858 1.05820 1.10137 1.75945 1.21028 0.82558 0.93829 1.05046 1.20076 0.80623 0.91153 0.75953 1.90719 1.54021 1.46153 1.50583 1.49163 1.04500 1.09023 1.72597 1.21921 0.85538 0.92239 0.99903 1.24147 1.01140 0.92680 1.02917 0.85465 1.24265 0.96541 0.96966 1.03153 0.85625 1.21761 0.92007 0.85478 0.99418 1.21554 0.80171 0.98052 0.97357 0.84175 1.45336 1.09059 1.70359 1.11200 1.20348 0.83797 0.75216 0.88213 1.90709 1.84220 1.49042 1.14608 1.23281 0.95627 1.05594 1.03026 1.84814 1.04758 1.87861 1.13847 1.22302 0.95657 1.53270 0.95862 0.89343 1.24707 0.94714 0.93486 0.98315 1.69937 1.02314 1.44758 1.34551 0.86739 0.80648 0.79461 0.85026 1.19170 1.19881 1.15932 0.88577 0.88580 0.89908 0.74899 0.88205 0.88136 0.89054 0.89512 0.89916 0.88959 0.76197 0.88240 0.88224 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 10.30 36.01 0.37 -0.24 16 2 C 0.51 3.83 7.94 -10.98 -0.09 3.75 16 3 O -0.55 -6.35 17.10 5.56 0.10 -6.25 16 4 N -0.72 -4.78 5.53 -61.47 -0.34 -5.12 16 5 C 0.10 0.67 5.13 -5.19 -0.03 0.65 16 6 C 0.53 4.37 7.98 -10.98 -0.09 4.29 16 7 O -0.54 -5.98 15.94 5.56 0.09 -5.89 16 8 N -0.62 -4.44 3.32 -169.28 -0.56 -5.00 16 9 C 0.13 0.68 6.72 -2.41 -0.02 0.67 16 10 C -0.19 -1.18 7.06 -89.21 -0.63 -1.81 16 11 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 12 C -0.19 -1.37 7.06 -89.20 -0.63 -2.00 16 13 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 14 C 0.14 1.02 6.85 -2.39 -0.02 1.01 16 15 C 0.14 1.23 5.98 -67.93 -0.41 0.82 16 16 H 0.14 1.47 7.40 -51.93 -0.38 1.09 16 17 N -0.71 -7.56 5.56 -53.80 -0.30 -7.86 16 18 C 0.54 8.55 7.85 -10.99 -0.09 8.46 16 19 O -0.51 -10.09 15.43 5.56 0.09 -10.01 16 20 C -0.12 -2.22 6.16 36.01 0.22 -2.00 16 21 S -0.14 -3.38 18.55 -107.50 -1.99 -5.37 16 22 C -0.52 -14.66 10.04 30.94 0.31 -14.35 16 23 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 24 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 25 N -0.88 -26.04 13.97 55.49 0.78 -25.27 16 26 Si 0.86 21.28 27.74 -169.99 -4.72 16.56 16 27 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 30 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.41 2.42 7.44 -40.82 -0.30 2.11 16 34 H 0.10 0.60 7.95 -51.93 -0.41 0.18 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.34 7.30 -51.93 -0.38 -0.04 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.76 7.88 -51.93 -0.41 0.35 16 40 H 0.40 3.18 8.83 -40.82 -0.36 2.82 16 41 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 42 H 0.10 1.64 8.14 -51.91 -0.42 1.22 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -37.18 383.20 -8.32 -45.50 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.05 Total: 1.01 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.18 Total: 1.92 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.43 Total: -43.25 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.27 Total: -22.15 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.72 Total: 16.56 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.37 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.18 -8.32 -45.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703976128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.875 kcal (2) G-P(sol) polarization free energy of solvation -37.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds