Wall clock time and date at job start Tue Mar 31 2020 23:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46882 * 2 1 4 4 C 1.46497 * 119.99697 * 92.15892 * 3 2 1 5 5 C 1.53005 * 109.47198 * 90.00299 * 4 3 2 6 6 N 1.46495 * 109.47042 * 179.97438 * 5 4 3 7 7 C 1.34785 * 119.99829 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99383 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00026 * 180.02562 * 7 6 5 10 10 S 1.80999 * 109.46886 * 180.02562 * 9 7 6 11 11 C 1.76204 * 99.99664 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00157 * 359.97438 * 11 10 9 13 13 C 1.38802 * 119.99948 * 180.02562 * 11 10 9 14 14 N 1.31635 * 119.99741 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00135 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47470 * 59.99287 * 15 13 11 17 17 H 1.48499 * 109.47243 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47130 * 299.99202 * 15 13 11 19 19 C 1.34774 * 119.99969 * 272.15925 * 3 2 1 20 20 O 1.21686 * 120.00059 * 185.32881 * 19 3 2 21 21 C 1.46722 * 119.99880 * 5.32351 * 19 3 2 22 22 O 1.35347 * 126.64555 * 6.17705 * 21 19 3 23 23 C 1.33660 * 107.68483 * 179.97438 * 22 21 19 24 24 N 1.30618 * 109.15402 * 359.97438 * 23 22 21 25 25 C 1.33690 * 108.99899 * 359.76338 * 24 23 22 26 26 C 1.50696 * 126.27739 * 180.25359 * 25 24 23 27 27 H 1.08996 * 109.47014 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47111 * 300.00248 * 1 2 3 29 29 H 1.09002 * 109.47047 * 60.00235 * 1 2 3 30 30 H 1.08993 * 109.47365 * 239.99861 * 2 1 3 31 31 H 1.09001 * 109.46527 * 119.99708 * 2 1 3 32 32 H 1.09008 * 109.47064 * 209.99575 * 4 3 2 33 33 H 1.08992 * 109.47971 * 329.99777 * 4 3 2 34 34 H 1.09000 * 109.46426 * 299.99896 * 5 4 3 35 35 H 1.09006 * 109.47056 * 59.99104 * 5 4 3 36 36 H 0.96998 * 120.00413 * 359.97438 * 6 5 4 37 37 H 1.09003 * 109.46857 * 299.99832 * 9 7 6 38 38 H 1.08998 * 109.47050 * 59.99761 * 9 7 6 39 39 H 0.96999 * 119.99863 * 180.02562 * 14 13 11 40 40 H 1.07996 * 125.42494 * 179.97438 * 23 22 21 41 41 H 1.08991 * 109.47671 * 270.14349 * 26 25 24 42 42 H 1.09005 * 109.46895 * 30.14831 * 26 25 24 43 43 H 1.09000 * 109.46996 * 150.14203 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3075 2.0559 1.2678 5 6 3.7673 1.8104 1.6549 6 7 4.0566 2.4855 2.9224 7 6 5.2893 2.4068 3.4618 8 8 6.1590 1.7774 2.8975 9 6 5.5868 3.1008 4.7660 10 16 7.3137 2.8104 5.2237 11 6 7.3838 3.7080 6.7383 12 1 6.5058 4.2198 7.1039 13 6 8.5677 3.7582 7.4611 14 7 9.6379 3.1348 7.0153 15 14 8.6419 4.7091 9.0672 16 1 7.6604 4.1400 10.0253 17 1 10.0082 4.6076 9.6400 18 1 8.3159 6.1355 8.8134 19 6 2.2015 2.0313 -1.1664 20 8 2.6979 3.1423 -1.1723 21 6 1.8024 1.3992 -2.4289 22 8 1.1375 0.2291 -2.5717 23 6 0.9712 0.0136 -3.8803 24 7 1.5048 1.0011 -4.5484 25 6 2.0238 1.8803 -3.6853 26 6 2.7276 3.1656 -4.0368 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1363 3.1267 1.1570 33 1 1.6541 1.6622 2.0463 34 1 3.9385 0.7396 1.7657 35 1 4.4208 2.2041 0.8763 36 1 3.3611 2.9892 3.3735 37 1 5.4158 4.1716 4.6550 38 1 4.9331 2.7072 5.5443 39 1 10.4652 3.1696 7.5205 40 1 0.4748 -0.8409 -4.3160 41 1 3.7943 2.9753 -4.1545 42 1 2.3233 3.5579 -4.9700 43 1 2.5742 3.8935 -3.2400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704263260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:59 Heat of formation + Delta-G solvation = -43.806321 kcal Electronic energy + Delta-G solvation = -26497.845124 eV Core-core repulsion = 22478.644052 eV Total energy + Delta-G solvation = -4019.201072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.94514 -40.33153 -39.07928 -37.01478 -35.62748 -34.67403 -32.42279 -32.21740 -31.45804 -30.08976 -28.78420 -27.46154 -25.48770 -24.58470 -23.91360 -23.15038 -21.84928 -20.57328 -20.03322 -18.11402 -17.83572 -17.39911 -17.19239 -16.84983 -16.28202 -15.89660 -15.48256 -15.13868 -14.98498 -14.79735 -14.64997 -14.24688 -14.00355 -13.84146 -13.65969 -13.33727 -13.22303 -13.10816 -12.63125 -12.55569 -12.43795 -12.31140 -12.11359 -11.77281 -11.45298 -11.44645 -11.19474 -11.04119 -11.03248 -10.77093 -10.52254 -9.82912 -9.55418 -9.43753 -9.15742 -9.05989 -8.92759 -8.23559 -6.49580 -6.20878 -3.91641 0.35506 1.90946 1.95790 2.41899 2.63492 3.08585 3.09671 3.24019 3.28408 3.33364 3.55743 3.75993 4.01711 4.21046 4.28539 4.43877 4.56313 4.65352 4.79457 4.90492 4.91745 5.03556 5.10538 5.14084 5.17318 5.25756 5.32513 5.33594 5.46865 5.52828 5.60024 5.63315 5.74830 5.77262 5.89431 5.92206 6.02875 6.13895 6.55715 6.70026 7.08929 7.51908 7.59759 7.66675 8.35611 8.59583 9.24151 10.86490 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026736 B = 0.001814 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.037283 B =15431.124216 C =15868.796713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.100 3.900 3 N -0.600 5.600 4 C 0.108 3.892 5 C 0.107 3.893 6 N -0.737 5.737 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.608 3.392 20 O -0.504 6.504 21 C -0.115 4.115 22 O -0.184 6.184 23 C 0.198 3.802 24 N -0.493 5.493 25 C 0.085 3.915 26 C -0.086 4.086 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.399 0.601 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.256 0.744 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.357 -6.902 -19.498 31.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.332 5.332 4 C -0.015 4.015 5 C -0.018 4.018 6 N -0.392 5.392 7 C 0.319 3.681 8 O -0.390 6.390 9 C -0.303 4.303 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.746 3.254 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 C 0.396 3.604 20 O -0.381 6.381 21 C -0.170 4.170 22 O -0.070 6.070 23 C -0.027 4.027 24 N -0.223 5.223 25 C -0.039 4.039 26 C -0.143 4.143 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.232 0.768 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.271 0.729 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.449 -7.420 -21.005 31.627 hybrid contribution -1.472 1.121 2.464 3.082 sum -23.921 -6.299 -18.541 30.914 Atomic orbital electron populations 1.22172 0.95163 1.02644 1.02411 1.21815 0.95069 0.81311 1.04038 1.47710 1.65243 1.14875 1.05404 1.21666 0.95848 0.99488 0.84466 1.21559 0.95401 0.98075 0.86813 1.45826 1.13345 1.55893 1.24182 1.20316 0.81249 0.80269 0.86250 1.90710 1.45209 1.40810 1.62228 1.23525 1.07704 1.02929 0.96173 1.85416 1.00952 1.69130 1.27864 1.22828 0.99995 1.37570 1.08030 0.90949 1.24999 0.94660 0.95597 0.98365 1.70011 1.01222 1.40497 1.38556 0.86216 0.77413 0.79967 0.81851 1.19956 1.20820 1.19927 1.16438 0.78425 0.84612 0.80946 1.90902 1.43350 1.18523 1.85295 1.22759 1.08059 0.88961 0.97230 1.84711 1.57906 1.34944 1.29486 1.28397 0.97718 0.99599 0.77024 1.70386 1.13965 1.03115 1.34795 1.22121 0.97106 0.97503 0.87197 1.20457 0.99554 0.90652 1.03658 0.91117 0.92256 0.92314 0.89494 0.89358 0.88776 0.89274 0.91516 0.91005 0.76767 0.89105 0.89158 0.92127 0.72881 0.89763 0.90312 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 9.72 37.16 0.36 -0.45 16 2 C 0.10 0.61 5.66 -4.04 -0.02 0.59 16 3 N -0.60 -5.15 2.47 -175.21 -0.43 -5.58 16 4 C 0.11 0.90 5.47 -4.04 -0.02 0.88 16 5 C 0.11 1.27 6.00 -4.04 -0.02 1.25 16 6 N -0.74 -9.67 5.56 -60.29 -0.33 -10.01 16 7 C 0.53 10.00 7.85 -10.98 -0.09 9.92 16 8 O -0.52 -11.94 15.86 5.56 0.09 -11.85 16 9 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 12 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 15 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 C 0.61 6.53 7.62 -12.83 -0.10 6.43 16 20 O -0.50 -6.73 14.41 5.20 0.07 -6.65 16 21 C -0.12 -1.10 6.60 -36.84 -0.24 -1.34 16 22 O -0.18 -1.26 6.04 4.42 0.03 -1.23 16 23 C 0.20 1.08 13.21 52.25 0.69 1.77 16 24 N -0.49 -4.42 11.26 -10.89 -0.12 -4.54 16 25 C 0.08 0.84 7.16 -82.47 -0.59 0.25 16 26 C -0.09 -0.77 9.94 36.00 0.36 -0.41 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.35 6.70 -51.93 -0.35 0.00 16 30 H 0.09 0.54 5.74 -51.93 -0.30 0.24 16 31 H 0.09 0.46 8.06 -51.93 -0.42 0.05 16 32 H 0.09 0.84 7.50 -51.92 -0.39 0.45 16 33 H 0.09 0.52 8.07 -51.93 -0.42 0.10 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.40 3.85 8.47 -40.82 -0.35 3.50 16 37 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 38 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 39 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.26 0.00 8.06 -52.49 -0.42 -0.42 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 0.95 6.37 -51.93 -0.33 0.62 16 LS Contribution 380.84 15.07 5.74 5.74 Total: -1.00 -38.19 380.84 -6.62 -44.81 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.90 Total: -0.74 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 0.74 Total: 3.03 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.16 Total: -45.66 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.19 Total: -19.73 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.19 -6.62 -44.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704263260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.001 kcal (2) G-P(sol) polarization free energy of solvation -38.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds