Wall clock time and date at job start Tue Mar 31 2020 23:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46765 * 124.34663 * 2 1 4 4 C 1.54478 * 105.46982 * 197.01465 * 3 2 1 5 5 H 1.09001 * 110.96620 * 216.46508 * 4 3 2 6 6 C 1.50696 * 110.96783 * 92.74226 * 4 3 2 7 7 O 1.21280 * 120.00246 * 359.97438 * 6 4 3 8 8 N 1.34781 * 119.99718 * 179.97438 * 6 4 3 9 9 C 1.46501 * 119.99740 * 180.02562 * 8 6 4 10 10 C 1.53948 * 113.73955 * 253.74252 * 9 8 6 11 11 N 1.47813 * 86.03571 * 222.08434 * 10 9 8 12 12 C 1.34774 * 134.45731 * 204.64360 * 11 10 9 13 13 O 1.21287 * 120.00017 * 179.86391 * 12 11 10 14 14 C 1.50695 * 120.00433 * 359.86875 * 12 11 10 15 15 S 1.80994 * 109.47769 * 180.02562 * 14 12 11 16 16 C 1.76195 * 100.00237 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00356 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00312 * 179.97438 * 16 15 14 19 19 N 1.31632 * 119.99809 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00423 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47219 * 60.00077 * 20 18 16 22 22 H 1.48504 * 109.47551 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47411 * 300.00543 * 20 18 16 24 24 C 1.47585 * 91.05109 * 24.54800 * 11 10 9 25 25 C 1.54625 * 101.76675 * 334.58297 * 4 3 2 26 26 C 1.34413 * 124.34853 * 179.69940 * 2 1 3 27 27 O 1.21278 * 124.94446 * 359.57287 * 26 2 1 28 28 H 1.09001 * 109.47060 * 90.00488 * 1 2 3 29 29 H 1.09004 * 109.47073 * 209.99977 * 1 2 3 30 30 H 1.09000 * 109.47212 * 330.00059 * 1 2 3 31 31 H 1.08994 * 110.24801 * 316.01702 * 3 2 1 32 32 H 1.09000 * 110.24581 * 78.01201 * 3 2 1 33 33 H 0.97000 * 120.00401 * 359.97438 * 8 6 4 34 34 H 1.09000 * 112.95031 * 25.33331 * 9 8 6 35 35 H 1.08996 * 113.76947 * 336.34647 * 10 9 8 36 36 H 1.08996 * 113.77065 * 107.75404 * 10 9 8 37 37 H 1.09008 * 109.46831 * 300.00261 * 14 12 11 38 38 H 1.08997 * 109.47181 * 59.99265 * 14 12 11 39 39 H 0.96997 * 120.00261 * 179.97438 * 19 18 16 40 40 H 1.09006 * 113.76913 * 221.14961 * 24 11 10 41 41 H 1.09003 * 113.76946 * 89.75775 * 24 11 10 42 42 H 1.09002 * 110.48493 * 143.47881 * 25 4 3 43 43 H 1.08997 * 110.48708 * 265.98428 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7010 0.7487 -0.4357 5 1 4.4753 1.3011 0.0967 6 6 3.8753 0.8824 -1.9265 7 8 2.9668 1.3086 -2.6075 8 7 5.0410 0.5283 -2.5031 9 6 5.2107 0.6588 -3.9524 10 6 5.1845 -0.6851 -4.7029 11 7 6.3121 -0.1484 -5.4936 12 6 6.8046 -0.3955 -6.7236 13 8 7.7707 0.2184 -7.1246 14 6 6.1550 -1.4345 -7.6007 15 16 7.0401 -1.5331 -9.1764 16 6 6.0966 -2.7859 -9.9795 17 1 5.2544 -3.2351 -9.4742 18 6 6.4350 -3.1947 -11.2620 19 7 7.4612 -2.6469 -11.8781 20 14 5.4353 -4.5233 -12.1131 21 1 4.0247 -4.0768 -12.2396 22 1 5.9976 -4.7771 -13.4640 23 1 5.4890 -5.7728 -11.3124 24 6 6.6804 0.7681 -4.3970 25 6 3.6898 -0.7377 -0.0100 26 6 2.2235 -1.1097 0.0058 27 8 1.7946 -2.2441 0.0192 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.8984 1.9383 -0.7101 32 1 2.3305 1.6430 1.0004 33 1 5.7678 0.1878 -1.9584 34 1 4.5624 1.4182 -4.3895 35 1 5.4512 -1.5403 -4.0820 36 1 4.2765 -0.8462 -5.2840 37 1 6.1905 -2.4037 -7.1031 38 1 5.1166 -1.1579 -7.7835 39 1 7.6980 -2.9328 -12.7742 40 1 6.9645 1.7650 -4.7342 41 1 7.3875 0.3406 -3.6860 42 1 4.2327 -1.3458 -0.7336 43 1 4.1216 -0.8532 0.9841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704525991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:41 Heat of formation + Delta-G solvation = -58.120651 kcal Electronic energy + Delta-G solvation = -26432.997880 eV Core-core repulsion = 22413.176092 eV Total energy + Delta-G solvation = -4019.821788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.47126 -40.43388 -39.21585 -37.56498 -36.60261 -34.41529 -33.27823 -32.43592 -30.35937 -28.36082 -27.95560 -27.07678 -26.36466 -25.45924 -24.09600 -21.76786 -20.86707 -20.03649 -19.17586 -18.21630 -17.77463 -17.30940 -16.97691 -16.68583 -16.21456 -15.89712 -15.61024 -15.16271 -14.98281 -14.80576 -14.31793 -14.14455 -14.04150 -14.00106 -13.60046 -13.22684 -13.01207 -12.85259 -12.85188 -12.68833 -12.58444 -12.46845 -12.41555 -12.11076 -11.84256 -11.57105 -11.04860 -11.03615 -10.77576 -10.38573 -10.28287 -9.84725 -9.65972 -9.43604 -9.18225 -9.06514 -8.72943 -8.26820 -6.52220 -6.22203 -3.93479 2.00915 2.12863 2.32669 2.56432 2.77255 3.04222 3.24061 3.24228 3.29001 3.51749 3.62631 3.72974 3.98667 4.05169 4.19660 4.26790 4.44648 4.59133 4.76978 4.77384 4.79410 4.84055 5.00395 5.05146 5.11114 5.12565 5.12971 5.19284 5.30288 5.34730 5.38865 5.52108 5.54053 5.84929 5.90110 5.99082 6.00996 6.12449 6.61848 6.90098 7.58963 7.64515 7.68840 7.70924 8.34601 8.45345 9.22978 10.85196 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015888 B = 0.002043 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.948855 B =13703.753101 C =14914.996490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.619 5.619 3 C 0.116 3.884 4 C -0.127 4.127 5 H 0.129 0.871 6 C 0.523 3.477 7 O -0.524 6.524 8 N -0.717 5.717 9 C 0.111 3.889 10 C 0.090 3.910 11 N -0.649 5.649 12 C 0.561 3.439 13 O -0.512 6.512 14 C -0.146 4.146 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.920 3.080 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.274 1.274 24 C 0.103 3.897 25 C -0.146 4.146 26 C 0.515 3.485 27 O -0.528 6.528 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.405 0.595 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.715 9.529 30.710 33.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.353 5.353 3 C -0.007 4.007 4 C -0.149 4.149 5 H 0.147 0.853 6 C 0.308 3.692 7 O -0.399 6.399 8 N -0.369 5.369 9 C 0.006 3.994 10 C -0.034 4.034 11 N -0.389 5.389 12 C 0.350 3.650 13 O -0.385 6.385 14 C -0.296 4.296 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.746 3.254 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.021 4.021 25 C -0.186 4.186 26 C 0.302 3.698 27 O -0.404 6.404 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.240 0.760 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.061 10.124 29.206 31.944 hybrid contribution -1.339 -1.741 0.182 2.204 sum -9.400 8.382 29.388 31.973 Atomic orbital electron populations 1.21560 0.77537 1.03032 1.02374 1.48078 1.06833 1.07069 1.73363 1.22017 0.88287 0.88115 1.02319 1.22344 1.00273 0.98299 0.93950 0.85307 1.20275 0.82300 0.77002 0.89602 1.90759 1.40189 1.44455 1.64468 1.45867 1.16111 1.66637 1.08249 1.23194 0.97856 0.98844 0.79536 1.23696 0.90670 0.96860 0.92217 1.49783 1.33438 1.42105 1.13590 1.20034 0.82851 0.82883 0.79202 1.90723 1.26204 1.49754 1.71806 1.23484 1.04378 0.99172 1.02590 1.85377 1.40669 1.51976 1.05268 1.22812 1.17777 1.24448 1.03353 0.90945 1.24994 0.95407 0.96947 0.96212 1.70006 1.25617 1.40983 1.13684 0.86211 0.79864 0.80990 0.78366 1.19903 1.20781 1.19919 1.23367 0.94877 0.96012 0.87795 1.22369 0.95940 0.94722 1.05565 1.20759 0.89022 0.84519 0.75526 1.90761 1.78472 1.21021 1.50185 0.92202 0.90615 0.90873 0.88331 0.89977 0.75973 0.85301 0.89446 0.89232 0.89254 0.89183 0.92099 0.89158 0.89654 0.87370 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 10.97 59.85 0.66 1.26 16 2 N -0.62 -4.50 3.33 -180.28 -0.60 -5.10 16 3 C 0.12 0.51 6.68 -3.12 -0.02 0.48 16 4 C -0.13 -0.42 3.54 -90.14 -0.32 -0.74 16 5 H 0.13 -0.03 8.14 -51.93 -0.42 -0.46 16 6 C 0.52 3.51 7.09 -10.99 -0.08 3.43 16 7 O -0.52 -5.80 15.15 5.56 0.08 -5.72 16 8 N -0.72 -3.70 5.30 -55.34 -0.29 -3.99 16 9 C 0.11 0.90 4.40 -70.14 -0.31 0.59 16 10 C 0.09 0.90 8.43 -2.84 -0.02 0.87 16 11 N -0.65 -8.84 3.61 -178.32 -0.64 -9.48 16 12 C 0.56 10.78 8.07 -10.99 -0.09 10.69 16 13 O -0.51 -11.83 16.59 5.55 0.09 -11.74 16 14 C -0.15 -3.03 5.90 36.00 0.21 -2.82 16 15 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 16 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 17 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 20 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.10 0.95 8.59 -2.96 -0.03 0.93 16 25 C -0.15 -0.63 6.40 -26.74 -0.17 -0.80 16 26 C 0.51 4.69 8.02 -10.86 -0.09 4.60 16 27 O -0.53 -7.22 17.59 5.56 0.10 -7.12 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.55 7.02 -51.93 -0.36 0.19 16 32 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.41 0.84 8.71 -40.82 -0.36 0.48 16 34 H 0.13 1.25 7.51 -51.93 -0.39 0.86 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 38 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 0.59 8.11 -51.93 -0.42 0.17 16 42 H 0.11 0.45 7.84 -51.93 -0.41 0.05 16 43 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -41.04 383.97 -8.16 -49.20 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -6.12 Total: -4.41 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.06 Total: 5.39 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: -0.80 Total: -44.15 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: 0.27 Total: -24.58 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -41.04 -8.16 -49.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704525991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.925 kcal (2) G-P(sol) polarization free energy of solvation -41.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds