Wall clock time and date at job start Tue Mar 31 2020 23:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21279 * 120.00016 * 2 1 4 4 N 1.34776 * 120.00094 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00105 * 179.97438 * 4 2 1 6 6 C 1.50700 * 109.46989 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99971 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99604 * 180.02562 * 6 5 4 9 9 C 1.47865 * 126.94638 * 0.02562 * 8 6 5 10 10 C 1.55486 * 105.16881 * 181.92345 * 9 8 6 11 11 H 1.09004 * 116.03536 * 159.75070 * 10 9 8 12 12 C 1.57435 * 99.68912 * 32.85652 * 10 9 8 13 13 C 1.49290 * 126.94136 * 180.02562 * 8 6 5 14 14 H 1.08997 * 116.15488 * 15.84026 * 13 8 6 15 15 C 1.56022 * 104.08803 * 246.69803 * 13 8 6 16 16 N 1.47868 * 105.10491 * 288.76560 * 15 13 8 17 17 C 1.34778 * 126.94421 * 181.98430 * 16 15 13 18 18 O 1.21278 * 119.99748 * 180.02562 * 17 16 15 19 19 C 1.50697 * 120.00209 * 0.02562 * 17 16 15 20 20 S 1.80999 * 109.47181 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99825 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99855 * 179.72221 * 21 20 19 24 24 N 1.31630 * 119.99849 * 180.27695 * 23 21 20 25 25 Si 1.86800 * 120.00065 * 0.28024 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99557 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00077 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99899 * 25 23 21 29 29 H 1.09004 * 109.47077 * 269.99999 * 1 2 3 30 30 H 1.09000 * 109.47266 * 29.99295 * 1 2 3 31 31 H 1.08990 * 109.47404 * 149.99962 * 1 2 3 32 32 H 0.96998 * 119.99605 * 359.97438 * 4 2 1 33 33 H 1.09005 * 109.46676 * 60.00166 * 5 4 2 34 34 H 1.08999 * 109.47150 * 300.00466 * 5 4 2 35 35 H 1.09002 * 110.31549 * 300.90789 * 9 8 6 36 36 H 1.08994 * 110.32081 * 62.99175 * 9 8 6 37 37 H 1.08994 * 112.53483 * 191.70491 * 12 10 9 38 38 H 1.09001 * 112.31212 * 64.17140 * 12 10 9 39 39 H 1.09010 * 110.31381 * 169.86026 * 15 13 8 40 40 H 1.08994 * 110.40231 * 47.72115 * 15 13 8 41 41 H 1.08999 * 109.47278 * 59.99800 * 19 17 16 42 42 H 1.09002 * 109.46837 * 300.00183 * 19 17 16 43 43 H 0.97005 * 119.99878 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1482 -2.5880 -0.0010 7 8 3.3600 -3.5098 -0.0009 8 7 5.4733 -2.8342 -0.0009 9 6 6.5630 -1.8347 -0.0004 10 6 7.8766 -2.6650 -0.0509 11 1 8.7644 -2.1354 -0.3969 12 6 7.3847 -3.8871 -0.9129 13 6 6.1374 -4.1713 -0.0013 14 1 5.5083 -5.0202 -0.2687 15 6 6.8424 -4.2456 1.3886 16 7 7.9698 -3.2929 1.3003 17 6 8.8917 -3.0386 2.2500 18 8 9.7679 -2.2262 2.0423 19 6 8.8338 -3.7637 3.5697 20 16 10.1960 -3.2076 4.6239 21 6 9.8934 -4.1871 6.0569 22 1 9.0578 -4.8711 6.0770 23 6 10.7325 -4.0843 7.1578 24 7 10.5097 -4.8200 8.2262 25 14 12.1781 -2.9017 7.1230 26 1 11.7472 -1.5779 7.6398 27 1 13.2729 -3.4330 7.9741 28 1 12.6634 -2.7541 5.7272 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6959 -2.0072 -0.0005 33 1 4.0095 -0.6535 0.8889 34 1 4.0089 -0.6531 -0.8910 35 1 6.4871 -1.1917 -0.8772 36 1 6.5281 -1.2372 0.9104 37 1 8.0963 -4.7127 -0.9116 38 1 7.1014 -3.5933 -1.9237 39 1 7.2128 -5.2544 1.5716 40 1 6.1550 -3.9462 2.1797 41 1 8.9208 -4.8367 3.3989 42 1 7.8843 -3.5498 4.0605 43 1 11.0959 -4.7479 8.9957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704597240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:44 Heat of formation + Delta-G solvation = -66.531462 kcal Electronic energy + Delta-G solvation = -26979.044639 eV Core-core repulsion = 22958.858131 eV Total energy + Delta-G solvation = -4020.186508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.61010 -40.16623 -39.11548 -38.07737 -34.84512 -34.20211 -32.47591 -31.54246 -30.78780 -30.27950 -28.81332 -27.39208 -25.95693 -25.64342 -22.76584 -21.80097 -21.00612 -20.25741 -18.98213 -18.16055 -17.58311 -17.34095 -16.95973 -16.60038 -16.40630 -15.95151 -15.78025 -15.21313 -15.03215 -14.75245 -14.25744 -14.15186 -13.91087 -13.67453 -13.47248 -13.26117 -13.10648 -13.00795 -12.84267 -12.82333 -12.42142 -12.34300 -12.28838 -12.00675 -11.83818 -11.71526 -11.30257 -11.04180 -10.65721 -10.47460 -10.37434 -9.90271 -9.70839 -9.62782 -9.18343 -9.04079 -8.76675 -8.55758 -6.97345 -6.32362 -4.04980 2.03003 2.11886 2.23084 2.49328 2.78559 2.89017 3.04512 3.30288 3.46939 3.52227 3.72216 4.03369 4.06132 4.08929 4.29397 4.41235 4.43942 4.56099 4.76086 4.79289 4.87133 4.92063 4.99323 5.03048 5.04931 5.06715 5.08901 5.19902 5.33403 5.36606 5.40158 5.41557 5.49041 5.62468 5.71876 5.85407 5.93812 6.01850 6.92051 7.05387 7.40526 7.52024 7.78012 7.90524 8.27476 8.38039 9.13468 10.76792 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.002367 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.628253 B =11827.003062 C =12601.188681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.547 6.547 4 N -0.721 5.721 5 C 0.102 3.898 6 C 0.532 3.468 7 O -0.538 6.538 8 N -0.617 5.617 9 C 0.084 3.916 10 C 0.127 3.873 11 H 0.141 0.859 12 C -0.145 4.145 13 C 0.124 3.876 14 H 0.140 0.860 15 C 0.091 3.909 16 N -0.629 5.629 17 C 0.553 3.447 18 O -0.514 6.514 19 C -0.119 4.119 20 S -0.141 6.141 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.879 5.879 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.413 0.587 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.593 3.148 -22.387 28.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.300 3.700 3 O -0.424 6.424 4 N -0.377 5.377 5 C -0.025 4.025 6 C 0.320 3.680 7 O -0.416 6.416 8 N -0.352 5.352 9 C -0.040 4.040 10 C 0.023 3.977 11 H 0.159 0.841 12 C -0.184 4.184 13 C 0.022 3.978 14 H 0.158 0.842 15 C -0.033 4.033 16 N -0.367 5.367 17 C 0.342 3.658 18 O -0.388 6.388 19 C -0.269 4.269 20 S 0.086 5.914 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.251 0.749 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.251 4.610 -22.385 27.476 hybrid contribution -0.630 -0.987 0.715 1.372 sum -15.881 3.622 -21.670 27.109 Atomic orbital electron populations 1.21864 0.90968 1.05066 1.05123 1.20870 0.90846 0.82957 0.75311 1.90750 1.70792 1.31380 1.49515 1.45843 1.05827 1.10090 1.75943 1.21029 0.82497 0.93952 1.05030 1.20119 0.80880 0.91123 0.75876 1.90712 1.54049 1.46095 1.50701 1.49198 1.04498 1.08713 1.72784 1.22986 0.86261 0.91533 1.03182 1.23818 0.96897 0.93960 0.83042 0.84128 1.24262 0.96813 0.98907 0.98428 1.24003 0.92282 0.86837 0.94696 0.84209 1.22878 0.88479 0.94347 0.97594 1.49300 1.29325 1.42998 1.15101 1.20006 0.79601 0.82077 0.84126 1.90717 1.34338 1.34206 1.79544 1.23261 1.05360 1.03214 0.95068 1.84784 1.34995 1.57865 1.13800 1.22292 1.18253 1.27361 0.99027 0.89391 1.24720 0.97269 0.95186 0.94148 1.69938 1.38356 1.38813 1.04451 0.86732 0.82520 0.81531 0.81044 1.19189 1.19893 1.15915 0.88548 0.88643 0.89961 0.74937 0.88210 0.88282 0.89676 0.89857 0.88264 0.88795 0.89662 0.90457 0.88484 0.88671 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.30 36.01 0.37 -0.44 16 2 C 0.51 4.53 7.94 -10.99 -0.09 4.44 16 3 O -0.55 -7.16 17.10 5.56 0.10 -7.07 16 4 N -0.72 -5.72 5.53 -61.47 -0.34 -6.06 16 5 C 0.10 0.83 5.44 -5.19 -0.03 0.80 16 6 C 0.53 4.83 7.96 -10.98 -0.09 4.75 16 7 O -0.54 -6.22 16.01 5.56 0.09 -6.13 16 8 N -0.62 -4.94 2.95 -157.12 -0.46 -5.41 16 9 C 0.08 0.62 5.99 -1.97 -0.01 0.61 16 10 C 0.13 1.08 5.23 -62.65 -0.33 0.75 16 11 H 0.14 1.21 8.05 -51.93 -0.42 0.79 16 12 C -0.15 -0.89 6.83 -22.10 -0.15 -1.04 16 13 C 0.12 0.92 5.24 -62.55 -0.33 0.59 16 14 H 0.14 0.93 8.05 -51.93 -0.42 0.51 16 15 C 0.09 0.86 6.01 -1.67 -0.01 0.85 16 16 N -0.63 -7.47 2.95 -156.88 -0.46 -7.93 16 17 C 0.55 9.35 7.91 -10.99 -0.09 9.27 16 18 O -0.51 -10.47 16.20 5.56 0.09 -10.38 16 19 C -0.12 -2.25 5.44 36.00 0.20 -2.05 16 20 S -0.14 -3.51 18.54 -107.50 -1.99 -5.50 16 21 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 22 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 23 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 24 N -0.88 -26.35 13.97 55.49 0.78 -25.58 16 25 Si 0.86 21.57 27.74 -169.99 -4.72 16.86 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 28 H -0.24 -5.89 6.73 56.52 0.38 -5.51 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.41 2.89 7.44 -40.82 -0.30 2.58 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -37.48 377.50 -7.79 -45.26 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.21 Total: -0.39 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -0.34 Total: 6.64 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.49 Total: -44.98 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.27 Total: -23.58 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.72 Total: 16.86 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.48 -7.79 -45.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704597240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.268 kcal (2) G-P(sol) polarization free energy of solvation -37.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds