Wall clock time and date at job start Tue Mar 31 2020 23:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47055 * 2 1 4 4 C 1.52997 * 109.47312 * 120.00396 * 2 1 3 5 5 N 1.46900 * 109.47020 * 175.00017 * 4 2 1 6 6 C 1.46902 * 110.99632 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.46872 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99777 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99751 * 179.97438 * 7 6 5 10 10 C 1.37099 * 119.99598 * 179.97438 * 9 7 6 11 11 H 1.08001 * 120.00324 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99694 * 180.02562 * 10 9 7 13 13 N 1.31415 * 119.99572 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00173 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47188 * 89.99507 * 14 12 10 16 16 H 1.48497 * 109.47125 * 209.99821 * 14 12 10 17 17 H 1.48504 * 109.46905 * 329.99545 * 14 12 10 18 18 N 1.46503 * 109.46778 * 240.00297 * 2 1 3 19 19 C 1.34771 * 120.00053 * 84.99884 * 18 2 1 20 20 O 1.21279 * 120.00208 * 0.02562 * 19 18 2 21 21 C 1.50710 * 119.99860 * 179.97438 * 19 18 2 22 22 O 1.42899 * 109.47016 * 180.02562 * 21 19 18 23 23 C 1.36231 * 117.00027 * 179.97438 * 22 21 19 24 24 C 1.38663 * 122.58661 * 179.72825 * 23 22 21 25 25 C 1.33435 * 114.88358 * 180.26644 * 24 23 22 26 26 S 1.75870 * 109.66023 * 0.02562 * 25 24 23 27 27 C 1.33634 * 122.58424 * 0.02562 * 23 22 21 28 28 H 1.08998 * 109.46856 * 299.99883 * 1 2 3 29 29 H 1.08997 * 109.47060 * 60.00068 * 1 2 3 30 30 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46576 * 294.99686 * 4 2 1 32 32 H 1.08995 * 109.47237 * 54.99445 * 4 2 1 33 33 H 1.00897 * 111.00440 * 56.04500 * 5 4 2 34 34 H 1.09003 * 109.47493 * 299.99553 * 6 5 4 35 35 H 1.08996 * 109.47465 * 60.00029 * 6 5 4 36 36 H 0.96999 * 120.00297 * 0.02562 * 9 7 6 37 37 H 0.97006 * 119.99471 * 180.02562 * 13 12 10 38 38 H 0.97006 * 119.99815 * 264.99384 * 18 2 1 39 39 H 1.08999 * 109.46933 * 59.99676 * 21 19 18 40 40 H 1.08998 * 109.46880 * 299.99878 * 21 19 18 41 41 H 1.07995 * 122.55637 * 0.25476 * 24 23 22 42 42 H 1.08002 * 125.16817 * 180.02562 * 25 24 23 43 43 H 1.07998 * 125.19571 * 359.76196 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5041 -0.8267 1.1902 6 6 4.0305 -1.5149 2.3765 7 6 5.5318 -1.6045 2.2805 8 8 6.1067 -1.1402 1.3187 9 7 6.2356 -2.1996 3.2638 10 6 7.6014 -2.2815 3.1761 11 1 8.1132 -1.8689 2.3193 12 6 8.3270 -2.8955 4.1897 13 7 9.6361 -2.9736 4.1058 14 14 7.4416 -3.6099 5.6713 15 1 7.0913 -5.0277 5.4024 16 1 8.3278 -3.5359 6.8606 17 1 6.2019 -2.8339 5.9287 18 7 2.0183 -0.6906 -1.1963 19 6 2.1470 -0.0182 -2.3572 20 8 1.8590 1.1586 -2.4115 21 6 2.6498 -0.7285 -3.5876 22 8 2.6983 0.1898 -4.6813 23 6 3.1348 -0.2951 -5.8772 24 6 3.2226 0.4923 -7.0152 25 6 3.6641 -0.1410 -8.1035 26 16 3.9978 -1.8234 -7.7146 27 6 3.5058 -1.5678 -6.0455 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -0.1583 2.1369 32 1 1.6054 -1.7198 1.2951 33 1 3.9281 0.0825 1.0822 34 1 3.7560 -0.9572 3.2719 35 1 3.6097 -2.5190 2.4307 36 1 5.7759 -2.5706 4.0332 37 1 10.1426 -3.4026 4.8132 38 1 2.2491 -1.6318 -1.1527 39 1 1.9776 -1.5508 -3.8326 40 1 3.6491 -1.1203 -3.3980 41 1 2.9539 1.5383 -7.0203 42 1 3.7965 0.3108 -9.0755 43 1 3.5031 -2.3241 -5.2746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716006006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:18 Heat of formation + Delta-G solvation = -62.080534 kcal Electronic energy + Delta-G solvation = -26137.594227 eV Core-core repulsion = 22117.600725 eV Total energy + Delta-G solvation = -4019.993502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.45956 -39.43741 -38.52293 -36.86469 -36.02272 -34.40703 -33.77804 -31.73791 -31.50991 -29.36168 -28.54804 -27.82307 -25.10544 -23.97576 -23.16834 -21.64335 -20.63871 -19.96605 -19.43005 -18.61089 -18.39385 -17.38768 -16.98319 -16.65348 -16.49860 -15.90145 -15.32462 -14.96852 -14.85099 -14.47356 -14.35983 -14.25368 -14.05390 -13.59119 -13.37552 -13.24983 -13.04732 -12.95755 -12.73334 -12.52704 -12.28790 -12.14994 -12.08516 -11.78965 -11.75349 -11.21084 -11.20109 -11.16588 -11.05721 -10.63572 -10.01528 -9.94161 -9.61597 -9.19688 -9.12488 -8.66733 -8.28318 -8.26563 -8.21484 -6.34811 -3.86537 0.69726 1.33446 1.69499 2.40736 2.45391 2.51519 2.98507 3.03019 3.11697 3.50544 3.68718 3.95423 4.06569 4.46781 4.62225 4.65111 4.73946 4.77314 4.87966 4.96968 4.97518 5.11269 5.14120 5.19256 5.31876 5.45129 5.46572 5.55283 5.59594 5.64447 5.72773 5.79878 5.85897 5.91259 5.95913 6.34376 6.93540 6.95707 7.38701 7.43732 7.53894 8.09551 8.10310 8.55375 8.90975 9.38150 9.77890 10.78238 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.002121 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.845042 B =13196.241238 C =15275.367243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.088 0.912 4 C 0.048 3.952 5 N -0.668 5.668 6 C 0.048 3.952 7 C 0.448 3.552 8 O -0.564 6.564 9 N -0.590 5.590 10 C -0.306 4.306 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.880 5.880 14 Si 0.881 3.119 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.270 1.270 18 N -0.704 5.704 19 C 0.520 3.480 20 O -0.525 6.525 21 C 0.042 3.958 22 O -0.279 6.279 23 C 0.117 3.883 24 C -0.140 4.140 25 C -0.189 4.189 26 S 0.118 5.882 27 C -0.325 4.325 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.353 0.647 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.370 0.630 37 H 0.274 0.726 38 H 0.407 0.593 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.151 0.849 42 H 0.173 0.827 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.017 0.835 -15.665 25.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.106 0.894 4 C -0.082 4.082 5 N -0.301 5.301 6 C -0.085 4.085 7 C 0.234 3.766 8 O -0.446 6.446 9 N -0.229 5.229 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.520 5.520 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.357 5.357 19 C 0.305 3.695 20 O -0.401 6.401 21 C -0.036 4.036 22 O -0.192 6.192 23 C 0.061 3.939 24 C -0.171 4.171 25 C -0.324 4.324 26 S 0.379 5.621 27 C -0.461 4.461 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.173 0.827 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.242 0.758 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.169 0.831 42 H 0.190 0.810 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -19.155 0.338 -17.390 25.874 hybrid contribution -0.884 0.431 2.983 3.141 sum -20.039 0.769 -14.407 24.692 Atomic orbital electron populations 1.22149 0.94795 1.02318 1.02810 1.20963 0.93683 0.97573 0.83519 0.89352 1.22324 0.89397 1.00794 0.95724 1.60072 1.03164 1.27129 1.39702 1.21715 0.95094 1.00029 0.91664 1.19696 0.87926 0.84199 0.84791 1.90576 1.70992 1.50447 1.32572 1.42208 1.07888 1.53070 1.19769 1.19429 0.79559 1.36072 1.08386 0.86291 1.25054 0.95452 0.97647 0.98054 1.69627 1.05078 1.43174 1.34130 0.86659 0.79606 0.79978 0.83044 1.19595 1.20167 1.19562 1.45632 1.67056 1.14503 1.08499 1.19898 0.78142 0.87350 0.84121 1.90736 1.49016 1.15520 1.84781 1.22463 1.03367 0.92283 0.85528 1.86184 1.81138 1.36545 1.15295 1.17891 0.97878 0.91398 0.86749 1.19485 1.05457 1.02056 0.90133 1.25530 1.06614 0.97540 1.02739 1.84201 1.66240 1.08821 1.02874 1.25393 1.18019 1.00373 1.02290 0.91450 0.91781 0.92230 0.93663 0.90319 0.82715 0.93663 0.89443 0.79703 0.91577 0.75804 0.89218 0.88477 0.83111 0.81003 0.81440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.48 37.16 0.35 -0.97 16 2 C 0.15 1.47 2.82 -67.93 -0.19 1.28 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 4 C 0.05 0.46 5.24 -3.83 -0.02 0.44 16 5 N -0.67 -9.18 5.85 -115.05 -0.67 -9.85 16 6 C 0.05 0.72 6.17 -4.97 -0.03 0.69 16 7 C 0.45 9.78 7.82 -10.98 -0.09 9.70 16 8 O -0.56 -14.77 15.78 5.55 0.09 -14.68 16 9 N -0.59 -13.67 5.09 -10.96 -0.06 -13.73 16 10 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 11 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 12 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 13 N -0.88 -25.50 13.96 55.50 0.77 -24.72 16 14 Si 0.88 19.01 27.74 -169.99 -4.71 14.30 16 15 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 18 N -0.70 -7.17 4.80 -53.80 -0.26 -7.43 16 19 C 0.52 6.51 7.87 -10.98 -0.09 6.43 16 20 O -0.53 -8.72 16.16 -14.35 -0.23 -8.95 16 21 C 0.04 0.44 5.35 36.01 0.19 0.63 16 22 O -0.28 -3.61 9.74 -40.39 -0.39 -4.01 16 23 C 0.12 1.32 6.64 -41.04 -0.27 1.05 16 24 C -0.14 -1.36 10.17 -41.10 -0.42 -1.78 16 25 C -0.19 -1.48 11.22 29.05 0.33 -1.15 16 26 S 0.12 0.97 23.34 -107.50 -2.51 -1.53 16 27 C -0.33 -3.14 10.09 29.12 0.29 -2.85 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.35 5.45 8.43 -39.29 -0.33 5.12 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.37 7.48 5.76 -40.82 -0.24 7.25 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.41 3.46 8.60 -40.82 -0.35 3.11 16 39 H 0.09 0.66 7.86 -51.93 -0.41 0.25 16 40 H 0.10 0.92 7.85 -51.93 -0.41 0.51 16 41 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.17 1.34 7.02 -52.49 -0.37 0.97 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -35.70 383.63 -8.24 -43.93 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -5.86 Total: 15.11 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -0.19 Total: 5.78 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.21 Total: -55.73 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.54 Total: -27.64 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.30 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.70 -8.24 -43.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716006006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.148 kcal (2) G-P(sol) polarization free energy of solvation -35.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds