Wall clock time and date at job start Tue Mar 31 2020 23:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46804 * 2 1 4 4 C 1.46496 * 119.99858 * 90.00221 * 3 2 1 5 5 C 1.52997 * 109.46953 * 269.99454 * 4 3 2 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00072 * 180.02562 * 6 5 4 8 8 O 1.21617 * 120.00059 * 0.02562 * 7 6 5 9 9 C 1.47416 * 119.99857 * 179.97438 * 7 6 5 10 10 N 1.36072 * 126.44852 * 359.68956 * 9 7 6 11 11 C 1.29938 * 108.47617 * 179.86187 * 10 9 7 12 12 O 1.34046 * 109.24310 * 0.40336 * 11 10 9 13 13 C 1.34262 * 108.22851 * 359.74969 * 12 11 10 14 14 C 1.50699 * 126.52557 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99782 * 269.99447 * 3 2 1 16 16 O 1.21285 * 119.99988 * 180.02562 * 15 3 2 17 17 C 1.50706 * 120.00178 * 0.02562 * 15 3 2 18 18 S 1.80997 * 109.47088 * 179.97438 * 17 15 3 19 19 C 1.76197 * 99.99908 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99960 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00003 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99850 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99999 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47547 * 89.99704 * 23 21 19 25 25 H 1.48504 * 109.47187 * 209.99856 * 23 21 19 26 26 H 1.48508 * 109.47243 * 329.99076 * 23 21 19 27 27 H 1.09001 * 109.47714 * 300.00032 * 1 2 3 28 28 H 1.08996 * 109.47389 * 60.00345 * 1 2 3 29 29 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47069 * 239.99984 * 2 1 3 31 31 H 1.09000 * 109.46920 * 119.99791 * 2 1 3 32 32 H 1.09001 * 109.47062 * 149.99949 * 4 3 2 33 33 H 1.08996 * 109.47565 * 29.99414 * 4 3 2 34 34 H 1.09001 * 109.47289 * 60.00079 * 5 4 3 35 35 H 1.09004 * 109.47261 * 300.00335 * 5 4 3 36 36 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 37 37 H 1.08002 * 125.38008 * 180.11877 * 11 10 9 38 38 H 1.08997 * 109.47059 * 270.03972 * 14 13 12 39 39 H 1.08994 * 109.47030 * 30.03999 * 14 13 12 40 40 H 1.09004 * 109.47123 * 150.03881 * 14 13 12 41 41 H 1.08998 * 109.46409 * 299.99459 * 17 15 3 42 42 H 1.08994 * 109.47146 * 59.99267 * 17 15 3 43 43 H 0.97002 * 119.99466 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 1.2687 5 6 0.9874 2.7931 1.7103 6 7 1.2317 3.4842 2.9788 7 6 0.2434 4.1906 3.5626 8 8 -0.8513 4.2539 3.0366 9 6 0.4891 4.8855 4.8392 10 7 1.6542 4.8973 5.5421 11 6 1.4836 5.6176 6.6100 12 8 0.2250 6.0783 6.6358 13 6 -0.4084 5.6313 5.5396 14 6 -1.8406 5.9031 5.1577 15 6 2.2429 2.0165 -1.1672 16 8 2.6476 3.1599 -1.1672 17 6 1.9914 1.3062 -2.4724 18 16 2.3829 2.4153 -3.8481 19 6 2.0099 1.3592 -5.2082 20 1 1.6556 0.3545 -5.0304 21 6 2.1724 1.8180 -6.5081 22 7 2.6047 3.0422 -6.7247 23 14 1.7762 0.6985 -7.9500 24 1 0.3514 0.8689 -8.3322 25 1 2.6435 1.0506 -9.1029 26 1 2.0190 -0.7141 -7.5614 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.0643 2.7985 1.1384 33 1 2.5504 1.3452 2.0284 34 1 0.1855 2.0664 1.8406 35 1 0.6993 3.5197 0.9506 36 1 2.1048 3.4333 3.3985 37 1 2.2356 5.8107 7.3607 38 1 -2.4822 5.1296 5.5797 39 1 -2.1415 6.8763 5.5455 40 1 -1.9339 5.9000 4.0717 41 1 2.6214 0.4186 -2.5301 42 1 0.9434 1.0123 -2.5299 43 1 2.7178 3.3629 -7.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721138638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:19 Heat of formation + Delta-G solvation = -49.450753 kcal Electronic energy + Delta-G solvation = -26410.352569 eV Core-core repulsion = 22390.906735 eV Total energy + Delta-G solvation = -4019.445833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.84051 -39.97920 -39.37714 -36.21419 -35.28385 -34.87431 -32.77169 -32.42232 -31.35299 -29.88528 -28.51978 -27.31906 -25.48916 -24.43901 -23.34196 -23.00468 -21.97952 -20.87302 -19.28601 -18.47701 -17.71509 -17.30815 -16.85407 -16.54326 -16.29895 -15.78247 -15.40541 -15.17973 -14.91531 -14.79696 -14.33104 -13.97667 -13.89728 -13.69058 -13.64535 -13.42767 -13.31203 -13.02377 -12.81950 -12.56847 -12.33663 -11.87821 -11.84611 -11.75735 -11.47501 -11.22206 -11.06941 -11.02054 -10.98982 -10.74955 -10.39958 -9.80357 -9.44306 -9.41060 -9.14815 -9.05917 -8.69085 -8.22012 -6.49550 -6.20938 -3.91552 0.71763 1.65670 2.14013 2.60418 3.01226 3.03018 3.11111 3.22931 3.27845 3.31330 3.58056 3.69026 4.20771 4.22768 4.46249 4.65732 4.76949 4.79425 4.89189 5.01071 5.05152 5.07981 5.14045 5.21193 5.24258 5.36112 5.43498 5.53659 5.62423 5.62972 5.68378 5.76898 5.80297 5.91124 5.93220 6.07599 6.14015 6.24726 6.60690 6.95151 7.30541 7.46814 7.60260 7.92170 8.35819 8.51209 9.24325 10.86472 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021551 B = 0.001957 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.939551 B =14304.251996 C =14595.238442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 N -0.617 5.617 4 C 0.109 3.891 5 C 0.101 3.899 6 N -0.708 5.708 7 C 0.603 3.397 8 O -0.532 6.532 9 C -0.080 4.080 10 N -0.464 5.464 11 C 0.175 3.825 12 O -0.200 6.200 13 C 0.047 3.953 14 C -0.079 4.079 15 C 0.534 3.466 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.409 0.591 37 H 0.256 0.744 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 -1.048 28.840 29.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 N -0.354 5.354 4 C -0.015 4.015 5 C -0.023 4.023 6 N -0.360 5.360 7 C 0.388 3.612 8 O -0.409 6.409 9 C -0.199 4.199 10 N -0.192 5.192 11 C -0.054 4.054 12 O -0.087 6.087 13 C -0.010 4.010 14 C -0.135 4.135 15 C 0.322 3.678 16 O -0.385 6.385 17 C -0.300 4.300 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.244 0.756 37 H 0.271 0.729 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.133 0.509 28.120 28.426 hybrid contribution -0.684 -1.774 -0.331 1.930 sum -4.817 -1.265 27.788 28.231 Atomic orbital electron populations 1.22323 0.95882 1.02352 1.02951 1.21599 0.94583 0.82099 1.03390 1.47894 1.68108 1.14318 1.05047 1.21439 0.96928 0.97313 0.85856 1.21951 0.98708 0.96805 0.84837 1.45608 1.15039 1.51260 1.24074 1.16644 0.84289 0.78237 0.81982 1.90813 1.23679 1.62244 1.64135 1.21460 0.90897 1.07570 0.99991 1.70726 1.24960 1.18391 1.05169 1.28015 0.83968 0.94903 0.98484 1.84389 1.24986 1.59604 1.39699 1.23804 0.97038 0.95391 0.84774 1.20639 0.84667 1.03271 1.04962 1.20410 0.76247 0.86498 0.84602 1.90711 1.43633 1.17408 1.86737 1.23580 1.04880 1.04515 0.97065 1.85415 1.86833 1.17922 0.93374 1.22849 1.51785 1.01440 0.92175 0.90929 1.24996 0.94673 0.95563 0.98388 1.70021 1.42933 1.15647 1.21649 0.86170 0.78417 0.80196 0.80724 1.20268 1.20770 1.19694 0.92289 0.91748 0.91495 0.89668 0.90519 0.89078 0.90168 0.90834 0.90362 0.75602 0.72865 0.88877 0.89980 0.86766 0.89207 0.89089 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 10.24 37.16 0.38 -1.38 16 2 C 0.11 1.09 5.98 -4.04 -0.02 1.07 16 3 N -0.62 -8.34 2.47 -173.69 -0.43 -8.77 16 4 C 0.11 1.24 5.56 -4.05 -0.02 1.22 16 5 C 0.10 1.24 6.00 -4.04 -0.02 1.21 16 6 N -0.71 -7.97 5.55 -61.38 -0.34 -8.31 16 7 C 0.60 7.69 7.81 -12.52 -0.10 7.59 16 8 O -0.53 -7.99 14.80 5.26 0.08 -7.91 16 9 C -0.08 -0.87 6.99 -83.02 -0.58 -1.46 16 10 N -0.46 -4.42 11.06 -11.48 -0.13 -4.55 16 11 C 0.17 1.11 13.19 51.96 0.69 1.79 16 12 O -0.20 -1.56 10.73 6.51 0.07 -1.49 16 13 C 0.05 0.43 7.44 -35.08 -0.26 0.17 16 14 C -0.08 -0.56 9.88 36.01 0.36 -0.21 16 15 C 0.53 9.99 7.69 -10.98 -0.08 9.90 16 16 O -0.51 -11.54 15.44 5.55 0.09 -11.46 16 17 C -0.15 -3.02 4.71 36.01 0.17 -2.85 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16 20 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 23 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 27 H 0.06 0.58 6.26 -51.93 -0.33 0.25 16 28 H 0.06 0.77 7.22 -51.93 -0.37 0.40 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.89 6.44 -51.93 -0.33 0.56 16 31 H 0.08 0.59 7.89 -51.93 -0.41 0.18 16 32 H 0.09 1.17 7.42 -51.93 -0.39 0.79 16 33 H 0.08 0.66 7.89 -51.93 -0.41 0.25 16 34 H 0.07 0.87 6.26 -51.93 -0.33 0.54 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.41 3.88 8.20 -40.82 -0.33 3.54 16 37 H 0.26 0.24 8.06 -52.49 -0.42 -0.18 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.11 1.01 6.48 -51.93 -0.34 0.68 16 41 H 0.09 1.66 7.40 -51.92 -0.38 1.28 16 42 H 0.09 1.71 7.18 -51.92 -0.37 1.34 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -37.58 380.61 -6.39 -43.97 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.65 Total: 1.63 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.69 Total: 4.15 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.16 Total: -47.12 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.23 Total: -20.86 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.58 -6.39 -43.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721138638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.484 kcal (2) G-P(sol) polarization free energy of solvation -37.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds