Wall clock time and date at job start Tue Mar 31 2020 23:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.52996 * 109.47530 * 239.99206 * 2 1 3 5 5 N 1.46498 * 109.47059 * 184.99929 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47398 * 180.02562 * 9 8 6 11 11 C 1.41379 * 126.80391 * 124.70841 * 10 9 8 12 12 C 1.35452 * 103.98315 * 179.89111 * 11 10 9 13 13 O 1.34036 * 106.44568 * 0.37093 * 12 11 10 14 14 N 1.20917 * 111.57261 * 359.74961 * 13 12 11 15 15 N 1.46506 * 109.46609 * 119.99404 * 2 1 3 16 16 C 1.34782 * 119.99726 * 274.99704 * 15 2 1 17 17 O 1.21278 * 120.00302 * 0.02562 * 16 15 2 18 18 C 1.50704 * 119.99703 * 179.97438 * 16 15 2 19 19 S 1.80999 * 109.46986 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99763 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00242 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99547 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00072 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99596 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46970 * 90.00304 * 24 22 20 26 26 H 1.48503 * 109.46793 * 209.99826 * 24 22 20 27 27 H 1.48498 * 109.47251 * 329.99895 * 24 22 20 28 28 H 1.09001 * 109.47478 * 300.00790 * 1 2 3 29 29 H 1.09000 * 109.46800 * 60.01246 * 1 2 3 30 30 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47066 * 65.00196 * 4 2 1 32 32 H 1.08994 * 109.46974 * 305.00344 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 35 35 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 36 36 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 37 37 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 38 38 H 1.08001 * 128.00433 * 0.03099 * 11 10 9 39 39 H 1.08007 * 126.77149 * 180.09628 * 12 11 10 40 40 H 0.97000 * 120.00390 * 95.00648 * 15 2 1 41 41 H 1.09000 * 109.47086 * 300.00860 * 18 16 15 42 42 H 1.09006 * 109.46761 * 60.00688 * 18 16 15 43 43 H 0.97002 * 119.99419 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8264 -1.1903 6 6 4.1727 -1.4338 -2.1879 7 8 3.5697 -1.8889 -3.1367 8 6 5.6741 -1.5475 -2.1245 9 6 6.1838 -2.2732 -3.3712 10 6 7.6851 -2.3874 -3.3075 11 6 8.4488 -3.5738 -3.3969 12 6 9.7299 -3.1473 -3.2886 13 8 9.6755 -1.8163 -3.1405 14 7 8.5354 -1.4137 -3.1534 15 7 2.0183 -0.6905 1.1963 16 6 2.1470 -0.0180 2.3572 17 8 1.8582 1.1587 2.4117 18 6 2.6486 -0.7284 3.5880 19 16 2.7090 0.4346 4.9735 20 6 3.3121 -0.6305 6.2410 21 1 3.5221 -1.6667 6.0209 22 6 3.5173 -0.1376 7.5222 23 7 3.2608 1.1253 7.7905 24 14 4.1560 -1.2670 8.8661 25 1 5.6404 -1.2278 8.8815 26 1 3.6353 -0.8150 10.1813 27 1 3.7001 -2.6557 8.6038 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5136 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.7518 -0.1585 -2.1369 32 1 1.6055 -1.7199 -1.2949 33 1 3.9825 -0.4627 -0.4313 34 1 6.1124 -0.5505 -2.0802 35 1 5.9587 -2.1092 -1.2348 36 1 5.7455 -3.2702 -3.4159 37 1 5.8992 -1.7110 -4.2607 38 1 8.0932 -4.5855 -3.5246 39 1 10.6194 -3.7596 -3.3119 40 1 2.2490 -1.6317 1.1529 41 1 1.9757 -1.5502 3.8328 42 1 3.6478 -1.1210 3.3989 43 1 3.4046 1.4697 8.6858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721910887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:17 Heat of formation + Delta-G solvation = -25.913585 kcal Electronic energy + Delta-G solvation = -25801.156924 eV Core-core repulsion = 21782.731739 eV Total energy + Delta-G solvation = -4018.425185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.29673 -40.23925 -39.32430 -36.54430 -35.62885 -33.88334 -32.58027 -32.46710 -31.71945 -31.29688 -28.66029 -27.28627 -25.52808 -25.02473 -23.51919 -21.88575 -21.32150 -20.46096 -20.38830 -18.30258 -17.99824 -17.87397 -17.24094 -16.68007 -16.59409 -16.07454 -15.71657 -15.21961 -14.97473 -14.83987 -14.53646 -14.18450 -14.01776 -13.67509 -13.40059 -13.21216 -13.06504 -12.83333 -12.72655 -12.66447 -12.57989 -12.09974 -12.00595 -11.88886 -11.38057 -11.20134 -11.09458 -11.06367 -10.79484 -10.47869 -10.17843 -9.98195 -9.85893 -9.53361 -9.37352 -9.12104 -9.05465 -8.28958 -6.54830 -6.25611 -3.96622 1.13195 1.83012 2.33243 2.78340 2.90631 2.95620 3.01582 3.19520 3.24982 3.28645 3.63073 3.77498 4.10934 4.16546 4.35794 4.44382 4.67988 4.72894 4.77185 4.87508 5.02598 5.04397 5.09491 5.10597 5.12792 5.22212 5.31153 5.43851 5.51031 5.51220 5.54940 5.60782 5.72294 5.81232 5.88640 6.00860 6.07373 6.16057 6.51736 7.15446 7.55453 7.58511 7.88606 7.90228 8.31175 8.50432 9.19875 10.81755 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008704 B = 0.002251 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.286418 B =12436.359849 C =15078.769129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.729 5.729 6 C 0.517 3.483 7 O -0.543 6.543 8 C -0.139 4.139 9 C -0.023 4.023 10 C 0.015 3.985 11 C -0.232 4.232 12 C -0.059 4.059 13 O 0.100 5.900 14 N -0.362 5.362 15 N -0.738 5.738 16 C 0.533 3.467 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.406 0.594 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.172 0.828 39 H 0.217 0.783 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.872 -10.722 -23.870 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.113 0.887 4 C -0.011 4.011 5 N -0.381 5.381 6 C 0.303 3.697 7 O -0.421 6.421 8 C -0.179 4.179 9 C -0.062 4.062 10 C -0.144 4.144 11 C -0.253 4.253 12 C -0.140 4.140 13 O 0.033 5.967 14 N -0.065 5.065 15 N -0.393 5.393 16 C 0.319 3.681 17 O -0.387 6.387 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.242 0.758 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.190 0.810 39 H 0.233 0.767 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.807 -7.582 -24.181 25.999 hybrid contribution 0.998 -3.365 1.134 3.689 sum 6.805 -10.947 -23.047 26.407 Atomic orbital electron populations 1.22117 0.94129 1.02546 1.03232 1.21149 0.95068 0.97909 0.83281 0.88661 1.21714 0.79927 1.01573 0.97932 1.46031 1.07891 1.59917 1.24295 1.20571 0.89853 0.77229 0.82011 1.90712 1.70434 1.47869 1.33064 1.21631 0.92098 1.03864 1.00310 1.19703 0.84981 1.03079 0.98426 1.23690 0.98481 0.89296 1.02896 1.22795 0.92473 1.00859 1.09215 1.26066 1.00742 0.84577 1.02624 1.84857 1.23442 1.22068 1.66336 1.73864 0.89823 1.23856 1.19005 1.46161 1.69625 1.14021 1.09517 1.20346 0.76791 0.87227 0.83700 1.90713 1.48000 1.15750 1.84273 1.23543 1.03639 1.04939 0.98379 1.85409 1.86341 1.12749 0.98758 1.22855 1.51060 0.98162 0.96365 0.90944 1.24996 0.95065 0.95557 0.97966 1.70015 1.45374 1.13249 1.21594 0.86167 0.79009 0.80177 0.80145 1.20250 1.20728 1.19699 0.91024 0.91492 0.92195 0.89952 0.90744 0.75834 0.88098 0.88398 0.88716 0.89026 0.81036 0.76680 0.76755 0.89207 0.89269 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.48 37.16 0.35 -1.22 16 2 C 0.13 1.33 2.73 -67.93 -0.19 1.15 16 3 H 0.10 1.13 7.58 -51.93 -0.39 0.74 16 4 C 0.11 0.97 5.23 -4.04 -0.02 0.95 16 5 N -0.73 -6.31 5.39 -60.30 -0.32 -6.64 16 6 C 0.52 5.02 7.83 -10.98 -0.09 4.94 16 7 O -0.54 -6.97 15.98 5.55 0.09 -6.88 16 8 C -0.14 -1.09 5.67 -27.89 -0.16 -1.25 16 9 C -0.02 -0.19 5.10 -27.89 -0.14 -0.33 16 10 C 0.02 0.13 6.59 -82.10 -0.54 -0.41 16 11 C -0.23 -1.44 11.12 -39.38 -0.44 -1.88 16 12 C -0.06 -0.31 12.30 29.74 0.37 0.06 16 13 O 0.10 0.86 11.20 17.19 0.19 1.05 16 14 N -0.36 -3.70 12.06 33.42 0.40 -3.30 16 15 N -0.74 -8.53 4.52 -53.80 -0.24 -8.77 16 16 C 0.53 9.05 7.81 -10.98 -0.09 8.96 16 17 O -0.51 -10.83 15.52 5.56 0.09 -10.74 16 18 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 19 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 20 C -0.54 -14.95 9.50 30.94 0.29 -14.66 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 24 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.41 3.30 8.14 -40.82 -0.33 2.97 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 37 H 0.09 0.80 8.10 -51.92 -0.42 0.38 16 38 H 0.17 0.65 8.06 -52.49 -0.42 0.22 16 39 H 0.22 0.18 8.06 -52.48 -0.42 -0.24 16 40 H 0.40 3.68 8.60 -40.82 -0.35 3.33 16 41 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 42 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 390.37 15.07 5.88 5.88 Total: -1.00 -36.66 390.37 -7.05 -43.71 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.11 Total: 2.89 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -0.52 Total: -4.42 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.57 Total: -43.77 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.37 Total: -16.57 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.66 -7.05 -43.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721910887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.792 kcal (2) G-P(sol) polarization free energy of solvation -36.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds