Wall clock time and date at job start Tue Mar 31 2020 23:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46751 * 2 1 4 4 C 1.47200 * 109.47443 * 239.99523 * 2 1 3 5 5 N 2.60800 * 109.47625 * 239.99395 * 2 1 3 6 6 C 1.50701 * 109.46773 * 119.99069 * 2 1 3 7 7 O 1.21283 * 119.99528 * 86.28548 * 6 2 1 8 8 N 1.34777 * 120.00435 * 266.28075 * 6 2 1 9 9 C 1.47024 * 125.64663 * 354.94343 * 8 6 2 10 10 C 1.54317 * 107.26805 * 181.09153 * 9 8 6 11 11 C 1.55157 * 102.94692 * 22.19125 * 10 9 8 12 12 O 1.42904 * 111.03457 * 82.58530 * 11 10 9 13 13 C 1.53001 * 111.00807 * 206.42177 * 11 10 9 14 14 N 1.46500 * 109.47156 * 297.19589 * 13 11 10 15 15 C 1.34772 * 120.00072 * 179.97438 * 14 13 11 16 16 O 1.21286 * 119.99983 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00017 * 180.02562 * 15 14 13 18 18 S 1.80997 * 109.47004 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00159 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00079 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00363 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00142 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00269 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47249 * 269.99656 * 23 21 19 25 25 H 1.48508 * 109.47366 * 29.99219 * 23 21 19 26 26 H 1.48499 * 109.47504 * 149.99763 * 23 21 19 27 27 C 1.47425 * 125.64863 * 174.97745 * 8 6 2 28 28 H 1.09000 * 109.46738 * 175.60751 * 1 2 3 29 29 H 1.08995 * 109.47490 * 295.61147 * 1 2 3 30 30 H 1.08997 * 109.46891 * 55.61653 * 1 2 3 31 31 H 1.09000 * 109.87710 * 300.50697 * 9 8 6 32 32 H 1.08997 * 109.88213 * 61.52042 * 9 8 6 33 33 H 1.09002 * 110.72323 * 263.82462 * 10 9 8 34 34 H 1.09006 * 110.71936 * 140.55625 * 10 9 8 35 35 H 0.96695 * 114.00016 * 64.60763 * 12 11 10 36 36 H 1.08990 * 109.47106 * 177.19530 * 13 11 10 37 37 H 1.08998 * 109.46962 * 57.19477 * 13 11 10 38 38 H 0.97007 * 120.00118 * 0.02562 * 14 13 11 39 39 H 1.09007 * 109.47150 * 59.99788 * 17 15 14 40 40 H 1.08998 * 109.46953 * 299.99809 * 17 15 14 41 41 H 0.96995 * 120.00169 * 179.97438 * 22 21 19 42 42 H 1.08999 * 110.36717 * 37.00402 * 27 8 6 43 43 H 1.08996 * 110.46574 * 274.72497 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0208 -0.6940 -1.2018 5 7 2.3996 -1.2296 -2.1292 6 6 2.0323 -0.7102 1.2306 7 8 2.1702 -1.9152 1.2214 8 7 2.3283 -0.0065 2.3413 9 6 2.3084 1.4590 2.4578 10 6 2.7417 1.8100 3.8967 11 6 3.5263 0.5475 4.3413 12 8 4.8743 0.5885 3.8688 13 6 3.4861 0.3840 5.8620 14 7 4.1490 1.5275 6.4938 15 6 4.2342 1.5993 7.8369 16 8 3.7617 0.7175 8.5226 17 6 4.9156 2.7759 8.4869 18 16 4.8668 2.5831 10.2859 19 6 5.7066 4.0532 10.7741 20 1 6.0685 4.7423 10.0254 21 6 5.9039 4.3251 12.1207 22 7 5.4633 3.4850 13.0333 23 14 6.7936 5.8840 12.6383 24 1 8.2506 5.6137 12.7346 25 1 6.5532 6.9487 11.6313 26 1 6.2843 6.3289 13.9604 27 6 2.7262 -0.5787 3.6404 28 1 -0.3633 -1.0247 -0.0787 29 1 -0.3634 0.4442 0.9266 30 1 -0.3633 0.5803 -0.8481 31 1 3.0056 1.8970 1.7434 32 1 1.3018 1.8322 2.2698 33 1 1.8714 1.9675 4.5339 34 1 3.3883 2.6876 3.9015 35 1 5.4005 1.3083 4.2430 36 1 4.0010 -0.5348 6.1423 37 1 2.4493 0.3356 6.1949 38 1 4.5259 2.2334 5.9455 39 1 4.4005 3.6947 8.2062 40 1 5.9524 2.8245 8.1543 41 1 5.6015 3.6749 13.9744 42 1 3.3564 -1.4555 3.4916 43 1 1.8458 -0.8403 4.2273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722271466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:56 Heat of formation + Delta-G solvation = -88.121925 kcal Electronic energy + Delta-G solvation = -26354.016475 eV Core-core repulsion = 22332.893734 eV Total energy + Delta-G solvation = -4021.122741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.12363 -39.73948 -38.67709 -37.02224 -36.05526 -34.32225 -33.87505 -32.48952 -31.52311 -30.31168 -29.21498 -26.53774 -25.59994 -25.18543 -23.81736 -21.26067 -20.83817 -20.34166 -18.44610 -18.20091 -17.96977 -17.26114 -16.50819 -16.36699 -15.80953 -15.63584 -15.57230 -15.20955 -14.85995 -14.74450 -14.41308 -14.02938 -13.86353 -13.74500 -13.54623 -13.43667 -13.25585 -13.10070 -12.96645 -12.80354 -12.64872 -12.52898 -12.40876 -12.10757 -12.01605 -11.80677 -11.44166 -11.11738 -11.08587 -10.82157 -10.56811 -10.38746 -9.88519 -9.58545 -9.26685 -9.16135 -9.10047 -8.31770 -6.57575 -6.27693 -3.99152 1.78979 1.97132 2.28761 2.55855 2.86243 2.93301 3.17978 3.21895 3.25961 3.28570 3.40544 3.54118 3.75484 3.85057 4.05108 4.14295 4.19713 4.23460 4.30945 4.54851 4.67233 4.87516 4.93140 4.98702 5.00455 5.07713 5.12278 5.17046 5.25896 5.34831 5.38918 5.40633 5.48604 5.60104 5.66187 5.77104 6.02016 6.32567 6.78464 7.03903 7.08143 7.44067 7.47508 7.53515 8.28777 8.42775 9.17736 10.79678 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.034815 B = 0.001725 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.049002 B =16229.419121 C =16471.514051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.006 4.006 3 H 0.133 0.867 4 C 0.217 3.783 5 N -0.408 5.408 6 C 0.541 3.459 7 O -0.522 6.522 8 N -0.609 5.609 9 C 0.099 3.901 10 C -0.159 4.159 11 C 0.109 3.891 12 O -0.541 6.541 13 C 0.105 3.895 14 N -0.740 5.740 15 C 0.534 3.466 16 O -0.511 6.511 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.537 4.537 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.272 1.272 26 H -0.282 1.282 27 C 0.123 3.877 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.380 0.620 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.394 0.606 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.095 0.905 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 0.299 -24.737 26.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 H 0.150 0.850 4 C -0.102 4.102 5 N -0.083 5.083 6 C 0.327 3.673 7 O -0.397 6.397 8 N -0.344 5.344 9 C -0.024 4.024 10 C -0.197 4.197 11 C 0.066 3.934 12 O -0.347 6.347 13 C -0.020 4.020 14 N -0.396 5.396 15 C 0.320 3.680 16 O -0.385 6.385 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.686 4.686 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.202 1.202 25 H -0.197 1.197 26 H -0.207 1.207 27 C 0.001 3.999 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.229 0.771 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.228 0.772 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.947 -3.268 -25.214 27.301 hybrid contribution 1.438 3.211 0.037 3.518 sum -8.509 -0.057 -25.177 26.576 Atomic orbital electron populations 1.21747 0.88906 1.04706 1.04475 1.18788 0.99249 0.99698 0.85312 0.84962 1.28111 0.94036 0.93988 0.94084 1.81230 1.07647 1.07701 1.11724 1.19585 0.77882 0.87100 0.82770 1.90809 1.52169 1.13987 1.82703 1.48258 1.67712 1.07595 1.10805 1.22141 1.02037 0.80004 0.98209 1.23387 1.02064 0.98564 0.95715 1.22504 0.83494 0.95273 0.92099 1.86608 1.21449 1.56139 1.70496 1.21752 0.99582 0.90922 0.89781 1.45896 1.61755 1.24809 1.07132 1.20330 0.78969 0.87588 0.81086 1.90729 1.45786 1.39657 1.62298 1.23533 1.02685 0.98213 1.06024 1.85444 1.76023 1.31555 0.90219 1.22854 1.43033 1.07874 0.94789 0.90894 1.24993 0.95496 0.97604 0.95446 1.70009 1.43428 1.35566 1.01184 0.86166 0.79540 0.81691 0.78081 1.20248 1.19699 1.20725 1.22138 0.98456 0.96364 0.82991 0.90651 0.89825 0.89969 0.90543 0.90294 0.88565 0.88895 0.77100 0.90108 0.90055 0.77194 0.89144 0.89132 0.92114 0.88625 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.35 9.13 37.16 0.34 -0.01 16 2 C -0.01 -0.03 2.79 -94.56 -0.26 -0.29 16 3 H 0.13 0.15 6.97 -51.93 -0.36 -0.21 16 4 C 0.22 1.88 14.13 -20.76 -0.29 1.59 16 5 N -0.41 -4.81 18.54 42.15 0.78 -4.03 16 6 C 0.54 4.32 6.84 -10.98 -0.08 4.25 16 7 O -0.52 -6.65 16.65 5.56 0.09 -6.56 16 8 N -0.61 -3.75 3.33 -170.53 -0.57 -4.32 16 9 C 0.10 0.28 6.01 -3.07 -0.02 0.26 16 10 C -0.16 -0.54 5.68 -24.90 -0.14 -0.68 16 11 C 0.11 0.66 0.95 -88.47 -0.08 0.58 16 12 O -0.54 -3.89 13.19 -35.23 -0.46 -4.36 16 13 C 0.10 0.91 4.88 -4.04 -0.02 0.89 16 14 N -0.74 -7.33 5.18 -60.30 -0.31 -7.64 16 15 C 0.53 8.63 7.85 -10.99 -0.09 8.54 16 16 O -0.51 -10.60 15.86 5.55 0.09 -10.51 16 17 C -0.15 -2.77 6.16 36.01 0.22 -2.55 16 18 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 19 C -0.54 -14.67 9.50 30.94 0.29 -14.38 16 20 H 0.07 1.87 7.80 -52.48 -0.41 1.46 16 21 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 22 N -0.87 -25.42 13.22 55.49 0.73 -24.68 16 23 Si 0.92 20.68 29.55 -169.99 -5.02 15.65 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 C 0.12 0.87 6.14 -2.53 -0.02 0.86 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 30 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.08 0.16 7.91 -51.93 -0.41 -0.25 16 32 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 33 H 0.10 0.32 8.04 -51.93 -0.42 -0.10 16 34 H 0.09 0.20 8.10 -51.93 -0.42 -0.23 16 35 H 0.38 1.64 8.07 45.56 0.37 2.01 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.72 8.12 -51.93 -0.42 0.29 16 38 H 0.39 2.53 7.37 -40.82 -0.30 2.23 16 39 H 0.09 1.47 8.14 -51.91 -0.42 1.05 16 40 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.10 0.89 7.99 -51.93 -0.41 0.48 16 43 H 0.09 0.55 8.02 -51.93 -0.42 0.13 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -39.69 386.66 -6.60 -46.29 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -5.30 Total: -2.93 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.24 Total: 1.00 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.64 Total: -40.67 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.28 Total: -21.43 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.69 -6.60 -46.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722271466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.837 kcal (2) G-P(sol) polarization free energy of solvation -39.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds