Wall clock time and date at job start Tue Mar 31 2020 23:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 N 1.46496 * 109.47535 * 185.00041 * 4 2 1 6 6 C 1.34777 * 120.00105 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99953 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00049 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.47074 * 179.97438 * 8 6 5 10 10 C 1.76198 * 99.99858 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00106 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00045 * 180.02562 * 10 9 8 13 13 N 1.31630 * 119.99921 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00135 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46836 * 90.00264 * 14 12 10 16 16 H 1.48495 * 109.47455 * 210.00249 * 14 12 10 17 17 H 1.48497 * 109.46812 * 330.00595 * 14 12 10 18 18 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 19 19 C 1.46505 * 119.99873 * 59.99624 * 18 2 1 20 20 C 1.34771 * 120.00092 * 239.99940 * 18 2 1 21 21 O 1.21287 * 120.00010 * 359.97438 * 20 18 2 22 22 C 1.50696 * 120.00122 * 179.97438 * 20 18 2 23 23 C 1.50698 * 109.47490 * 179.97438 * 22 20 18 24 24 C 1.41380 * 126.80352 * 125.00099 * 23 22 20 25 25 C 1.35448 * 103.98745 * 180.02562 * 24 23 22 26 26 O 1.34042 * 106.44536 * 359.97438 * 25 24 23 27 27 N 1.20918 * 111.56609 * 359.71738 * 26 25 24 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 32 32 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 33 33 H 0.97001 * 120.00379 * 0.02562 * 5 4 2 34 34 H 1.09000 * 109.47033 * 300.00347 * 8 6 5 35 35 H 1.09000 * 109.46983 * 60.00273 * 8 6 5 36 36 H 0.97000 * 119.99952 * 179.97438 * 13 12 10 37 37 H 1.08999 * 109.46723 * 90.00515 * 19 18 2 38 38 H 1.08997 * 109.46979 * 210.00219 * 19 18 2 39 39 H 1.09005 * 109.46961 * 330.00570 * 19 18 2 40 40 H 1.09000 * 109.47333 * 300.00318 * 22 20 18 41 41 H 1.09005 * 109.46872 * 59.99879 * 22 20 18 42 42 H 1.08005 * 128.00681 * 0.03423 * 24 23 22 43 43 H 1.08003 * 126.77843 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4284 -2.1911 7 8 3.5700 -1.8826 -3.1403 8 6 5.6750 -1.5361 -2.1311 9 16 6.2783 -2.3895 -3.6089 10 6 8.0100 -2.3767 -3.2841 11 1 8.3863 -1.9241 -2.3785 12 6 8.8907 -2.9482 -4.1919 13 7 10.1843 -2.9390 -3.9490 14 14 8.2399 -3.7317 -5.7579 15 1 8.1821 -2.7110 -6.8349 16 1 9.1423 -4.8363 -6.1708 17 1 6.8780 -4.2704 -5.5128 18 7 2.0184 -0.6906 1.1962 19 6 1.6644 -2.0932 1.4281 20 6 2.7932 -0.0357 2.0833 21 8 3.0866 1.1254 1.8911 22 6 3.2951 -0.7459 3.3140 23 6 4.1330 0.2011 4.1340 24 6 3.9486 0.5328 5.4959 25 6 4.9464 1.4107 5.7570 26 8 5.6350 1.5530 4.6157 27 7 5.1734 0.8712 3.7302 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6054 -1.7198 -1.2952 32 1 1.7517 -0.1584 -2.1369 33 1 3.9824 -0.4629 -0.4316 34 1 6.1093 -0.5374 -2.0850 35 1 5.9637 -2.0991 -1.2435 36 1 10.7997 -3.3388 -4.5833 37 1 2.4157 -2.7377 0.9718 38 1 1.6238 -2.2852 2.5002 39 1 0.6903 -2.3002 0.9846 40 1 2.4471 -1.0881 3.9073 41 1 3.9005 -1.6025 3.0176 42 1 3.1883 0.1700 6.1717 43 1 5.1476 1.8997 6.6987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734746201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:25 Heat of formation + Delta-G solvation = -4.401912 kcal Electronic energy + Delta-G solvation = -27043.101139 eV Core-core repulsion = 23025.608770 eV Total energy + Delta-G solvation = -4017.492369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.16554 -40.59629 -39.12544 -36.97675 -34.94479 -34.21270 -32.41788 -32.34561 -31.88793 -29.66047 -29.32213 -27.35757 -26.00973 -25.50051 -23.45881 -22.92478 -21.13809 -20.41062 -19.43018 -18.11308 -17.91857 -17.85962 -17.38663 -16.70609 -16.44163 -16.03474 -15.76018 -15.34865 -15.03864 -14.92421 -14.05699 -14.00017 -13.92477 -13.62535 -13.49131 -13.40150 -13.21181 -13.00304 -12.81053 -12.77033 -12.58835 -12.51792 -12.23027 -11.86620 -11.51488 -11.28221 -11.24146 -10.98856 -10.57941 -10.52885 -10.06635 -9.86607 -9.83944 -9.53095 -9.09106 -9.00346 -8.94671 -8.47860 -6.89140 -6.25928 -3.97640 1.29850 1.89126 2.24642 2.55381 2.79686 2.99206 3.03870 3.32743 3.36305 3.51859 3.68292 3.76224 4.05800 4.25196 4.35361 4.46174 4.64318 4.68066 4.76843 4.79431 4.81888 4.85900 4.91930 5.08936 5.12371 5.12861 5.22112 5.25121 5.28991 5.37207 5.40736 5.54859 5.64878 5.67803 5.78141 5.81249 6.06427 6.11314 6.53161 6.91908 7.61177 7.78711 7.97296 8.07229 8.45713 8.49877 9.20024 10.83430 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010990 B = 0.002806 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.146218 B = 9975.876912 C =12032.777601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 H 0.109 0.891 4 C 0.113 3.887 5 N -0.733 5.733 6 C 0.532 3.468 7 O -0.521 6.521 8 C -0.124 4.124 9 S -0.141 6.141 10 C -0.521 4.521 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.881 5.881 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 N -0.611 5.611 19 C 0.071 3.929 20 C 0.515 3.485 21 O -0.521 6.521 22 C -0.060 4.060 23 C 0.018 3.982 24 C -0.231 4.231 25 C -0.062 4.062 26 O 0.108 5.892 27 N -0.331 5.331 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.399 0.601 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.270 0.730 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.171 0.829 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.170 5.176 22.377 31.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.127 0.873 4 C -0.012 4.012 5 N -0.388 5.388 6 C 0.318 3.682 7 O -0.396 6.396 8 C -0.274 4.274 9 S 0.085 5.915 10 C -0.668 4.668 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.159 1.159 18 N -0.346 5.346 19 C -0.072 4.072 20 C 0.302 3.698 21 O -0.396 6.396 22 C -0.101 4.101 23 C -0.142 4.142 24 C -0.252 4.252 25 C -0.144 4.144 26 O 0.038 5.962 27 N -0.031 5.031 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.234 0.766 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.188 0.812 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -21.194 5.070 19.437 29.201 hybrid contribution 0.325 0.033 1.602 1.635 sum -20.868 5.103 21.040 30.070 Atomic orbital electron populations 1.22054 0.93556 1.02834 1.03122 1.21400 0.94901 0.98453 0.83221 0.87307 1.21652 0.81186 1.01141 0.97229 1.45899 1.06905 1.61539 1.24408 1.20268 0.89433 0.76830 0.81699 1.90691 1.69880 1.46475 1.32548 1.23274 0.93430 1.05541 1.05196 1.84717 1.06980 1.74508 1.25263 1.22329 0.88625 1.44607 1.11285 0.89390 1.24716 0.94096 0.94558 0.97955 1.69944 1.01535 1.43554 1.36687 0.86728 0.81251 0.80197 0.83623 1.19210 1.19959 1.15944 1.47887 1.51191 1.12794 1.22743 1.21890 1.02021 0.81199 1.02111 1.20389 0.78135 0.87073 0.84177 1.90778 1.56297 1.16556 1.75978 1.20019 0.99265 0.96971 0.93814 1.22857 0.96481 1.01356 0.93463 1.22654 1.03352 1.03241 0.95986 1.26018 0.94382 1.00939 0.93039 1.84911 1.46203 1.49863 1.15263 1.73948 1.11717 1.05856 1.11610 0.90723 0.91740 0.91766 0.91202 0.90394 0.76633 0.88512 0.88643 0.91961 0.91790 0.90820 0.90390 0.86625 0.86664 0.81188 0.76788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.17 37.16 0.34 -0.64 16 2 C 0.12 1.09 2.80 -67.93 -0.19 0.90 16 3 H 0.11 1.18 6.90 -51.93 -0.36 0.82 16 4 C 0.11 1.25 4.97 -4.04 -0.02 1.23 16 5 N -0.73 -10.24 5.39 -60.30 -0.32 -10.57 16 6 C 0.53 9.87 7.85 -10.98 -0.09 9.78 16 7 O -0.52 -11.38 15.86 5.56 0.09 -11.30 16 8 C -0.12 -2.55 6.16 36.01 0.22 -2.33 16 9 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 10 C -0.52 -15.43 10.04 30.94 0.31 -15.11 16 11 H 0.09 2.73 8.03 -52.48 -0.42 2.31 16 12 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 13 N -0.88 -27.10 13.97 55.49 0.78 -26.33 16 14 Si 0.86 22.15 27.74 -169.99 -4.72 17.44 16 15 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 18 N -0.61 -4.96 2.24 -173.93 -0.39 -5.35 16 19 C 0.07 0.37 9.40 59.85 0.56 0.94 16 20 C 0.52 5.28 7.37 -10.99 -0.08 5.20 16 21 O -0.52 -7.59 14.93 5.55 0.08 -7.51 16 22 C -0.06 -0.45 4.85 -29.04 -0.14 -0.59 16 23 C 0.02 0.18 6.10 -82.10 -0.50 -0.32 16 24 C -0.23 -1.62 11.12 -39.38 -0.44 -2.06 16 25 C -0.06 -0.42 12.30 29.74 0.37 -0.05 16 26 O 0.11 1.19 11.20 17.17 0.19 1.38 16 27 N -0.33 -4.37 11.48 33.42 0.38 -3.99 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.33 6.66 -51.93 -0.35 -0.02 16 31 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.40 5.36 7.87 -40.82 -0.32 5.04 16 34 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 35 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 36 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.21 6.44 -51.93 -0.33 -0.12 16 39 H 0.08 0.33 6.43 -51.93 -0.33 -0.01 16 40 H 0.12 0.45 7.40 -51.93 -0.38 0.06 16 41 H 0.12 0.76 8.11 -51.93 -0.42 0.33 16 42 H 0.17 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.22 0.42 8.06 -52.48 -0.42 0.00 16 LS Contribution 378.88 15.07 5.71 5.71 Total: -1.00 -39.44 378.88 -5.81 -45.24 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.86 Total: 1.24 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 0.25 Total: -0.30 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.44 Total: -46.23 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.36 Total: -17.42 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.72 Total: 17.44 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -39.44 -5.81 -45.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734746201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.841 kcal (2) G-P(sol) polarization free energy of solvation -39.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds