Wall clock time and date at job start Tue Mar 31 2020 23:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 C 1.52999 * 109.47338 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47580 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00516 * 180.02562 * 7 6 5 9 9 O 1.21610 * 119.99730 * 359.97438 * 8 7 6 10 10 C 1.47420 * 120.00189 * 179.97438 * 8 7 6 11 11 C 1.36096 * 126.44679 * 179.97438 * 10 8 7 12 12 O 1.34253 * 106.95015 * 179.97438 * 11 10 8 13 13 C 1.34050 * 108.22385 * 0.02562 * 12 11 10 14 14 N 1.29934 * 109.24788 * 359.74013 * 13 12 11 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47012 * 89.99727 * 24 22 20 26 26 H 1.48501 * 109.47302 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46788 * 330.00118 * 24 22 20 28 28 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 29 29 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 30 30 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 32 32 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 33 33 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 34 34 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 35 35 H 1.09003 * 109.47199 * 300.00414 * 6 5 4 36 36 H 1.09002 * 109.47200 * 60.00255 * 6 5 4 37 37 H 0.97009 * 120.00152 * 359.97438 * 7 6 5 38 38 H 1.08006 * 126.52343 * 0.02562 * 11 10 8 39 39 H 1.08001 * 125.37730 * 180.02562 * 13 12 11 40 40 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0748 -1.3347 -2.5629 7 7 5.5349 -1.2318 -2.6244 8 6 6.2079 -1.7968 -3.6462 9 8 5.6032 -2.3926 -4.5170 10 6 7.6771 -1.6928 -3.7083 11 6 8.4843 -2.2108 -4.6739 12 8 9.7449 -1.8856 -4.3463 13 6 9.7136 -1.1839 -3.2045 14 7 8.4810 -1.0564 -2.8138 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.2404 1.1182 7.7959 24 14 4.1282 -1.2762 8.8729 25 1 5.6125 -1.2380 8.8939 26 1 3.6027 -0.8253 10.1866 27 1 3.6725 -2.6643 8.6073 28 1 -0.3632 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4262 35 1 3.7865 -2.3849 -2.5190 36 1 3.6402 -0.8754 -3.4508 37 1 6.0173 -0.7562 -1.9300 38 1 8.1703 -2.7752 -5.5396 39 1 10.5763 -0.7835 -2.6928 40 1 2.2492 -1.6319 1.1524 41 1 1.9698 -1.5528 3.8298 42 1 3.6437 -1.1227 3.4038 43 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735020247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:15 Heat of formation + Delta-G solvation = -66.532596 kcal Electronic energy + Delta-G solvation = -25579.651871 eV Core-core repulsion = 21559.465314 eV Total energy + Delta-G solvation = -4020.186558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.91467 -39.91813 -39.40668 -36.84983 -35.40042 -35.15027 -32.50240 -32.42024 -31.08913 -30.60731 -28.50773 -26.80028 -25.48262 -24.27394 -23.22391 -22.13501 -21.49055 -20.83066 -20.29905 -18.89065 -17.84431 -17.24020 -16.95093 -16.59755 -16.54030 -16.01835 -15.77538 -15.40660 -14.94381 -14.80675 -14.62485 -14.41152 -14.02252 -13.98904 -13.68520 -13.32744 -13.14146 -12.75389 -12.59960 -12.34053 -11.93398 -11.87866 -11.82748 -11.42609 -11.35526 -11.19369 -11.06558 -11.02527 -10.90554 -10.75585 -10.58186 -9.81292 -9.74352 -9.40952 -9.36225 -9.07079 -8.88005 -8.23294 -6.49750 -6.21751 -3.92097 0.62897 1.55581 2.17575 2.72101 2.89183 3.04999 3.11676 3.22067 3.27964 3.32553 3.54348 3.73789 4.20476 4.32913 4.33358 4.34733 4.64482 4.76172 4.97002 5.00512 5.09882 5.13374 5.13644 5.21237 5.24898 5.38242 5.45846 5.50775 5.57209 5.61771 5.71091 5.77482 5.88961 5.89541 6.03169 6.07797 6.14488 6.22766 6.70339 6.84482 7.16743 7.59494 7.74003 7.74871 8.35138 8.64289 9.23615 10.85644 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009633 B = 0.002050 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.939069 B =13654.914462 C =16013.736573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.088 0.912 4 C -0.121 4.121 5 C -0.134 4.134 6 C 0.119 3.881 7 N -0.711 5.711 8 C 0.602 3.398 9 O -0.539 6.539 10 C -0.077 4.077 11 C 0.017 3.983 12 O -0.199 6.199 13 C 0.183 3.817 14 N -0.466 5.466 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.412 0.588 38 H 0.231 0.769 39 H 0.257 0.743 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.906 -7.260 -26.374 28.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.160 4.160 5 C -0.172 4.172 6 C -0.004 4.004 7 N -0.362 5.362 8 C 0.387 3.613 9 O -0.417 6.417 10 C -0.197 4.197 11 C -0.057 4.057 12 O -0.084 6.084 13 C -0.046 4.046 14 N -0.196 5.196 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.248 0.752 38 H 0.247 0.753 39 H 0.273 0.727 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.772 -5.233 -26.221 27.582 hybrid contribution 1.378 -2.620 0.665 3.034 sum 8.149 -7.853 -25.556 27.950 Atomic orbital electron populations 1.22183 0.95375 1.02027 1.02662 1.20882 0.93966 0.97678 0.83682 0.89357 1.21792 0.94489 1.01644 0.98027 1.21833 0.96378 1.01653 0.97365 1.21477 0.78673 1.01368 0.98900 1.45831 1.08198 1.55810 1.26372 1.16734 0.83900 0.78762 0.81892 1.90835 1.68565 1.43236 1.39031 1.21806 0.95899 1.05949 0.96024 1.25338 0.79830 0.99755 1.00797 1.84465 1.30465 1.55656 1.37839 1.28207 0.97550 0.94600 0.84237 1.70787 1.01602 1.19669 1.27508 1.46123 1.69328 1.13819 1.09610 1.20290 0.76805 0.87233 0.83794 1.90698 1.48257 1.15815 1.84431 1.23539 1.03641 1.04829 0.98466 1.85388 1.86531 1.12912 0.98545 1.22866 1.51082 0.98143 0.96242 0.90970 1.24995 0.95107 0.95555 0.97972 1.70021 1.45548 1.13251 1.21470 0.86169 0.78979 0.80196 0.80154 1.20281 1.20755 1.19715 0.91651 0.91929 0.92594 0.90975 0.90081 0.90754 0.90618 0.91088 0.91106 0.75226 0.75304 0.72750 0.76984 0.89313 0.89342 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.48 37.16 0.35 -1.36 16 2 C 0.14 1.52 2.57 -67.93 -0.17 1.35 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 4 C -0.12 -0.87 4.75 -26.73 -0.13 -1.00 16 5 C -0.13 -1.01 5.22 -26.74 -0.14 -1.15 16 6 C 0.12 0.95 5.67 -4.04 -0.02 0.92 16 7 N -0.71 -6.43 5.55 -61.39 -0.34 -6.78 16 8 C 0.60 6.37 7.81 -12.52 -0.10 6.27 16 9 O -0.54 -6.96 16.89 5.27 0.09 -6.87 16 10 C -0.08 -0.70 6.99 -83.02 -0.58 -1.28 16 11 C 0.02 0.11 11.95 29.96 0.36 0.47 16 12 O -0.20 -1.20 10.73 6.52 0.07 -1.13 16 13 C 0.18 0.98 13.19 51.96 0.69 1.66 16 14 N -0.47 -3.99 11.06 -11.48 -0.13 -4.12 16 15 N -0.73 -9.13 4.53 -53.80 -0.24 -9.38 16 16 C 0.53 9.60 7.81 -10.98 -0.09 9.51 16 17 O -0.52 -11.46 15.53 5.55 0.09 -11.37 16 18 C -0.15 -3.06 6.16 36.01 0.22 -2.83 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 21 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 24 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.62 7.75 -51.92 -0.40 0.22 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.41 3.48 8.20 -40.82 -0.33 3.15 16 38 H 0.23 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.26 0.13 8.06 -52.49 -0.42 -0.29 16 40 H 0.40 3.86 8.60 -40.82 -0.35 3.51 16 41 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 391.34 15.07 5.90 5.90 Total: -1.00 -37.96 391.34 -6.58 -44.55 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.10 Total: 2.45 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 0.59 Total: -0.37 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.02 Total: -45.66 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.25 Total: -19.37 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.96 -6.58 -44.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735020247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.987 kcal (2) G-P(sol) polarization free energy of solvation -37.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds