Wall clock time and date at job start Tue Mar 31 2020 23:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36446 * 124.84717 * 2 1 4 4 C 1.34485 * 108.85896 * 179.97438 * 3 2 1 5 5 C 1.46690 * 106.33204 * 0.02562 * 4 3 2 6 6 C 1.47262 * 126.94735 * 179.97438 * 5 4 3 7 7 O 1.21622 * 120.00035 * 180.02562 * 6 5 4 8 8 N 1.34776 * 119.99546 * 0.02562 * 6 5 4 9 9 C 1.46500 * 119.99923 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47226 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.47434 * 64.99688 * 10 9 8 12 12 C 1.52997 * 109.47114 * 184.99495 * 10 9 8 13 13 O 1.42903 * 109.47059 * 55.00009 * 12 10 9 14 14 N 1.46498 * 109.46963 * 304.99288 * 10 9 8 15 15 C 1.34777 * 119.99828 * 154.72290 * 14 10 9 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 10 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 10 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46661 * 60.00586 * 23 21 19 25 25 H 1.48501 * 109.47391 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47355 * 300.00441 * 23 21 19 27 27 C 1.34656 * 124.85583 * 180.25967 * 2 1 3 28 28 H 1.09001 * 109.46828 * 90.03316 * 1 2 3 29 29 H 1.08997 * 109.47026 * 210.02164 * 1 2 3 30 30 H 1.08994 * 109.47687 * 330.02799 * 1 2 3 31 31 H 1.08007 * 125.57128 * 359.95236 * 3 2 1 32 32 H 1.07998 * 126.83809 * 180.02562 * 4 3 2 33 33 H 0.96998 * 119.99957 * 359.97438 * 8 6 5 34 34 H 1.08995 * 109.47176 * 59.99567 * 9 8 6 35 35 H 1.09008 * 109.46559 * 299.99697 * 9 8 6 36 36 H 1.08997 * 109.47241 * 175.00015 * 12 10 9 37 37 H 1.09002 * 109.47280 * 295.00109 * 12 10 9 38 38 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 39 39 H 0.97001 * 120.00384 * 335.00737 * 14 10 9 40 40 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 41 41 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 42 42 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 43 43 H 1.08004 * 125.80064 * 0.06273 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2446 1.1198 0.0000 4 6 3.5375 0.7494 0.0006 5 6 3.5463 -0.7175 0.0003 6 6 4.7285 -1.5956 0.0002 7 8 4.5886 -2.8038 -0.0005 8 7 5.9654 -1.0603 0.0009 9 6 7.1415 -1.9338 0.0002 10 6 8.4110 -1.0798 0.0018 11 1 8.4697 -0.5178 0.9340 12 6 9.6363 -1.9873 -0.1244 13 8 9.5032 -2.8083 -1.2866 14 7 8.3745 -0.1486 -1.1285 15 6 9.0679 1.0058 -1.0732 16 8 9.7261 1.2714 -0.0897 17 6 9.0254 1.9667 -2.2333 18 16 10.0505 3.4107 -1.8587 19 6 9.8250 4.3384 -3.3396 20 1 9.1965 3.9522 -4.1285 21 6 10.4541 5.5662 -3.4919 22 7 11.2197 6.0373 -2.5303 23 14 10.2157 6.5495 -5.0621 24 1 8.7742 6.8610 -5.2369 25 1 10.9890 7.8144 -4.9765 26 1 10.6945 5.7547 -6.2215 27 6 2.2346 -1.1050 -0.0050 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5133 31 1 1.8827 2.1374 -0.0007 32 1 4.3980 1.4019 0.0011 33 1 6.0768 -0.0968 0.0011 34 1 7.1269 -2.5621 -0.8903 35 1 7.1266 -2.5637 0.8897 36 1 10.5340 -1.3755 -0.2126 37 1 9.7129 -2.6196 0.7602 38 1 10.2459 -3.4109 -1.4295 39 1 7.8480 -0.3609 -1.9150 40 1 9.4060 1.4735 -3.1277 41 1 7.9969 2.2852 -2.4039 42 1 11.6596 6.8951 -2.6369 43 1 1.8768 -2.1240 -0.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735253590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:53 Heat of formation + Delta-G solvation = -72.778190 kcal Electronic energy + Delta-G solvation = -26469.947269 eV Core-core repulsion = 22449.489882 eV Total energy + Delta-G solvation = -4020.457387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.44994 -39.83946 -38.90060 -37.19305 -35.34200 -33.58245 -32.97723 -32.42806 -30.80130 -29.42549 -28.40866 -27.27681 -25.62335 -25.47650 -22.57740 -21.62893 -20.40632 -20.29029 -19.73432 -18.29189 -17.84033 -17.57639 -16.57459 -16.29064 -16.02025 -15.75994 -15.30928 -15.06855 -14.90927 -14.80178 -14.43040 -14.24400 -13.95429 -13.73771 -13.39856 -13.34964 -13.14307 -12.90727 -12.86067 -12.62746 -12.38699 -12.28886 -12.23016 -11.71618 -11.40373 -11.04497 -11.03859 -10.77018 -10.18565 -9.97815 -9.82477 -9.42845 -9.16244 -9.06621 -8.94730 -8.84052 -8.56148 -8.24521 -6.50090 -6.21773 -3.92188 1.59625 2.20655 2.49511 2.98570 3.03562 3.23551 3.24909 3.28360 3.33721 3.50686 3.71000 4.15453 4.20677 4.32650 4.53593 4.64847 4.68281 4.70511 4.94218 4.96685 5.06567 5.12632 5.13460 5.20995 5.24877 5.30265 5.52658 5.60355 5.67348 5.68581 5.85893 5.89708 5.96325 6.15991 6.35571 6.50286 6.59578 6.75737 6.92994 7.47733 7.53245 7.59590 7.70257 8.27244 8.35220 8.57609 9.23676 10.85582 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008855 B = 0.002778 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.322122 B =10076.729457 C =12663.257681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.449 5.449 3 C -0.017 4.017 4 C -0.166 4.166 5 C -0.236 4.236 6 C 0.594 3.406 7 O -0.557 6.557 8 N -0.725 5.725 9 C 0.118 3.882 10 C 0.139 3.861 11 H 0.106 0.894 12 C 0.066 3.934 13 O -0.568 6.568 14 N -0.728 5.728 15 C 0.534 3.466 16 O -0.519 6.519 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.074 3.926 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.148 0.852 33 H 0.404 0.596 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.379 0.621 39 H 0.403 0.597 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.269 0.731 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.376 -15.734 5.560 24.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.124 5.124 3 C -0.143 4.143 4 C -0.190 4.190 5 C -0.246 4.246 6 C 0.383 3.617 7 O -0.437 6.437 8 N -0.377 5.377 9 C -0.006 4.006 10 C 0.033 3.967 11 H 0.124 0.876 12 C -0.014 4.014 13 O -0.374 6.374 14 N -0.383 5.383 15 C 0.320 3.680 16 O -0.394 6.394 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.062 4.062 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.185 0.815 32 H 0.165 0.835 33 H 0.239 0.761 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.226 0.774 39 H 0.237 0.763 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.164 -15.629 7.228 25.029 hybrid contribution -0.524 0.495 -2.465 2.568 sum -18.688 -15.134 4.763 24.515 Atomic orbital electron populations 1.22124 0.76867 1.04676 1.03623 1.43639 1.06807 1.05966 1.56003 1.21800 0.90584 0.91335 1.10579 1.22126 0.96443 0.93164 1.07247 1.20320 0.92483 0.93385 1.18457 1.17344 0.82282 0.86922 0.75175 1.90759 1.86691 1.14746 1.51526 1.45763 1.05217 1.10720 1.76013 1.21535 0.82526 0.92674 1.03834 1.21245 0.93410 0.89953 0.92061 0.87598 1.22557 0.98177 0.92744 0.87896 1.86454 1.48529 1.55972 1.46436 1.46021 1.52183 1.19952 1.20103 1.20353 0.78164 0.80926 0.88534 1.90701 1.40156 1.75347 1.33183 1.23533 1.06262 1.01655 0.98963 1.85355 1.60038 1.12388 1.25483 1.22831 1.35249 1.06916 1.03376 0.90978 1.24986 0.94503 0.96612 0.97447 1.70005 1.28819 1.19445 1.32085 0.86233 0.78431 0.78862 0.82032 1.19931 1.20836 1.19948 1.21758 0.89807 0.91727 1.02891 0.90595 0.89624 0.89507 0.81454 0.83456 0.76095 0.89682 0.90356 0.92071 0.92676 0.77378 0.76294 0.89184 0.89184 0.92144 0.80906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 11.03 59.85 0.66 0.90 16 2 N -0.45 -3.47 3.09 -124.53 -0.38 -3.86 16 3 C -0.02 -0.14 11.34 -16.83 -0.19 -0.33 16 4 C -0.17 -1.69 10.56 -37.50 -0.40 -2.08 16 5 C -0.24 -2.74 6.29 -103.35 -0.65 -3.39 16 6 C 0.59 7.88 7.81 -12.59 -0.10 7.78 16 7 O -0.56 -9.02 16.91 5.26 0.09 -8.93 16 8 N -0.73 -8.27 5.38 -61.44 -0.33 -8.60 16 9 C 0.12 1.31 5.12 -4.04 -0.02 1.29 16 10 C 0.14 1.61 2.53 -67.93 -0.17 1.43 16 11 H 0.11 1.30 7.57 -51.93 -0.39 0.91 16 12 C 0.07 0.70 6.85 37.16 0.25 0.95 16 13 O -0.57 -5.82 12.64 -35.23 -0.45 -6.26 16 14 N -0.73 -9.54 4.46 -53.81 -0.24 -9.78 16 15 C 0.53 9.46 7.82 -10.98 -0.09 9.37 16 16 O -0.52 -11.04 15.52 5.55 0.09 -10.96 16 17 C -0.15 -3.03 6.16 36.01 0.22 -2.80 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 23 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.07 0.72 11.12 -16.84 -0.19 0.53 16 28 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.19 8.13 -51.93 -0.42 -0.23 16 30 H 0.09 0.19 8.13 -51.93 -0.42 -0.24 16 31 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.15 1.37 7.70 -52.49 -0.40 0.97 16 33 H 0.40 4.32 7.26 -40.82 -0.30 4.02 16 34 H 0.08 1.04 7.39 -51.93 -0.38 0.66 16 35 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.38 2.36 9.12 45.56 0.42 2.78 16 39 H 0.40 4.74 8.60 -40.82 -0.35 4.39 16 40 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.17 1.43 8.06 -52.48 -0.42 1.00 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -38.04 389.27 -7.51 -45.55 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.18 Total: 8.91 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -0.47 Total: 0.83 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.22 Total: -47.47 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.27 Total: -26.15 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.04 -7.51 -45.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735253590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.229 kcal (2) G-P(sol) polarization free energy of solvation -38.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds