Wall clock time and date at job start Tue Mar 31 2020 23:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47035 * 119.99739 * 2 1 3 5 5 C 1.52997 * 109.47049 * 185.00124 * 4 2 1 6 6 H 1.09001 * 109.47289 * 305.00191 * 5 4 2 7 7 C 1.53006 * 109.47127 * 185.00237 * 5 4 2 8 8 N 1.46500 * 109.47473 * 64.99864 * 5 4 2 9 9 C 1.34770 * 120.00256 * 205.00145 * 8 5 4 10 10 O 1.21684 * 120.00380 * 359.97438 * 9 8 5 11 11 C 1.46722 * 120.00182 * 180.02562 * 9 8 5 12 12 C 1.36338 * 126.64741 * 179.97438 * 11 9 8 13 13 N 1.33695 * 107.45587 * 180.02562 * 12 11 9 14 14 C 1.30615 * 108.99464 * 359.97438 * 13 12 11 15 15 O 1.33665 * 109.15282 * 359.73287 * 14 13 12 16 16 N 1.46501 * 109.47050 * 239.99623 * 2 1 3 17 17 C 1.34770 * 119.99608 * 85.00330 * 16 2 1 18 18 O 1.21282 * 120.00534 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99953 * 180.02562 * 17 16 2 20 20 S 1.80998 * 109.47555 * 179.97438 * 19 17 16 21 21 C 1.76196 * 100.00282 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99969 * 0.02562 * 21 20 19 23 23 C 1.38797 * 120.00170 * 179.97438 * 21 20 19 24 24 N 1.31633 * 120.00015 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00247 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47440 * 89.99678 * 25 23 21 27 27 H 1.48500 * 109.47510 * 210.00215 * 25 23 21 28 28 H 1.48505 * 109.46928 * 330.00092 * 25 23 21 29 29 H 1.09000 * 109.46883 * 59.99999 * 1 2 3 30 30 H 1.08997 * 109.46835 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47061 * 300.00404 * 1 2 3 32 32 H 1.08998 * 109.47250 * 65.00006 * 4 2 1 33 33 H 1.08998 * 109.47252 * 304.99929 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 7 5 4 35 35 H 1.08993 * 109.46955 * 60.00011 * 7 5 4 36 36 H 1.09000 * 109.47050 * 179.97438 * 7 5 4 37 37 H 0.97005 * 119.99374 * 25.00210 * 8 5 4 38 38 H 1.08003 * 126.27317 * 0.03211 * 12 11 9 39 39 H 1.07999 * 125.42454 * 180.02562 * 14 13 12 40 40 H 0.97001 * 119.99978 * 264.99691 * 16 2 1 41 41 H 1.09005 * 109.46856 * 299.99544 * 19 17 16 42 42 H 1.09000 * 109.47463 * 59.99431 * 19 17 16 43 43 H 0.96998 * 120.00257 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 1 3.9954 -0.9922 0.3869 7 6 4.0851 -1.4382 2.4926 8 7 3.9480 0.7895 1.4924 9 6 5.1611 1.2136 1.0867 10 8 5.9385 0.4314 0.5723 11 6 5.5451 2.6182 1.2661 12 6 6.7300 3.1901 0.9086 13 7 6.6701 4.4820 1.2472 14 6 5.5083 4.7253 1.7923 15 8 4.7892 3.5987 1.8131 16 7 2.0183 -0.6907 -1.1961 17 6 2.1471 -0.0184 -2.3570 18 8 1.8582 1.1583 -2.4117 19 6 2.6488 -0.7289 -3.5877 20 16 2.7092 0.4339 -4.9734 21 6 3.3125 -0.6313 -6.2407 22 1 3.5218 -1.6677 -6.0207 23 6 3.5178 -0.1388 -7.5220 24 7 3.2622 1.1243 -7.7903 25 14 4.1566 -1.2682 -8.8656 26 1 3.0109 -1.9060 -9.5625 27 1 4.9511 -0.4782 -9.8402 28 1 5.0159 -2.3185 -8.2624 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7516 -1.7714 1.2057 33 1 1.6054 -0.2617 2.1370 34 1 3.6546 -1.0592 3.4195 35 1 3.8001 -2.4818 2.3596 36 1 5.1715 -1.3617 2.5382 37 1 3.3284 1.4129 1.9028 38 1 7.5641 2.6909 0.4379 39 1 5.1792 5.6850 2.1624 40 1 2.2491 -1.6319 -1.1525 41 1 3.6480 -1.1215 -3.3985 42 1 1.9760 -1.5508 -3.8325 43 1 3.4060 1.4687 -8.6856 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735554275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:08 Heat of formation + Delta-G solvation = -57.561159 kcal Electronic energy + Delta-G solvation = -27184.420065 eV Core-core repulsion = 23164.622538 eV Total energy + Delta-G solvation = -4019.797527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.68305 -40.20152 -39.25455 -37.04747 -35.29357 -34.69749 -32.40359 -32.15609 -31.27802 -30.20571 -28.53777 -27.12251 -25.45737 -24.69387 -23.03981 -22.16306 -21.36873 -20.95247 -20.23476 -18.86789 -17.82588 -17.18241 -17.09683 -16.74160 -16.33353 -15.99556 -15.13750 -14.86194 -14.77888 -14.67730 -14.51513 -14.29879 -14.00321 -13.70199 -13.66472 -13.18993 -12.96613 -12.76364 -12.61462 -12.44903 -12.34275 -11.95644 -11.78703 -11.61778 -11.22742 -11.16426 -11.04054 -11.00489 -10.99083 -10.73297 -10.50298 -9.79008 -9.57514 -9.37025 -9.28684 -9.04590 -8.90616 -8.21092 -6.46952 -6.19131 -3.89320 0.56136 2.13769 2.18738 2.83046 2.88934 3.05604 3.11803 3.24431 3.29922 3.34491 3.73152 3.85688 4.20959 4.23115 4.46293 4.57520 4.67467 4.77317 5.02461 5.09418 5.16075 5.18500 5.20241 5.21662 5.28210 5.30713 5.38346 5.45443 5.57394 5.66872 5.71154 5.86697 5.90619 5.91835 5.97057 6.10259 6.14690 6.17721 6.66357 6.99480 7.28362 7.62208 7.71436 7.76091 8.37897 8.63424 9.26295 10.88366 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009955 B = 0.003010 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.983679 B = 9300.743397 C =10720.853979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.087 0.913 4 C -0.136 4.136 5 C 0.139 3.861 6 H 0.097 0.903 7 C -0.164 4.164 8 N -0.712 5.712 9 C 0.612 3.388 10 O -0.508 6.508 11 C -0.109 4.109 12 C 0.056 3.944 13 N -0.493 5.493 14 C 0.201 3.799 15 O -0.193 6.193 16 N -0.734 5.734 17 C 0.534 3.466 18 O -0.518 6.518 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.404 0.596 38 H 0.198 0.802 39 H 0.257 0.743 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 -1.345 26.484 26.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.105 0.895 4 C -0.174 4.174 5 C 0.035 3.965 6 H 0.115 0.885 7 C -0.222 4.222 8 N -0.363 5.363 9 C 0.397 3.603 10 O -0.385 6.385 11 C -0.165 4.165 12 C -0.087 4.087 13 N -0.221 5.221 14 C -0.024 4.024 15 O -0.078 6.078 16 N -0.389 5.389 17 C 0.321 3.679 18 O -0.392 6.392 19 C -0.305 4.305 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.239 0.761 38 H 0.215 0.785 39 H 0.272 0.728 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.907 0.640 25.823 25.847 hybrid contribution -0.006 -2.516 -0.518 2.569 sum -0.913 -1.876 25.305 25.391 Atomic orbital electron populations 1.22186 0.95216 1.02126 1.02690 1.20877 0.94001 0.97732 0.83777 0.89488 1.22256 0.94020 1.02726 0.98395 1.21108 0.94672 0.80353 1.00355 0.88457 1.22192 1.02235 1.00017 0.97753 1.45912 1.16239 1.11827 1.62326 1.16301 0.82453 0.83242 0.78322 1.90928 1.51306 1.52908 1.43311 1.23186 0.93831 0.90475 1.08966 1.23656 0.97692 0.89112 0.98252 1.70469 1.20474 1.16038 1.15164 1.28435 0.85904 0.90992 0.97106 1.84480 1.43167 1.18331 1.61868 1.46083 1.69453 1.13809 1.09521 1.20289 0.76651 0.87210 0.83780 1.90690 1.48296 1.15758 1.84423 1.23538 1.03676 1.04843 0.98428 1.85366 1.86247 1.13028 0.98722 1.22868 1.50964 0.98144 0.96329 0.90948 1.24985 0.95095 0.95527 0.97948 1.70019 1.45659 1.13215 1.21455 0.86172 0.78828 0.79991 0.80547 1.20294 1.20742 1.19662 0.91561 0.92467 0.91991 0.89288 0.89713 0.92343 0.91187 0.91832 0.76119 0.78520 0.72766 0.76943 0.89255 0.89291 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.48 37.16 0.35 -1.24 16 2 C 0.14 1.46 2.52 -67.93 -0.17 1.29 16 3 H 0.09 1.11 7.06 -51.93 -0.37 0.74 16 4 C -0.14 -0.88 4.29 -26.73 -0.11 -1.00 16 5 C 0.14 1.17 2.52 -67.93 -0.17 1.00 16 6 H 0.10 1.07 7.05 -51.93 -0.37 0.70 16 7 C -0.16 -1.14 9.48 37.16 0.35 -0.79 16 8 N -0.71 -6.72 4.44 -55.10 -0.24 -6.97 16 9 C 0.61 7.71 7.75 -12.84 -0.10 7.61 16 10 O -0.51 -7.98 16.55 5.20 0.09 -7.90 16 11 C -0.11 -1.29 7.18 -36.84 -0.26 -1.55 16 12 C 0.06 0.67 11.66 -17.42 -0.20 0.46 16 13 N -0.49 -5.58 11.26 -14.67 -0.17 -5.75 16 14 C 0.20 1.61 13.21 52.24 0.69 2.30 16 15 O -0.19 -1.84 10.57 4.41 0.05 -1.79 16 16 N -0.73 -9.33 4.45 -53.80 -0.24 -9.57 16 17 C 0.53 9.94 7.81 -10.99 -0.09 9.86 16 18 O -0.52 -11.67 15.53 5.56 0.09 -11.58 16 19 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 21 C -0.53 -15.51 9.50 30.94 0.29 -15.22 16 22 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.56 13.22 55.49 0.73 -25.82 16 25 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.40 3.00 8.40 -40.82 -0.34 2.66 16 38 H 0.20 2.15 8.06 -52.48 -0.42 1.73 16 39 H 0.26 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.40 3.95 8.60 -40.82 -0.35 3.60 16 41 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 389.29 15.07 5.87 5.87 Total: -1.00 -38.85 389.29 -6.40 -45.26 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.04 Total: 3.59 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 0.70 Total: 1.80 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.08 Total: -48.11 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: 0.22 Total: -21.27 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.85 -6.40 -45.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735554275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.305 kcal (2) G-P(sol) polarization free energy of solvation -38.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds