Wall clock time and date at job start Tue Mar 31 2020 23:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47288 * 2 1 4 4 C 1.52999 * 109.47004 * 239.99511 * 2 1 3 5 5 C 1.52998 * 109.47023 * 175.00002 * 4 2 1 6 6 H 1.08999 * 109.47362 * 305.00112 * 5 4 2 7 7 C 1.53003 * 109.47079 * 184.99975 * 5 4 2 8 8 N 1.46506 * 109.47257 * 65.00368 * 5 4 2 9 9 C 1.34766 * 120.00100 * 204.99929 * 8 5 4 10 10 O 1.21290 * 120.00170 * 359.97438 * 9 8 5 11 11 C 1.50702 * 119.99870 * 179.97438 * 9 8 5 12 12 S 1.81006 * 109.46993 * 179.97438 * 11 9 8 13 13 C 1.76201 * 99.99881 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99956 * 359.97438 * 13 12 11 15 15 C 1.38803 * 119.99825 * 180.02562 * 13 12 11 16 16 N 1.31625 * 119.99562 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99889 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46933 * 90.00510 * 17 15 13 19 19 H 1.48503 * 109.46809 * 210.00138 * 17 15 13 20 20 H 1.48496 * 109.47563 * 330.00161 * 17 15 13 21 21 N 1.46500 * 109.47143 * 119.99891 * 2 1 3 22 22 C 1.34775 * 119.99835 * 274.99755 * 21 2 1 23 23 O 1.21684 * 120.00414 * 0.02562 * 22 21 2 24 24 C 1.46728 * 120.00065 * 179.97438 * 22 21 2 25 25 C 1.36337 * 126.64310 * 180.02562 * 24 22 21 26 26 N 1.33695 * 107.44987 * 179.97438 * 25 24 22 27 27 C 1.30620 * 108.99714 * 359.97438 * 26 25 24 28 28 O 1.33665 * 109.15088 * 0.27221 * 27 26 25 29 29 H 1.08995 * 109.46938 * 60.00240 * 1 2 3 30 30 H 1.09003 * 109.46979 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47191 * 300.00422 * 1 2 3 32 32 H 1.08998 * 109.47379 * 295.00163 * 4 2 1 33 33 H 1.09003 * 109.46946 * 55.00153 * 4 2 1 34 34 H 1.08998 * 109.46909 * 60.00439 * 7 5 4 35 35 H 1.09001 * 109.47059 * 179.97438 * 7 5 4 36 36 H 1.08999 * 109.47135 * 300.00276 * 7 5 4 37 37 H 0.97002 * 119.99571 * 25.00176 * 8 5 4 38 38 H 1.09001 * 109.47144 * 299.99677 * 11 9 8 39 39 H 1.08996 * 109.47466 * 60.00137 * 11 9 8 40 40 H 0.97008 * 119.99881 * 180.02562 * 16 15 13 41 41 H 0.97005 * 120.00211 * 94.99777 * 21 2 1 42 42 H 1.07996 * 126.27603 * 359.97438 * 25 24 22 43 43 H 1.08002 * 125.42040 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.8571 0.4357 -1.2678 7 6 4.0645 -1.2253 -2.6240 8 7 4.1537 -1.3343 -0.1823 9 6 5.3747 -0.9912 0.2734 10 8 5.9863 -0.0859 -0.2534 11 6 5.9802 -1.7324 1.4374 12 16 7.6124 -1.0434 1.8082 13 6 8.0742 -2.0652 3.1674 14 1 7.4024 -2.8352 3.5169 15 6 9.3010 -1.8797 3.7896 16 7 9.6462 -2.6434 4.8046 17 14 10.4627 -0.5474 3.1856 18 1 10.1838 0.7183 3.9104 19 1 11.8660 -0.9631 3.4371 20 1 10.2618 -0.3384 1.7292 21 7 2.0184 -0.6906 1.1962 22 6 2.1471 -0.0182 2.3571 23 8 1.8573 1.1624 2.4119 24 6 2.6357 -0.7099 3.5553 25 6 2.8165 -0.1657 4.7922 26 7 3.2726 -1.1339 5.5934 27 6 3.3778 -2.2399 4.9065 28 8 2.9983 -2.0107 3.6456 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.7516 -1.7716 -1.2055 33 1 1.6053 -0.2619 -2.1369 34 1 3.6264 -0.6889 -3.4657 35 1 5.1507 -1.1479 -2.6701 36 1 3.7722 -2.2743 -2.6698 37 1 3.6647 -2.0586 0.2387 38 1 5.3348 -1.6284 2.3097 39 1 6.0808 -2.7876 1.1837 40 1 10.5034 -2.5136 5.2398 41 1 2.2490 -1.6318 1.1527 42 1 2.6263 0.8596 5.0732 43 1 3.7218 -3.1874 5.2945 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735554276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:10 Heat of formation + Delta-G solvation = -48.811914 kcal Electronic energy + Delta-G solvation = -28400.668738 eV Core-core repulsion = 24381.250606 eV Total energy + Delta-G solvation = -4019.418131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.45966 -40.33203 -39.27538 -37.11149 -35.08221 -34.57322 -32.53422 -32.45128 -31.17224 -30.04684 -28.70170 -27.16290 -25.63241 -24.54007 -22.83652 -22.15813 -21.44854 -21.22765 -20.13449 -18.65327 -17.89535 -17.07483 -16.94050 -16.76418 -16.39571 -16.12853 -15.22224 -14.98786 -14.88079 -14.66181 -14.39880 -14.03785 -14.01882 -13.72204 -13.54261 -13.37005 -12.94526 -12.81976 -12.74337 -12.56785 -12.45500 -12.10484 -11.71986 -11.54061 -11.28784 -11.20696 -11.08095 -11.02032 -10.93725 -10.62293 -10.40212 -9.87812 -9.60616 -9.53896 -9.15924 -9.02375 -8.91835 -8.52649 -6.93949 -6.31295 -4.02716 0.74573 2.30883 2.42115 2.70562 2.89072 2.96740 2.99909 3.28751 3.33495 3.49160 3.61785 4.11514 4.17719 4.31654 4.47701 4.64728 4.71545 4.73734 4.87042 5.01941 5.06323 5.08557 5.20348 5.22859 5.29889 5.33261 5.41774 5.44002 5.50252 5.55433 5.66140 5.69257 5.86068 5.89850 5.92779 6.08511 6.10832 6.14866 6.51455 7.04031 7.50039 7.51501 7.80787 7.91560 8.37134 8.45057 9.15429 10.77860 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010474 B = 0.004476 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.600272 B = 6254.740686 C = 8186.024655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.095 0.905 4 C -0.135 4.135 5 C 0.142 3.858 6 H 0.091 0.909 7 C -0.163 4.163 8 N -0.730 5.730 9 C 0.532 3.468 10 O -0.515 6.515 11 C -0.122 4.122 12 S -0.139 6.139 13 C -0.520 4.520 14 H 0.087 0.913 15 C 0.098 3.902 16 N -0.879 5.879 17 Si 0.855 3.145 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.236 1.236 21 N -0.710 5.710 22 C 0.616 3.384 23 O -0.515 6.515 24 C -0.122 4.122 25 C 0.062 3.938 26 N -0.491 5.491 27 C 0.216 3.784 28 O -0.194 6.194 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.390 0.610 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.271 0.729 41 H 0.399 0.601 42 H 0.195 0.805 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.954 -1.185 -9.932 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.113 0.887 4 C -0.174 4.174 5 C 0.037 3.963 6 H 0.109 0.891 7 C -0.222 4.222 8 N -0.385 5.385 9 C 0.318 3.682 10 O -0.389 6.389 11 C -0.273 4.273 12 S 0.087 5.913 13 C -0.668 4.668 14 H 0.105 0.895 15 C -0.111 4.111 16 N -0.516 5.516 17 Si 0.679 3.321 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.160 1.160 21 N -0.363 5.363 22 C 0.402 3.598 23 O -0.391 6.391 24 C -0.178 4.178 25 C -0.081 4.081 26 N -0.219 5.219 27 C -0.009 4.009 28 O -0.081 6.081 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.225 0.775 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.235 0.765 42 H 0.212 0.788 43 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -19.852 1.137 -10.080 22.293 hybrid contribution -0.180 -1.662 0.277 1.695 sum -20.031 -0.525 -9.803 22.307 Atomic orbital electron populations 1.22190 0.94725 1.02311 1.02954 1.21082 0.94080 0.97999 0.83076 0.88678 1.22268 0.95071 1.01885 0.98132 1.20943 0.91282 0.98082 0.86003 0.89128 1.22177 1.02750 1.00803 0.96427 1.46160 1.19051 1.38241 1.35080 1.20239 0.80595 0.83452 0.83940 1.90704 1.60346 1.29588 1.58293 1.23255 1.02627 1.03160 0.98240 1.84841 1.13282 1.49527 1.43625 1.22262 1.07089 1.21075 1.16352 0.89541 1.24677 0.96954 0.95708 0.93763 1.69926 1.22511 1.38180 1.20959 0.86766 0.80668 0.82350 0.82279 1.19188 1.19896 1.15975 1.46029 1.67011 1.13917 1.09367 1.16285 0.77242 0.85522 0.80795 1.90892 1.50441 1.13961 1.83846 1.23037 1.13009 0.82931 0.98792 1.23611 0.96125 1.00447 0.87928 1.70487 1.17668 0.99416 1.34292 1.28505 0.95019 1.00507 0.76871 1.84454 1.62879 1.27155 1.33565 0.91254 0.92330 0.91809 0.90555 0.88358 0.91777 0.91613 0.92520 0.77484 0.89336 0.88642 0.91933 0.76451 0.78838 0.72684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.48 37.16 0.35 -0.74 16 2 C 0.14 1.14 2.57 -67.93 -0.17 0.97 16 3 H 0.10 0.99 7.58 -51.93 -0.39 0.60 16 4 C -0.14 -0.82 4.43 -26.73 -0.12 -0.94 16 5 C 0.14 1.37 2.57 -67.93 -0.17 1.19 16 6 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 7 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 8 N -0.73 -8.37 3.80 -53.80 -0.20 -8.57 16 9 C 0.53 9.12 7.81 -10.99 -0.09 9.04 16 10 O -0.52 -10.91 15.53 5.55 0.09 -10.82 16 11 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 12 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 13 C -0.52 -14.75 10.04 30.94 0.31 -14.44 16 14 H 0.09 2.53 8.03 -52.49 -0.42 2.11 16 15 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 16 N -0.88 -26.23 13.97 55.49 0.78 -25.45 16 17 Si 0.85 21.87 27.74 -169.99 -4.71 17.15 16 18 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 21 N -0.71 -6.69 3.80 -55.10 -0.21 -6.90 16 22 C 0.62 7.98 7.75 -12.83 -0.10 7.88 16 23 O -0.51 -8.08 16.55 5.20 0.09 -7.99 16 24 C -0.12 -1.62 7.18 -36.84 -0.26 -1.88 16 25 C 0.06 0.87 11.66 -17.43 -0.20 0.66 16 26 N -0.49 -7.11 11.26 -14.67 -0.17 -7.28 16 27 C 0.22 2.52 13.21 52.25 0.69 3.21 16 28 O -0.19 -2.27 10.57 4.42 0.05 -2.22 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.39 3.42 6.51 -40.82 -0.27 3.16 16 38 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 39 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 41 H 0.40 3.05 6.30 -40.82 -0.26 2.79 16 42 H 0.19 2.43 8.06 -52.49 -0.42 2.00 16 43 H 0.26 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -37.12 382.40 -5.78 -42.90 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.96 Total: 4.45 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 0.71 Total: 4.47 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.20 Total: -48.20 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.22 Total: -21.03 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.12 -5.78 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735554276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.911 kcal (2) G-P(sol) polarization free energy of solvation -37.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds