Wall clock time and date at job start Tue Mar 31 2020 23:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 H 1.09005 * 109.47604 * 305.00149 * 5 4 2 7 7 C 1.53000 * 109.47147 * 184.99925 * 5 4 2 8 8 N 1.46498 * 109.47002 * 65.00543 * 5 4 2 9 9 C 1.34785 * 119.99866 * 205.00367 * 8 5 4 10 10 O 1.21683 * 119.99608 * 359.97438 * 9 8 5 11 11 C 1.46718 * 120.00081 * 179.97438 * 9 8 5 12 12 C 1.36340 * 126.64667 * 179.97438 * 11 9 8 13 13 N 1.33694 * 107.45376 * 179.97438 * 12 11 9 14 14 C 1.30611 * 108.99639 * 0.02562 * 13 12 11 15 15 O 1.33665 * 109.15814 * 359.72614 * 14 13 12 16 16 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 17 17 C 1.34777 * 119.99828 * 274.72131 * 16 2 1 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 2 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 2 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46850 * 90.00589 * 25 23 21 27 27 H 1.48498 * 109.47329 * 210.00016 * 25 23 21 28 28 H 1.48499 * 109.47220 * 330.01003 * 25 23 21 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 32 32 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 33 33 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 34 34 H 1.09003 * 109.47231 * 60.00586 * 7 5 4 35 35 H 1.09008 * 109.47294 * 180.02562 * 7 5 4 36 36 H 1.08992 * 109.47249 * 300.00441 * 7 5 4 37 37 H 0.96994 * 120.00184 * 24.99578 * 8 5 4 38 38 H 1.08001 * 126.26957 * 0.03962 * 12 11 9 39 39 H 1.08004 * 125.42211 * 179.97438 * 14 13 12 40 40 H 0.97001 * 120.00384 * 95.00578 * 16 2 1 41 41 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 42 42 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 43 43 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 1 3.8570 0.4359 -1.2678 7 6 4.0644 -1.2250 -2.6240 8 7 4.1536 -1.3342 -0.1825 9 6 5.3747 -0.9910 0.2733 10 8 5.9882 -0.0826 -0.2551 11 6 5.9643 -1.7126 1.4066 12 6 7.1821 -1.4808 1.9742 13 7 7.3313 -2.3554 2.9743 14 6 6.2660 -3.1079 3.0436 15 8 5.4021 -2.7336 2.0948 16 7 2.0183 -0.6906 1.1962 17 6 2.1523 -0.0169 2.3557 18 8 1.8638 1.1599 2.4102 19 6 2.6605 -0.7257 3.5847 20 16 2.7270 0.4388 4.9688 21 6 3.3357 -0.6251 6.2346 22 1 3.5447 -1.6616 6.0147 23 6 3.5475 -0.1307 7.5142 24 7 3.2932 1.1328 7.7821 25 14 4.1921 -1.2586 8.8564 26 1 5.6767 -1.2203 8.8645 27 1 3.6782 -0.8047 10.1736 28 1 3.7342 -2.6474 8.5982 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2618 -2.1370 34 1 3.6263 -0.6887 -3.4658 35 1 5.1508 -1.1485 -2.6698 36 1 3.7722 -2.2741 -2.6699 37 1 3.6647 -2.0584 0.2386 38 1 7.8950 -0.7280 1.6719 39 1 6.1066 -3.9031 3.7568 40 1 2.2491 -1.6318 1.1526 41 1 1.9894 -1.5476 3.8337 42 1 3.6590 -1.1179 3.3911 43 1 3.4409 1.4781 8.6764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735554277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:13 Heat of formation + Delta-G solvation = -48.928256 kcal Electronic energy + Delta-G solvation = -28375.162793 eV Core-core repulsion = 24355.739617 eV Total energy + Delta-G solvation = -4019.423176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.47594 -40.28216 -39.18880 -37.04805 -35.08556 -34.52322 -32.47534 -32.43453 -31.11296 -30.03598 -28.56637 -27.11885 -25.50153 -24.54250 -22.85048 -22.09698 -21.39983 -21.18324 -20.05901 -18.64907 -17.86241 -17.05412 -16.94900 -16.74310 -16.29923 -16.07161 -15.14682 -14.82371 -14.80411 -14.63156 -14.42721 -14.11955 -13.96104 -13.66010 -13.55379 -13.21704 -12.96181 -12.72973 -12.68956 -12.41192 -12.36765 -11.98592 -11.65762 -11.55800 -11.16075 -11.07615 -11.04638 -11.02550 -10.95077 -10.78041 -10.39479 -9.83766 -9.56784 -9.41017 -9.15693 -9.08025 -8.84336 -8.25477 -6.51414 -6.22989 -3.93637 0.73885 2.30134 2.40326 2.86356 3.00650 3.04093 3.08378 3.21002 3.26850 3.29340 3.67279 4.08517 4.18403 4.21612 4.52253 4.66754 4.77650 4.86307 5.02439 5.09761 5.12403 5.15744 5.24924 5.33765 5.35919 5.40417 5.46258 5.48436 5.57200 5.63796 5.69534 5.82348 5.88601 5.97334 6.06350 6.09817 6.14679 6.17777 6.61042 7.06106 7.47889 7.56443 7.62431 7.82862 8.32591 8.58411 9.22125 10.84485 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.004331 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.735628 B = 6462.969379 C = 8419.525502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.135 4.135 5 C 0.141 3.859 6 H 0.096 0.904 7 C -0.163 4.163 8 N -0.710 5.710 9 C 0.615 3.385 10 O -0.514 6.514 11 C -0.118 4.118 12 C 0.061 3.939 13 N -0.491 5.491 14 C 0.211 3.789 15 O -0.194 6.194 16 N -0.732 5.732 17 C 0.533 3.467 18 O -0.513 6.513 19 C -0.151 4.151 20 S -0.057 6.057 21 C -0.534 4.534 22 H 0.070 0.930 23 C 0.075 3.925 24 N -0.867 5.867 25 Si 0.916 3.084 26 H -0.276 1.276 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.399 0.601 38 H 0.195 0.805 39 H 0.256 0.744 40 H 0.389 0.611 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.463 -11.289 -20.140 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.173 4.173 5 C 0.038 3.962 6 H 0.114 0.886 7 C -0.222 4.222 8 N -0.362 5.362 9 C 0.401 3.599 10 O -0.391 6.391 11 C -0.174 4.174 12 C -0.082 4.082 13 N -0.219 5.219 14 C -0.014 4.014 15 O -0.080 6.080 16 N -0.388 5.388 17 C 0.319 3.681 18 O -0.387 6.387 19 C -0.302 4.302 20 S 0.170 5.830 21 C -0.683 4.683 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.743 3.257 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.235 0.765 38 H 0.212 0.788 39 H 0.272 0.728 40 H 0.223 0.777 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.085 -8.588 -19.917 21.690 hybrid contribution 0.052 -2.932 0.837 3.049 sum -0.033 -11.519 -19.081 22.288 Atomic orbital electron populations 1.22176 0.95149 1.02006 1.02800 1.20926 0.94052 0.97873 0.83497 0.89141 1.22266 0.94057 1.02066 0.98946 1.21086 0.92203 0.97936 0.85021 0.88645 1.22189 1.02386 1.01072 0.96512 1.46023 1.17841 1.37695 1.34678 1.16282 0.81363 0.81949 0.80307 1.90894 1.61537 1.29038 1.57587 1.23065 0.97129 0.96007 1.01154 1.23606 0.95434 0.97998 0.91157 1.70468 1.25538 1.06843 1.19016 1.28442 0.82930 0.99148 0.90869 1.84457 1.44298 1.41127 1.38086 1.46197 1.69488 1.13220 1.09851 1.20272 0.76857 0.87256 0.83711 1.90705 1.48134 1.15650 1.84221 1.23506 1.03059 1.04895 0.98708 1.85445 1.86016 1.12775 0.98802 1.22807 1.51003 0.97972 0.96478 0.91143 1.24977 0.95057 0.95503 0.97919 1.70012 1.45364 1.13190 1.21613 0.86204 0.79137 0.80150 0.80241 1.20175 1.20732 1.19702 0.91834 0.92612 0.91573 0.90631 0.88407 0.91247 0.91829 0.92371 0.76462 0.78781 0.72827 0.77663 0.89437 0.90046 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.49 37.16 0.35 -1.22 16 2 C 0.14 1.45 2.58 -67.93 -0.17 1.28 16 3 H 0.09 1.18 7.57 -51.93 -0.39 0.79 16 4 C -0.14 -0.88 4.43 -26.73 -0.12 -1.00 16 5 C 0.14 1.20 2.57 -67.93 -0.17 1.02 16 6 H 0.10 1.04 7.58 -51.93 -0.39 0.64 16 7 C -0.16 -1.13 9.48 37.16 0.35 -0.78 16 8 N -0.71 -6.93 3.80 -55.10 -0.21 -7.14 16 9 C 0.62 8.15 7.75 -12.83 -0.10 8.05 16 10 O -0.51 -8.22 16.55 5.20 0.09 -8.13 16 11 C -0.12 -1.57 7.18 -36.84 -0.26 -1.84 16 12 C 0.06 0.85 11.66 -17.42 -0.20 0.65 16 13 N -0.49 -6.94 11.26 -14.67 -0.17 -7.10 16 14 C 0.21 2.37 13.21 52.24 0.69 3.06 16 15 O -0.19 -2.24 10.52 4.38 0.05 -2.19 16 16 N -0.73 -8.90 3.80 -53.81 -0.20 -9.10 16 17 C 0.53 9.66 7.82 -10.98 -0.09 9.57 16 18 O -0.51 -11.50 15.52 5.55 0.09 -11.41 16 19 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 20 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 21 C -0.53 -15.01 9.50 30.94 0.29 -14.72 16 22 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 25 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.40 3.18 6.30 -40.82 -0.26 2.92 16 38 H 0.20 2.44 8.06 -52.49 -0.42 2.01 16 39 H 0.26 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.39 3.64 6.51 -40.82 -0.27 3.37 16 41 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 42 H 0.08 1.55 8.09 -51.92 -0.42 1.13 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -37.73 384.99 -6.29 -44.02 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.92 Total: 4.90 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 0.69 Total: 3.33 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.16 Total: -48.75 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.22 Total: -21.74 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.73 -6.29 -44.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735554277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.906 kcal (2) G-P(sol) polarization free energy of solvation -37.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds