Wall clock time and date at job start Tue Mar 31 2020 23:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46696 * 2 1 4 4 C 1.52998 * 109.47453 * 120.00143 * 2 1 3 5 5 C 1.53003 * 109.47279 * 185.00099 * 4 2 1 6 6 H 1.09003 * 109.47098 * 304.99914 * 5 4 2 7 7 C 1.52994 * 109.46906 * 185.00043 * 5 4 2 8 8 N 1.46494 * 109.46913 * 64.99832 * 5 4 2 9 9 C 1.34773 * 120.00127 * 204.99969 * 8 5 4 10 10 O 1.21618 * 119.99809 * 0.02562 * 9 8 5 11 11 C 1.47424 * 120.00372 * 180.02562 * 9 8 5 12 12 C 1.36093 * 126.44911 * 179.97438 * 11 9 8 13 13 O 1.34258 * 106.94763 * 179.79372 * 12 11 9 14 14 C 1.34052 * 108.22703 * 0.37243 * 13 12 11 15 15 N 1.29935 * 109.24422 * 359.62175 * 14 13 12 16 16 N 1.46497 * 109.47111 * 240.00546 * 2 1 3 17 17 C 1.34777 * 120.00516 * 84.99799 * 16 2 1 18 18 O 1.21287 * 119.99436 * 359.97438 * 17 16 2 19 19 C 1.50699 * 120.00501 * 180.02562 * 17 16 2 20 20 S 1.81003 * 109.47317 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99842 * 179.97438 * 20 19 17 22 22 H 1.07993 * 119.99949 * 0.02562 * 21 20 19 23 23 C 1.38802 * 119.99526 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00040 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99690 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47354 * 90.00008 * 25 23 21 27 27 H 1.48497 * 109.47131 * 210.00369 * 25 23 21 28 28 H 1.48504 * 109.47501 * 330.00060 * 25 23 21 29 29 H 1.09001 * 109.47090 * 59.99960 * 1 2 3 30 30 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46903 * 299.99517 * 1 2 3 32 32 H 1.09000 * 109.46634 * 65.00261 * 4 2 1 33 33 H 1.09000 * 109.46882 * 305.00509 * 4 2 1 34 34 H 1.09003 * 109.47463 * 60.00247 * 7 5 4 35 35 H 1.09003 * 109.47098 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47446 * 300.00046 * 7 5 4 37 37 H 0.97007 * 120.00103 * 25.00635 * 8 5 4 38 38 H 1.07993 * 126.52576 * 0.04931 * 12 11 9 39 39 H 1.08002 * 125.38147 * 179.89383 * 14 13 12 40 40 H 0.97003 * 120.00079 * 264.99440 * 16 2 1 41 41 H 1.09002 * 109.46720 * 300.00004 * 19 17 16 42 42 H 1.09001 * 109.47323 * 59.99947 * 19 17 16 43 43 H 0.97004 * 119.99960 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5650 -0.6132 1.3136 6 1 3.9955 -0.9922 0.3867 7 6 4.0852 -1.4383 2.4923 8 7 3.9480 0.7894 1.4924 9 6 5.1611 1.2136 1.0866 10 8 5.9377 0.4321 0.5717 11 6 5.5469 2.6251 1.2670 12 6 6.7311 3.1918 0.9085 13 8 6.6622 4.4893 1.2464 14 6 5.4657 4.7134 1.8078 15 7 4.7860 3.6061 1.8239 16 7 2.0183 -0.6905 -1.1962 17 6 2.1471 -0.0181 -2.3572 18 8 1.8581 1.1586 -2.4116 19 6 2.6488 -0.7286 -3.5878 20 16 2.7106 0.4348 -4.9731 21 6 3.3136 -0.6304 -6.2405 22 1 3.5221 -1.6670 -6.0208 23 6 3.5197 -0.1374 -7.5216 24 7 3.2651 1.1259 -7.7894 25 14 4.1584 -1.2668 -8.8654 26 1 3.0125 -1.9036 -9.5630 27 1 4.9538 -0.4769 -9.8393 28 1 5.0167 -2.3179 -8.2623 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7518 -1.7715 1.2054 33 1 1.6054 -0.2618 2.1369 34 1 3.8003 -2.4819 2.3593 35 1 5.1716 -1.3617 2.5380 36 1 3.6547 -1.0594 3.4192 37 1 3.3284 1.4129 1.9028 38 1 7.5656 2.6936 0.4376 39 1 5.1194 5.6651 2.1830 40 1 2.2491 -1.6317 -1.1527 41 1 3.6480 -1.1211 -3.3987 42 1 1.9760 -1.5504 -3.8328 43 1 3.4095 1.4706 -8.6846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735558421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:19 Heat of formation + Delta-G solvation = -60.842234 kcal Electronic energy + Delta-G solvation = -27135.079011 eV Core-core repulsion = 23115.139206 eV Total energy + Delta-G solvation = -4019.939805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.66128 -40.06627 -39.16790 -36.92238 -35.12142 -34.63871 -32.39481 -31.85601 -31.05590 -30.34265 -28.49215 -27.03481 -25.44634 -24.73367 -23.03146 -22.04118 -21.21080 -20.76664 -20.14721 -18.77012 -17.79921 -16.97623 -16.85560 -16.56197 -16.26528 -15.91820 -15.37771 -14.91667 -14.80964 -14.76998 -14.36361 -14.15295 -13.93947 -13.77893 -13.58997 -13.13755 -12.89314 -12.68216 -12.55613 -12.35960 -12.27391 -11.90147 -11.67396 -11.48383 -11.17333 -11.09648 -11.03408 -10.98532 -10.90289 -10.72367 -10.32272 -9.77663 -9.47762 -9.31623 -9.20835 -9.03555 -8.83819 -8.19201 -6.45434 -6.18262 -3.88098 0.90143 1.79669 2.42048 2.91898 3.09220 3.17059 3.17556 3.24849 3.30474 3.35656 3.75232 3.78079 4.24022 4.31784 4.56257 4.59982 4.64905 4.88263 5.11731 5.16906 5.18289 5.24001 5.25327 5.30045 5.36994 5.38803 5.48067 5.53134 5.64181 5.71246 5.75175 5.85030 5.94948 5.96168 6.06205 6.19579 6.22376 6.29500 6.73339 7.07250 7.39449 7.63143 7.77643 8.01901 8.38874 8.69156 9.27135 10.89225 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.003010 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.227219 B = 9300.514726 C =10754.367742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.139 3.861 6 H 0.095 0.905 7 C -0.163 4.163 8 N -0.706 5.706 9 C 0.605 3.395 10 O -0.532 6.532 11 C -0.075 4.075 12 C 0.020 3.980 13 O -0.199 6.199 14 C 0.179 3.821 15 N -0.467 5.467 16 N -0.733 5.733 17 C 0.534 3.466 18 O -0.517 6.517 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.407 0.593 38 H 0.231 0.769 39 H 0.255 0.745 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.254 0.017 25.747 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.107 0.893 4 C -0.173 4.173 5 C 0.035 3.965 6 H 0.113 0.887 7 C -0.221 4.221 8 N -0.357 5.357 9 C 0.391 3.609 10 O -0.408 6.408 11 C -0.195 4.195 12 C -0.054 4.054 13 O -0.084 6.084 14 C -0.050 4.050 15 N -0.196 5.196 16 N -0.388 5.388 17 C 0.320 3.680 18 O -0.392 6.392 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.243 0.757 38 H 0.247 0.753 39 H 0.270 0.730 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.712 1.505 25.388 25.442 hybrid contribution 1.095 -2.053 -0.861 2.481 sum 1.807 -0.548 24.527 24.599 Atomic orbital electron populations 1.22184 0.95296 1.02028 1.02669 1.20880 0.93914 0.97853 0.83713 0.89337 1.22245 0.94216 1.02504 0.98383 1.21055 0.94493 0.80849 1.00111 0.88702 1.22183 1.02137 0.99894 0.97892 1.45788 1.16466 1.11345 1.62147 1.16712 0.82161 0.84370 0.77691 1.90850 1.51501 1.54699 1.43757 1.21773 0.93654 0.95851 1.08219 1.25365 1.00660 0.80412 0.98931 1.84455 1.37305 1.27396 1.59212 1.28112 0.79551 1.00129 0.97225 1.70725 1.31529 0.99166 1.18196 1.46076 1.69400 1.13766 1.09544 1.20274 0.76709 0.87213 0.83783 1.90692 1.48303 1.15740 1.84427 1.23535 1.03657 1.04806 0.98444 1.85364 1.86251 1.13018 0.98750 1.22877 1.50890 0.98138 0.96364 0.90958 1.24983 0.95121 0.95520 0.97938 1.70021 1.45713 1.13198 1.21442 0.86176 0.78829 0.79996 0.80556 1.20292 1.20763 1.19672 0.91624 0.92545 0.91968 0.89484 0.89750 0.91384 0.91958 0.92406 0.75702 0.75278 0.72953 0.77012 0.89296 0.89316 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 2 C 0.14 1.60 2.52 -67.93 -0.17 1.43 16 3 H 0.09 1.24 7.06 -51.93 -0.37 0.88 16 4 C -0.14 -1.03 4.29 -26.73 -0.11 -1.14 16 5 C 0.14 1.34 2.52 -67.94 -0.17 1.16 16 6 H 0.09 1.15 7.05 -51.93 -0.37 0.78 16 7 C -0.16 -1.30 9.48 37.15 0.35 -0.95 16 8 N -0.71 -7.74 4.44 -54.88 -0.24 -7.98 16 9 C 0.61 8.25 7.78 -12.52 -0.10 8.16 16 10 O -0.53 -8.71 16.55 5.26 0.09 -8.62 16 11 C -0.08 -0.92 6.99 -83.02 -0.58 -1.50 16 12 C 0.02 0.21 11.95 29.96 0.36 0.57 16 13 O -0.20 -1.80 10.73 6.50 0.07 -1.73 16 14 C 0.18 1.39 13.19 51.96 0.69 2.07 16 15 N -0.47 -5.06 11.06 -11.48 -0.13 -5.19 16 16 N -0.73 -9.88 4.45 -53.81 -0.24 -10.12 16 17 C 0.53 10.26 7.81 -10.99 -0.09 10.17 16 18 O -0.52 -12.00 15.53 5.55 0.09 -11.91 16 19 C -0.15 -3.23 6.16 36.01 0.22 -3.01 16 20 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 21 C -0.53 -15.58 9.50 30.94 0.29 -15.29 16 22 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 23 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.62 13.22 55.49 0.73 -25.88 16 25 Si 0.92 21.81 29.55 -169.99 -5.02 16.78 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.41 3.95 8.33 -40.82 -0.34 3.61 16 38 H 0.23 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.25 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.40 4.23 8.60 -40.82 -0.35 3.88 16 41 H 0.09 1.78 8.14 -51.91 -0.42 1.35 16 42 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 389.29 15.07 5.87 5.87 Total: -1.00 -39.03 389.29 -6.10 -45.12 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.04 Total: 5.23 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 0.95 Total: 2.34 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.12 Total: -49.18 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: 0.24 Total: -22.27 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.03 -6.10 -45.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735558421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.720 kcal (2) G-P(sol) polarization free energy of solvation -39.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds