Wall clock time and date at job start Tue Mar 31 2020 23:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46696 * 2 1 4 4 C 1.52998 * 109.47453 * 120.00143 * 2 1 3 5 5 C 1.53003 * 109.47279 * 185.00099 * 4 2 1 6 6 H 1.09003 * 109.47098 * 304.99914 * 5 4 2 7 7 C 1.52994 * 109.46906 * 185.00043 * 5 4 2 8 8 N 1.46494 * 109.46913 * 64.99832 * 5 4 2 9 9 C 1.34773 * 120.00127 * 204.99969 * 8 5 4 10 10 O 1.21618 * 119.99809 * 0.02562 * 9 8 5 11 11 C 1.47424 * 120.00372 * 180.02562 * 9 8 5 12 12 C 1.36093 * 126.44911 * 179.97438 * 11 9 8 13 13 O 1.34258 * 106.94763 * 179.79372 * 12 11 9 14 14 C 1.34052 * 108.22703 * 0.37243 * 13 12 11 15 15 N 1.29935 * 109.24422 * 359.62175 * 14 13 12 16 16 N 1.46497 * 109.47111 * 240.00546 * 2 1 3 17 17 C 1.34777 * 120.00516 * 84.99799 * 16 2 1 18 18 O 1.21287 * 119.99436 * 359.97438 * 17 16 2 19 19 C 1.50699 * 120.00501 * 180.02562 * 17 16 2 20 20 S 1.81003 * 109.47317 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99842 * 179.97438 * 20 19 17 22 22 H 1.07993 * 119.99949 * 0.02562 * 21 20 19 23 23 C 1.38802 * 119.99526 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00040 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99690 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47354 * 90.00008 * 25 23 21 27 27 H 1.48497 * 109.47131 * 210.00369 * 25 23 21 28 28 H 1.48504 * 109.47501 * 330.00060 * 25 23 21 29 29 H 1.09001 * 109.47090 * 59.99960 * 1 2 3 30 30 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46903 * 299.99517 * 1 2 3 32 32 H 1.09000 * 109.46634 * 65.00261 * 4 2 1 33 33 H 1.09000 * 109.46882 * 305.00509 * 4 2 1 34 34 H 1.09003 * 109.47463 * 60.00247 * 7 5 4 35 35 H 1.09003 * 109.47098 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47446 * 300.00046 * 7 5 4 37 37 H 0.97007 * 120.00103 * 25.00635 * 8 5 4 38 38 H 1.07993 * 126.52576 * 0.04931 * 12 11 9 39 39 H 1.08002 * 125.38147 * 179.89383 * 14 13 12 40 40 H 0.97003 * 120.00079 * 264.99440 * 16 2 1 41 41 H 1.09002 * 109.46720 * 300.00004 * 19 17 16 42 42 H 1.09001 * 109.47323 * 59.99947 * 19 17 16 43 43 H 0.97004 * 119.99960 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5650 -0.6132 1.3136 6 1 3.9955 -0.9922 0.3867 7 6 4.0852 -1.4383 2.4923 8 7 3.9480 0.7894 1.4924 9 6 5.1611 1.2136 1.0866 10 8 5.9377 0.4321 0.5717 11 6 5.5469 2.6251 1.2670 12 6 6.7311 3.1918 0.9085 13 8 6.6622 4.4893 1.2464 14 6 5.4657 4.7134 1.8078 15 7 4.7860 3.6061 1.8239 16 7 2.0183 -0.6905 -1.1962 17 6 2.1471 -0.0181 -2.3572 18 8 1.8581 1.1586 -2.4116 19 6 2.6488 -0.7286 -3.5878 20 16 2.7106 0.4348 -4.9731 21 6 3.3136 -0.6304 -6.2405 22 1 3.5221 -1.6670 -6.0208 23 6 3.5197 -0.1374 -7.5216 24 7 3.2651 1.1259 -7.7894 25 14 4.1584 -1.2668 -8.8654 26 1 3.0125 -1.9036 -9.5630 27 1 4.9538 -0.4769 -9.8393 28 1 5.0167 -2.3179 -8.2623 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7518 -1.7715 1.2054 33 1 1.6054 -0.2618 2.1369 34 1 3.8003 -2.4819 2.3593 35 1 5.1716 -1.3617 2.5380 36 1 3.6547 -1.0594 3.4192 37 1 3.3284 1.4129 1.9028 38 1 7.5656 2.6936 0.4376 39 1 5.1194 5.6651 2.1830 40 1 2.2491 -1.6317 -1.1527 41 1 3.6480 -1.1211 -3.3987 42 1 1.9760 -1.5504 -3.8328 43 1 3.4095 1.4706 -8.6846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735558421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:19 Heat of formation + Delta-G solvation = -93.387908 kcal Electronic energy + Delta-G solvation = -27136.490297 eV Core-core repulsion = 23115.139206 eV Total energy + Delta-G solvation = -4021.351091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.40302 -41.12940 -40.47366 -37.99820 -35.95150 -35.71294 -34.60557 -33.01942 -32.03440 -31.13543 -29.98813 -27.76737 -27.67197 -25.58610 -23.72910 -23.03747 -22.12298 -21.78914 -21.33046 -19.89992 -19.53895 -17.97640 -17.73708 -17.58808 -17.51249 -17.02056 -16.89764 -16.40554 -16.07563 -15.95552 -15.73022 -15.26114 -14.97823 -14.80499 -14.62991 -14.50376 -14.43336 -13.74196 -13.63479 -13.30283 -13.18847 -13.09335 -12.97385 -12.90183 -12.62311 -12.49467 -12.39369 -11.98267 -11.91234 -11.75729 -11.71774 -11.34420 -11.15953 -10.91421 -10.34498 -10.30796 -10.10074 -10.03973 -8.68856 -8.36500 -6.14831 0.07463 1.04972 1.25437 1.40917 1.45219 1.56441 1.62703 1.70703 2.11044 2.23736 2.25183 2.32240 2.97490 3.08926 3.30567 3.53888 3.77738 3.83931 3.88577 4.00189 4.13546 4.25767 4.36186 4.44822 4.46582 4.50064 4.51000 4.61108 4.71826 4.76325 4.83110 4.91395 5.06332 5.13338 5.17197 5.29244 5.34645 5.39488 5.43364 5.59641 6.17826 6.25813 6.52284 6.56235 7.04508 7.07253 7.27313 8.72938 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.003010 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.227219 B = 9300.514726 C =10754.367742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 H 0.058 0.942 4 C -0.119 4.119 5 C 0.133 3.867 6 H 0.067 0.933 7 C -0.154 4.154 8 N -0.697 5.697 9 C 0.595 3.405 10 O -0.572 6.572 11 C -0.106 4.106 12 C 0.019 3.981 13 O -0.199 6.199 14 C 0.197 3.803 15 N -0.494 5.494 16 N -0.708 5.708 17 C 0.534 3.466 18 O -0.565 6.565 19 C -0.131 4.131 20 S -0.150 6.150 21 C -0.548 4.548 22 H 0.081 0.919 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.266 1.266 27 H -0.276 1.276 28 H -0.259 1.259 29 H 0.027 0.973 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.414 0.586 38 H 0.244 0.756 39 H 0.304 0.696 40 H 0.413 0.587 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.765 -1.697 27.540 27.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.077 0.923 4 C -0.157 4.157 5 C 0.030 3.970 6 H 0.085 0.915 7 C -0.212 4.212 8 N -0.348 5.348 9 C 0.381 3.619 10 O -0.452 6.452 11 C -0.225 4.225 12 C -0.055 4.055 13 O -0.084 6.084 14 C -0.032 4.032 15 N -0.224 5.224 16 N -0.362 5.362 17 C 0.320 3.680 18 O -0.443 6.443 19 C -0.282 4.282 20 S 0.077 5.923 21 C -0.696 4.696 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.191 1.191 27 H -0.201 1.201 28 H -0.183 1.183 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.250 0.750 38 H 0.260 0.740 39 H 0.318 0.682 40 H 0.250 0.750 41 H 0.118 0.882 42 H 0.128 0.872 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.183 -0.260 27.249 27.251 hybrid contribution 1.205 -1.464 -1.265 2.279 sum 1.387 -1.724 25.984 26.079 Atomic orbital electron populations 1.22131 0.94113 1.03201 1.02110 1.21087 0.94751 0.96761 0.84040 0.92336 1.22225 0.92302 1.04107 0.97088 1.21199 0.95888 0.80186 0.99760 0.91465 1.22108 1.00555 1.00878 0.97694 1.45838 1.15669 1.12196 1.61065 1.17049 0.82568 0.84887 0.77362 1.90807 1.52726 1.55849 1.45839 1.21805 0.94856 0.95808 1.10014 1.25659 1.00596 0.80862 0.98421 1.84484 1.37948 1.26657 1.59292 1.29265 0.78364 1.00868 0.94692 1.70691 1.32275 0.99819 1.19568 1.45873 1.67396 1.14423 1.08482 1.20001 0.76671 0.86600 0.84770 1.90677 1.50770 1.17672 1.85227 1.23383 1.05059 1.03331 0.96446 1.85525 1.86649 1.17427 1.02692 1.23205 1.51131 0.98391 0.96877 0.90096 1.26134 0.94985 0.97238 1.00704 1.70185 1.46835 1.15465 1.22273 0.84947 0.78489 0.77729 0.76777 1.19070 1.20146 1.18335 0.95409 0.90422 0.89354 0.86391 0.86808 0.89244 0.94390 0.90704 0.74969 0.74031 0.68172 0.74962 0.88172 0.87153 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.48 71.98 0.68 -2.32 16 2 C 0.14 2.92 2.52 44.99 0.11 3.03 16 3 H 0.06 1.65 7.06 -2.38 -0.02 1.63 16 4 C -0.12 -1.42 4.29 30.59 0.13 -1.29 16 5 C 0.13 2.38 2.52 44.99 0.11 2.49 16 6 H 0.07 1.60 7.05 -2.39 -0.02 1.58 16 7 C -0.15 -2.15 9.48 71.98 0.68 -1.47 16 8 N -0.70 -15.24 4.44 -445.81 -1.98 -17.22 16 9 C 0.59 16.93 7.78 86.66 0.67 17.61 16 10 O -0.57 -19.81 16.55 -4.09 -0.07 -19.88 16 11 C -0.11 -2.69 6.99 40.41 0.28 -2.41 16 12 C 0.02 0.41 11.95 67.32 0.80 1.21 16 13 O -0.20 -3.45 10.73 0.35 0.00 -3.45 16 14 C 0.20 2.77 13.19 130.52 1.72 4.49 16 15 N -0.49 -10.56 11.06 -305.14 -3.37 -13.94 16 16 N -0.71 -18.35 4.45 -442.53 -1.97 -20.32 16 17 C 0.53 20.81 7.81 87.66 0.68 21.49 16 18 O -0.57 -27.35 15.53 -3.05 -0.05 -27.40 16 19 C -0.13 -5.54 6.16 71.24 0.44 -5.10 16 20 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 21 C -0.55 -32.41 9.50 67.95 0.65 -31.76 16 22 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 23 C 0.01 0.82 5.49 84.86 0.47 1.29 16 24 N -0.91 -57.20 13.22 21.65 0.29 -56.91 16 25 Si 1.00 44.69 29.55 68.60 2.03 46.72 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 29 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 32 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.41 7.83 8.33 -92.70 -0.77 7.06 16 38 H 0.24 4.13 8.06 -2.91 -0.02 4.10 16 39 H 0.30 0.53 8.06 -2.91 -0.02 0.51 16 40 H 0.41 7.92 8.60 -92.71 -0.80 7.12 16 41 H 0.10 3.99 8.14 -2.39 -0.02 3.98 16 42 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 43 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -91.22 389.29 0.64 -90.58 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -0.52 Total: 24.40 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 7.44 Total: 7.27 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -7.04 Total: -108.39 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -0.11 Total: -50.73 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -91.22 0.64 -90.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735558421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.808 kcal (2) G-P(sol) polarization free energy of solvation -91.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds