Wall clock time and date at job start Tue Mar 31 2020 23:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.53003 * 109.46992 * 174.99670 * 4 2 1 6 6 H 1.08997 * 109.47184 * 304.99763 * 5 4 2 7 7 C 1.53004 * 109.47006 * 185.00314 * 5 4 2 8 8 N 1.46503 * 109.46950 * 65.00161 * 5 4 2 9 9 C 1.34777 * 119.99650 * 204.99748 * 8 5 4 10 10 O 1.21277 * 120.00328 * 0.02562 * 9 8 5 11 11 C 1.50701 * 119.99544 * 180.02562 * 9 8 5 12 12 S 1.80992 * 109.46958 * 180.02562 * 11 9 8 13 13 C 1.76202 * 100.00080 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99895 * 359.97438 * 13 12 11 15 15 C 1.38804 * 120.00111 * 180.02562 * 13 12 11 16 16 N 1.31626 * 120.00042 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99858 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47324 * 89.99961 * 17 15 13 19 19 H 1.48502 * 109.46684 * 209.99994 * 17 15 13 20 20 H 1.48497 * 109.47117 * 329.99415 * 17 15 13 21 21 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 22 22 C 1.34773 * 119.99909 * 275.00159 * 21 2 1 23 23 O 1.21617 * 120.00428 * 0.02562 * 22 21 2 24 24 C 1.47422 * 119.99953 * 180.02562 * 22 21 2 25 25 C 1.36089 * 126.45050 * 180.02562 * 24 22 21 26 26 O 1.34256 * 106.95377 * 179.97438 * 25 24 22 27 27 C 1.34054 * 108.22593 * 359.97438 * 26 25 24 28 28 N 1.29939 * 109.23724 * 359.72501 * 27 26 25 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 33 33 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 34 34 H 1.09000 * 109.46797 * 180.02562 * 7 5 4 35 35 H 1.09006 * 109.46751 * 299.99598 * 7 5 4 36 36 H 1.08995 * 109.47371 * 60.00309 * 7 5 4 37 37 H 0.96994 * 119.99716 * 25.00238 * 8 5 4 38 38 H 1.09002 * 109.47404 * 300.00223 * 11 9 8 39 39 H 1.09002 * 109.47313 * 59.99847 * 11 9 8 40 40 H 0.97001 * 120.00573 * 180.02562 * 16 15 13 41 41 H 0.97003 * 119.99825 * 95.00368 * 21 2 1 42 42 H 1.08006 * 126.52603 * 0.02562 * 25 24 22 43 43 H 1.07994 * 125.38103 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 1 3.8571 0.4360 -1.2678 7 6 4.0646 -1.2247 -2.6241 8 7 4.1538 -1.3341 -0.1824 9 6 5.3749 -0.9909 0.2733 10 8 5.9860 -0.0850 -0.2528 11 6 5.9808 -1.7329 1.4366 12 16 7.6121 -1.0428 1.8085 13 6 8.0747 -2.0657 3.1666 14 1 7.4036 -2.8369 3.5150 15 6 9.3012 -1.8798 3.7893 16 7 10.1190 -0.9396 3.3651 17 14 9.7919 -2.9648 5.2286 18 1 10.5100 -4.1624 4.7235 19 1 10.6811 -2.2030 6.1420 20 1 8.5747 -3.3912 5.9646 21 7 2.0184 -0.6906 1.1961 22 6 2.1470 -0.0184 2.3571 23 8 1.8573 1.1615 2.4119 24 6 2.6389 -0.7132 3.5606 25 6 2.8180 -0.1660 4.7937 26 8 3.2769 -1.1427 5.5925 27 6 3.3771 -2.2654 4.8669 28 7 2.9924 -2.0241 3.6495 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.7517 -1.7715 -1.2057 33 1 1.6055 -0.2616 -2.1370 34 1 5.1509 -1.1481 -2.6698 35 1 3.7724 -2.2739 -2.6700 36 1 3.6265 -0.6883 -3.4658 37 1 3.6649 -2.0584 0.2385 38 1 5.3356 -1.6300 2.3091 39 1 6.0817 -2.7879 1.1818 40 1 10.9763 -0.8099 3.8000 41 1 2.2491 -1.6318 1.1525 42 1 2.6266 0.8587 5.0763 43 1 3.7194 -3.2205 5.2368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735558422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:22 Heat of formation + Delta-G solvation = -52.191037 kcal Electronic energy + Delta-G solvation = -28307.818566 eV Core-core repulsion = 24288.253905 eV Total energy + Delta-G solvation = -4019.564661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.44966 -40.15170 -39.06772 -36.91976 -34.92274 -34.45783 -32.42674 -32.18017 -30.83881 -30.14689 -28.46450 -27.03502 -25.47769 -24.59393 -22.83714 -21.97936 -21.24489 -20.98460 -19.92009 -18.54288 -17.81558 -16.86017 -16.73592 -16.51774 -16.19147 -15.95962 -15.21420 -14.98563 -14.81099 -14.69395 -14.24891 -14.09823 -13.81466 -13.64509 -13.58822 -13.12936 -12.88241 -12.66989 -12.56840 -12.32982 -12.28587 -11.90156 -11.61871 -11.35639 -11.08222 -11.07314 -11.01751 -10.93644 -10.92822 -10.76341 -10.25248 -9.80618 -9.39687 -9.31021 -9.16470 -9.06455 -8.72517 -8.20462 -6.47698 -6.21106 -3.90793 1.08650 1.98564 2.62304 2.95739 3.09836 3.17601 3.20591 3.27068 3.28957 3.30758 3.75476 3.95588 4.20384 4.31907 4.62892 4.74324 4.77415 4.88762 5.12512 5.13897 5.18477 5.24822 5.33074 5.41250 5.45045 5.47911 5.54068 5.54810 5.64289 5.71205 5.77207 5.94036 5.96753 6.01287 6.06312 6.20182 6.23069 6.34658 6.72331 7.20492 7.49393 7.58795 7.74538 8.07717 8.35096 8.68892 9.23777 10.86383 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.004328 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.210783 B = 6468.493167 C = 8460.243345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.093 0.907 4 C -0.135 4.135 5 C 0.142 3.858 6 H 0.089 0.911 7 C -0.163 4.163 8 N -0.730 5.730 9 C 0.534 3.466 10 O -0.518 6.518 11 C -0.150 4.150 12 S -0.061 6.061 13 C -0.532 4.532 14 H 0.071 0.929 15 C 0.074 3.926 16 N -0.867 5.867 17 Si 0.917 3.083 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.273 1.273 21 N -0.704 5.704 22 C 0.609 3.391 23 O -0.537 6.537 24 C -0.079 4.079 25 C 0.021 3.979 26 O -0.195 6.195 27 C 0.189 3.811 28 N -0.469 5.469 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.391 0.609 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.268 0.732 41 H 0.403 0.597 42 H 0.228 0.772 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.336 -3.766 -3.675 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.111 0.889 4 C -0.173 4.173 5 C 0.037 3.963 6 H 0.107 0.893 7 C -0.221 4.221 8 N -0.385 5.385 9 C 0.320 3.680 10 O -0.392 6.392 11 C -0.300 4.300 12 S 0.165 5.835 13 C -0.680 4.680 14 H 0.089 0.911 15 C -0.135 4.135 16 N -0.503 5.503 17 Si 0.743 3.257 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.198 1.198 21 N -0.357 5.357 22 C 0.395 3.605 23 O -0.414 6.414 24 C -0.198 4.198 25 C -0.054 4.054 26 O -0.080 6.080 27 C -0.040 4.040 28 N -0.198 5.198 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.226 0.774 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.240 0.760 42 H 0.244 0.756 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -20.368 -1.751 -4.993 21.044 hybrid contribution -0.323 -2.239 2.266 3.202 sum -20.690 -3.990 -2.727 21.247 Atomic orbital electron populations 1.22180 0.94984 1.02168 1.02730 1.21042 0.93893 0.97977 0.83401 0.88900 1.22259 0.95200 1.01793 0.98074 1.20909 0.91212 0.98075 0.86129 0.89273 1.22179 1.02751 1.00713 0.96483 1.46183 1.19159 1.38279 1.34927 1.20263 0.80442 0.83386 0.83861 1.90692 1.60458 1.29692 1.58368 1.23502 1.05271 1.02999 0.98259 1.85406 1.09118 1.46975 1.41973 1.22824 1.05867 1.21088 1.18244 0.91129 1.24978 0.95378 0.95658 0.97530 1.70016 1.09337 1.30572 1.40338 0.86203 0.78509 0.79916 0.81060 1.20286 1.20789 1.19751 1.45897 1.66595 1.14160 1.09007 1.16705 0.76783 0.85409 0.81651 1.90819 1.50977 1.14774 1.84783 1.21688 1.10868 0.91291 0.96001 1.25277 0.96906 0.94356 0.88820 1.84462 1.63203 1.19015 1.41314 1.28089 0.99209 0.91397 0.85284 1.70678 1.15194 1.14113 1.19821 0.92424 0.91948 0.91439 0.90671 0.88583 0.91612 0.92621 0.91903 0.77362 0.89437 0.89568 0.92225 0.75999 0.75585 0.73068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.48 37.16 0.35 -0.94 16 2 C 0.14 1.35 2.57 -67.93 -0.17 1.18 16 3 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 4 C -0.13 -1.02 4.43 -26.73 -0.12 -1.14 16 5 C 0.14 1.60 2.57 -67.93 -0.17 1.42 16 6 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 7 C -0.16 -1.71 9.48 37.16 0.35 -1.35 16 8 N -0.73 -9.74 3.80 -53.80 -0.20 -9.95 16 9 C 0.53 10.19 7.81 -10.98 -0.09 10.10 16 10 O -0.52 -11.98 15.52 5.56 0.09 -11.90 16 11 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 12 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 13 C -0.53 -15.03 9.50 30.94 0.29 -14.74 16 14 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 15 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 16 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 17 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 N -0.70 -7.84 3.80 -54.88 -0.21 -8.05 16 22 C 0.61 8.60 7.78 -12.52 -0.10 8.50 16 23 O -0.54 -8.91 16.55 5.26 0.09 -8.82 16 24 C -0.08 -1.07 6.99 -83.02 -0.58 -1.65 16 25 C 0.02 0.26 11.94 29.96 0.36 0.61 16 26 O -0.20 -2.33 10.73 6.50 0.07 -2.26 16 27 C 0.19 2.06 13.19 51.96 0.69 2.74 16 28 N -0.47 -5.87 10.96 -11.48 -0.13 -5.99 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.39 4.32 6.51 -40.82 -0.27 4.05 16 38 H 0.09 1.75 8.05 -51.91 -0.42 1.34 16 39 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.40 4.02 6.24 -40.82 -0.25 3.76 16 42 H 0.23 2.18 8.06 -52.48 -0.42 1.76 16 43 H 0.25 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -37.47 384.91 -5.98 -43.45 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.92 Total: 7.10 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 0.94 Total: 3.85 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.19 Total: -49.44 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.24 Total: -22.98 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.47 -5.98 -43.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735558422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.745 kcal (2) G-P(sol) polarization free energy of solvation -37.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds