Wall clock time and date at job start Tue Mar 31 2020 23:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47416 * 2 1 4 4 C 1.53000 * 109.47119 * 239.99839 * 2 1 3 5 5 C 1.52995 * 109.47152 * 175.00325 * 4 2 1 6 6 H 1.09002 * 109.46830 * 304.99846 * 5 4 2 7 7 C 1.53000 * 109.47187 * 185.00354 * 5 4 2 8 8 N 1.46496 * 109.47630 * 64.99994 * 5 4 2 9 9 C 1.34777 * 120.00258 * 205.00405 * 8 5 4 10 10 O 1.21610 * 120.00257 * 359.97438 * 9 8 5 11 11 C 1.47426 * 119.99972 * 179.97438 * 9 8 5 12 12 C 1.36090 * 126.44687 * 179.97438 * 11 9 8 13 13 O 1.34256 * 106.94517 * 180.02562 * 12 11 9 14 14 C 1.34042 * 108.22978 * 0.02562 * 13 12 11 15 15 N 1.29933 * 109.24630 * 359.71742 * 14 13 12 16 16 N 1.46503 * 109.47081 * 120.00147 * 2 1 3 17 17 C 1.34781 * 119.99876 * 275.00170 * 16 2 1 18 18 O 1.21280 * 119.99856 * 359.97438 * 17 16 2 19 19 C 1.50699 * 119.99942 * 180.02562 * 17 16 2 20 20 S 1.81005 * 109.46757 * 179.97438 * 19 17 16 21 21 C 1.76207 * 99.99571 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00202 * 359.97438 * 21 20 19 23 23 C 1.38794 * 119.99690 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00303 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 120.00096 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46715 * 59.99940 * 25 23 21 27 27 H 1.48490 * 109.47169 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.46998 * 300.00287 * 25 23 21 29 29 H 1.09001 * 109.47416 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47230 * 300.00161 * 1 2 3 31 31 H 1.08996 * 109.47002 * 59.99912 * 1 2 3 32 32 H 1.08994 * 109.46979 * 54.99699 * 4 2 1 33 33 H 1.09003 * 109.47135 * 295.00261 * 4 2 1 34 34 H 1.09002 * 109.46821 * 299.99498 * 7 5 4 35 35 H 1.08992 * 109.47302 * 59.99702 * 7 5 4 36 36 H 1.09006 * 109.47229 * 180.02562 * 7 5 4 37 37 H 0.96999 * 119.99694 * 24.99795 * 8 5 4 38 38 H 1.07998 * 126.52864 * 0.02562 * 12 11 9 39 39 H 1.08002 * 125.38052 * 180.02562 * 14 13 12 40 40 H 0.96995 * 120.00445 * 94.99912 * 16 2 1 41 41 H 1.09000 * 109.47245 * 299.99330 * 19 17 16 42 42 H 1.09001 * 109.47237 * 59.99702 * 19 17 16 43 43 H 0.96998 * 120.00211 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2251 -2.6240 8 7 4.1537 -1.3343 -0.1824 9 6 5.3747 -0.9911 0.2734 10 8 5.9879 -0.0834 -0.2547 11 6 5.9671 -1.7162 1.4121 12 6 7.1834 -1.4815 1.9756 13 8 7.3271 -2.3633 2.9777 14 6 6.2242 -3.1233 3.0289 15 7 5.3986 -2.7431 2.1004 16 7 2.0183 -0.6907 1.1962 17 6 2.1470 -0.0183 2.3572 18 8 1.8590 1.1586 2.4115 19 6 2.6499 -0.7286 3.5875 20 16 2.7112 0.4347 4.9729 21 6 3.3142 -0.6306 6.2403 22 1 3.5229 -1.6672 6.0205 23 6 3.5201 -0.1378 7.5214 24 7 3.2653 1.1255 7.7894 25 14 4.1587 -1.2673 8.8653 26 1 5.4853 -1.8056 8.4705 27 1 4.2919 -0.5037 10.1318 28 1 3.2072 -2.3904 9.0615 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6053 -0.2618 -2.1369 33 1 1.7516 -1.7716 -1.2056 34 1 3.7722 -2.2742 -2.6699 35 1 3.6264 -0.6887 -3.4656 36 1 5.1509 -1.1486 -2.6697 37 1 3.6647 -2.0585 0.2386 38 1 7.8972 -0.7292 1.6740 39 1 6.0474 -3.9221 3.7340 40 1 2.2490 -1.6318 1.1527 41 1 1.9776 -1.5508 3.8326 42 1 3.6492 -1.1204 3.3979 43 1 3.4096 1.4700 8.6846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735558423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:25 Heat of formation + Delta-G solvation = -52.101634 kcal Electronic energy + Delta-G solvation = -28309.084881 eV Core-core repulsion = 24289.524097 eV Total energy + Delta-G solvation = -4019.560784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.45131 -40.15182 -39.06711 -36.92002 -34.92338 -34.45755 -32.42444 -32.17959 -30.83882 -30.14730 -28.46296 -27.03495 -25.47534 -24.59437 -22.83737 -21.97892 -21.24480 -20.98418 -19.91943 -18.54328 -17.81298 -16.85896 -16.73727 -16.51900 -16.18978 -15.95899 -15.21319 -14.98772 -14.80916 -14.69322 -14.24751 -14.09570 -13.81312 -13.64620 -13.58870 -13.12849 -12.88121 -12.66836 -12.56820 -12.32996 -12.28515 -11.90038 -11.61853 -11.35331 -11.08459 -11.05030 -11.03372 -10.93644 -10.92806 -10.76793 -10.25263 -9.81221 -9.39685 -9.30906 -9.16541 -9.05638 -8.72439 -8.20746 -6.47552 -6.20733 -3.90598 1.08617 1.98539 2.62345 2.95705 3.09903 3.17736 3.21330 3.26627 3.28951 3.30599 3.75576 3.95561 4.20700 4.31919 4.62917 4.74299 4.77397 4.88790 5.12606 5.14079 5.18478 5.24914 5.33149 5.41261 5.45070 5.47935 5.54084 5.54801 5.64346 5.71312 5.77174 5.94211 5.96769 6.01309 6.06373 6.20390 6.23152 6.34698 6.72452 7.20510 7.49399 7.58685 7.74619 8.07733 8.35143 8.68992 9.23973 10.86690 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.004328 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.971004 B = 6468.086750 C = 8459.072589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.141 3.859 6 H 0.093 0.907 7 C -0.162 4.162 8 N -0.704 5.704 9 C 0.609 3.391 10 O -0.537 6.537 11 C -0.079 4.079 12 C 0.021 3.979 13 O -0.195 6.195 14 C 0.189 3.811 15 N -0.468 5.468 16 N -0.730 5.730 17 C 0.534 3.466 18 O -0.518 6.518 19 C -0.150 4.150 20 S -0.061 6.061 21 C -0.532 4.532 22 H 0.070 0.930 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.916 3.084 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.403 0.597 38 H 0.228 0.772 39 H 0.254 0.746 40 H 0.391 0.609 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 -10.905 -18.951 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.173 4.173 5 C 0.037 3.963 6 H 0.111 0.889 7 C -0.221 4.221 8 N -0.357 5.357 9 C 0.395 3.605 10 O -0.413 6.413 11 C -0.199 4.199 12 C -0.053 4.053 13 O -0.080 6.080 14 C -0.040 4.040 15 N -0.198 5.198 16 N -0.385 5.385 17 C 0.320 3.680 18 O -0.392 6.392 19 C -0.300 4.300 20 S 0.165 5.835 21 C -0.681 4.681 22 H 0.088 0.912 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.743 3.257 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.240 0.760 38 H 0.244 0.756 39 H 0.269 0.731 40 H 0.226 0.774 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.678 -8.392 -19.217 21.037 hybrid contribution 1.159 -2.690 1.308 3.208 sum 2.837 -11.082 -17.909 21.251 Atomic orbital electron populations 1.22177 0.95257 1.01979 1.02711 1.20908 0.93949 0.97825 0.83639 0.89275 1.22256 0.94220 1.02021 0.98827 1.21039 0.92122 0.97886 0.85264 0.88902 1.22180 1.02269 1.01030 0.96583 1.45897 1.17931 1.37614 1.34221 1.16705 0.81252 0.81785 0.80804 1.90817 1.61785 1.29935 1.58812 1.21693 0.95320 1.00427 1.02427 1.25276 0.99099 0.93814 0.87153 1.84459 1.41459 1.37767 1.44304 1.28088 0.79993 0.97153 0.98782 1.70681 1.30282 1.11597 1.07213 1.46184 1.69295 1.13454 1.09614 1.20266 0.76697 0.87196 0.83793 1.90692 1.48375 1.15721 1.84430 1.23504 1.03583 1.04581 0.98367 1.85406 1.86286 1.12997 0.98763 1.22782 1.50971 0.97974 0.96350 0.91180 1.24974 0.95179 0.95480 0.97883 1.70008 1.45519 1.13202 1.21549 0.86267 0.79241 0.80104 0.80136 1.19993 1.20823 1.19941 0.92619 0.91609 0.91911 0.88584 0.90673 0.92427 0.91433 0.91949 0.76001 0.75585 0.73064 0.77361 0.89572 0.89415 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.48 37.16 0.35 -1.36 16 2 C 0.14 1.60 2.57 -67.93 -0.17 1.43 16 3 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 4 C -0.13 -1.02 4.43 -26.73 -0.12 -1.14 16 5 C 0.14 1.35 2.57 -67.94 -0.17 1.18 16 6 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 7 C -0.16 -1.29 9.48 37.16 0.35 -0.94 16 8 N -0.70 -7.84 3.80 -54.89 -0.21 -8.05 16 9 C 0.61 8.60 7.78 -12.52 -0.10 8.50 16 10 O -0.54 -8.91 16.55 5.27 0.09 -8.82 16 11 C -0.08 -1.07 6.99 -83.02 -0.58 -1.65 16 12 C 0.02 0.26 11.95 29.96 0.36 0.62 16 13 O -0.20 -2.32 10.73 6.53 0.07 -2.25 16 14 C 0.19 2.04 13.19 51.96 0.69 2.73 16 15 N -0.47 -5.86 10.91 -11.48 -0.13 -5.98 16 16 N -0.73 -9.75 3.80 -53.80 -0.20 -9.95 16 17 C 0.53 10.19 7.81 -10.98 -0.09 10.11 16 18 O -0.52 -11.99 15.52 5.56 0.09 -11.91 16 19 C -0.15 -3.11 6.16 36.00 0.22 -2.88 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.53 -15.05 9.50 30.94 0.29 -14.76 16 22 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 25 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.40 4.02 6.24 -40.82 -0.25 3.76 16 38 H 0.23 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.25 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.39 4.32 6.51 -40.82 -0.27 4.05 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.76 8.00 -51.91 -0.42 1.34 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -37.49 384.80 -5.98 -43.47 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.92 Total: 7.12 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 0.94 Total: 3.83 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.20 Total: -49.45 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.24 Total: -22.98 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.49 -5.98 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735558423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.635 kcal (2) G-P(sol) polarization free energy of solvation -37.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds