Wall clock time and date at job start Tue Mar 31 2020 23:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47259 * 2 1 4 4 C 1.34780 * 119.99608 * 275.32128 * 3 2 1 5 5 O 1.21615 * 119.99530 * 184.91787 * 4 3 2 6 6 C 1.47413 * 120.00300 * 4.91205 * 4 3 2 7 7 C 1.36091 * 126.45162 * 185.34343 * 6 4 3 8 8 O 1.34259 * 106.95161 * 180.02562 * 7 6 4 9 9 C 1.34045 * 108.22708 * 359.97438 * 8 7 6 10 10 N 1.29936 * 109.24296 * 359.72327 * 9 8 7 11 11 C 1.46493 * 120.00390 * 95.31575 * 3 2 1 12 12 H 1.08997 * 109.47344 * 180.02562 * 11 3 2 13 13 C 1.53001 * 109.46831 * 60.00064 * 11 3 2 14 14 C 1.53001 * 109.47134 * 300.00366 * 11 3 2 15 15 N 1.46500 * 109.47238 * 304.99682 * 14 11 3 16 16 C 1.34774 * 119.99864 * 180.02562 * 15 14 11 17 17 O 1.21275 * 120.00489 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99524 * 179.97438 * 16 15 14 19 19 S 1.80998 * 109.46818 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99970 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99904 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00331 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00445 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99663 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47290 * 89.99588 * 24 22 20 26 26 H 1.48497 * 109.47313 * 209.99537 * 24 22 20 27 27 H 1.48497 * 109.47455 * 329.99463 * 24 22 20 28 28 H 1.08998 * 109.47074 * 300.00174 * 1 2 3 29 29 H 1.09007 * 109.47036 * 59.99939 * 1 2 3 30 30 H 1.08996 * 109.47276 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47074 * 239.99826 * 2 1 3 32 32 H 1.08996 * 109.47237 * 119.99616 * 2 1 3 33 33 H 1.08008 * 126.52241 * 0.02562 * 7 6 4 34 34 H 1.08002 * 125.37977 * 180.02562 * 9 8 7 35 35 H 1.08997 * 109.47314 * 300.00211 * 13 11 3 36 36 H 1.09009 * 109.47065 * 60.00416 * 13 11 3 37 37 H 1.09003 * 109.46997 * 179.97438 * 13 11 3 38 38 H 1.09002 * 109.46779 * 65.00090 * 14 11 3 39 39 H 1.09007 * 109.46788 * 184.99706 * 14 11 3 40 40 H 0.97000 * 119.99545 * 359.97438 * 15 14 11 41 41 H 1.08997 * 109.47446 * 300.00415 * 18 16 15 42 42 H 1.09007 * 109.47144 * 60.00498 * 18 16 15 43 43 H 0.96995 * 120.00431 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1409 2.0526 -1.1622 5 8 2.6298 3.1661 -1.1725 6 6 1.6825 1.4372 -2.4209 7 6 1.8337 1.9485 -3.6730 8 8 1.2748 1.0729 -4.5236 9 6 0.7914 0.0459 -3.8105 10 7 1.0341 0.2479 -2.5501 11 6 2.3733 2.0327 1.2632 12 1 2.7127 3.0493 1.0649 13 6 3.4930 1.2448 1.9462 14 6 1.1475 2.0741 2.1778 15 7 0.0372 2.7241 1.4772 16 6 -1.1525 2.8739 2.0926 17 8 -1.3037 2.4711 3.2265 18 6 -2.2944 3.5431 1.3721 19 16 -3.7446 3.5919 2.4541 20 6 -4.8932 4.4003 1.3901 21 1 -4.5918 4.6977 0.3965 22 6 -6.1855 4.6539 1.8284 23 7 -7.0436 5.2572 1.0334 24 14 -6.7069 4.1388 3.5466 25 1 -6.4325 5.2443 4.4994 26 1 -8.1594 3.8302 3.5515 27 1 -5.9432 2.9325 3.9549 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.3121 2.8813 -3.9329 34 1 0.2849 -0.8158 -4.2195 35 1 3.1532 0.2283 2.1446 36 1 4.3663 1.2153 1.2946 37 1 3.7575 1.7298 2.8859 38 1 0.8614 1.0576 2.4480 39 1 1.3866 2.6364 3.0805 40 1 0.1585 3.0473 0.5708 41 1 -2.0079 4.5594 1.1018 42 1 -2.5339 2.9809 0.4694 43 1 -7.9466 5.4348 1.3398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735595788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:51 Heat of formation + Delta-G solvation = -31.199209 kcal Electronic energy + Delta-G solvation = -27874.524742 eV Core-core repulsion = 23855.870355 eV Total energy + Delta-G solvation = -4018.654387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.82925 -40.54365 -39.07984 -37.05038 -35.48551 -34.11854 -32.47437 -32.41426 -30.77849 -30.07939 -29.41520 -26.07734 -25.53898 -24.87549 -23.56127 -23.20395 -21.60657 -20.38886 -19.73963 -18.25896 -17.87431 -17.42976 -17.11826 -16.65864 -16.35504 -15.90536 -15.44116 -15.23757 -15.10455 -14.93746 -14.36196 -14.13667 -13.92582 -13.71779 -13.57913 -13.24876 -13.15990 -12.86117 -12.78181 -12.63950 -12.23085 -12.05081 -11.89497 -11.78402 -11.25155 -11.07573 -10.99644 -10.94751 -10.86591 -10.58621 -10.34242 -9.84662 -9.60019 -9.51153 -9.00319 -8.98796 -8.92150 -8.48393 -6.89769 -6.27450 -3.98866 0.73439 1.64850 2.27714 2.56297 2.79600 2.92767 3.01017 3.32467 3.35926 3.51491 3.59353 3.69187 4.22415 4.34472 4.44764 4.48329 4.70955 4.80367 4.84561 4.91445 5.11612 5.11674 5.19944 5.25790 5.28050 5.30146 5.35752 5.41643 5.55601 5.59875 5.70174 5.79053 5.81560 5.86648 5.96963 6.04612 6.29195 6.39780 6.55068 6.93254 7.11583 7.62498 7.76271 7.95691 8.43438 8.51529 9.18757 10.81910 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012777 B = 0.003056 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.841853 B = 9159.023662 C =10475.133553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.590 5.590 4 C 0.600 3.400 5 O -0.537 6.537 6 C -0.075 4.075 7 C 0.019 3.981 8 O -0.199 6.199 9 C 0.176 3.824 10 N -0.455 5.455 11 C 0.123 3.877 12 H 0.110 0.890 13 C -0.157 4.157 14 C 0.113 3.887 15 N -0.730 5.730 16 C 0.532 3.468 17 O -0.520 6.520 18 C -0.124 4.124 19 S -0.140 6.140 20 C -0.521 4.521 21 H 0.087 0.913 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.229 0.771 34 H 0.254 0.746 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.398 0.602 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.320 -12.893 -9.190 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.322 5.322 4 C 0.388 3.612 5 O -0.414 6.414 6 C -0.194 4.194 7 C -0.055 4.055 8 O -0.083 6.083 9 C -0.053 4.053 10 N -0.185 5.185 11 C 0.020 3.980 12 H 0.127 0.873 13 C -0.216 4.216 14 C -0.013 4.013 15 N -0.384 5.384 16 C 0.318 3.682 17 O -0.395 6.395 18 C -0.274 4.274 19 S 0.086 5.914 20 C -0.669 4.669 21 H 0.105 0.895 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.246 0.754 34 H 0.269 0.731 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.232 0.768 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.977 -13.336 -6.830 27.431 hybrid contribution -0.233 0.848 -1.742 1.951 sum 22.744 -12.488 -8.571 27.326 Atomic orbital electron populations 1.22228 0.94885 1.02282 1.02824 1.21754 0.95553 0.80794 1.03088 1.47889 1.64045 1.14960 1.05332 1.16861 0.77990 0.84345 0.82006 1.90844 1.45278 1.19094 1.86210 1.21680 1.07639 0.94915 0.95176 1.25326 0.97284 0.95443 0.87437 1.84460 1.56217 1.27959 1.39714 1.28291 0.98930 0.92625 0.85414 1.71090 1.14377 1.14879 1.18107 1.21449 0.94441 0.99195 0.82918 0.87250 1.22061 0.97670 1.00746 1.01087 1.21689 0.85578 0.98943 0.95045 1.45901 1.11502 1.62408 1.18634 1.20224 0.82830 0.78596 0.86547 1.90694 1.82348 1.48475 1.17982 1.23270 0.97403 1.03410 1.03336 1.84739 1.04646 1.78954 1.23022 1.22327 0.97948 1.43696 1.02909 0.89461 1.24706 0.95215 0.93533 0.97805 1.69935 1.05545 1.39970 1.36320 0.86734 0.79107 0.81620 0.84387 1.19203 1.19952 1.15917 0.92201 0.91662 0.92057 0.88647 0.90939 0.75445 0.73054 0.91724 0.91673 0.90681 0.90961 0.90318 0.76813 0.88637 0.88727 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.22 37.16 0.34 -1.38 16 2 C 0.11 0.96 4.98 -4.04 -0.02 0.94 16 3 N -0.59 -5.69 1.87 -167.38 -0.31 -6.00 16 4 C 0.60 6.67 7.33 -12.52 -0.09 6.57 16 5 O -0.54 -7.19 16.23 5.26 0.09 -7.10 16 6 C -0.07 -0.72 6.40 -83.02 -0.53 -1.25 16 7 C 0.02 0.15 11.95 29.96 0.36 0.51 16 8 O -0.20 -1.37 10.73 6.52 0.07 -1.30 16 9 C 0.18 1.02 13.19 51.96 0.69 1.71 16 10 N -0.46 -3.83 6.09 -11.49 -0.07 -3.90 16 11 C 0.12 1.14 2.79 -67.93 -0.19 0.95 16 12 H 0.11 1.14 6.91 -51.93 -0.36 0.78 16 13 C -0.16 -1.08 9.18 37.16 0.34 -0.74 16 14 C 0.11 1.27 4.33 -4.04 -0.02 1.25 16 15 N -0.73 -10.06 3.99 -60.29 -0.24 -10.30 16 16 C 0.53 9.74 7.61 -10.99 -0.08 9.65 16 17 O -0.52 -11.27 15.86 5.56 0.09 -11.18 16 18 C -0.12 -2.50 6.16 36.01 0.22 -2.28 16 19 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 20 C -0.52 -15.27 10.04 30.94 0.31 -14.96 16 21 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 22 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 23 N -0.88 -26.86 13.97 55.49 0.78 -26.09 16 24 Si 0.86 22.00 27.74 -169.99 -4.71 17.29 16 25 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 28 H 0.06 0.76 4.96 -51.93 -0.26 0.50 16 29 H 0.06 0.76 6.28 -51.93 -0.33 0.43 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.82 5.84 -51.93 -0.30 0.51 16 32 H 0.07 0.54 6.44 -51.93 -0.33 0.21 16 33 H 0.23 1.20 8.06 -52.48 -0.42 0.77 16 34 H 0.25 0.30 8.06 -52.49 -0.42 -0.12 16 35 H 0.06 0.40 6.67 -51.93 -0.35 0.06 16 36 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.84 7.02 -51.93 -0.36 0.47 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.40 5.20 7.87 -40.82 -0.32 4.88 16 41 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 42 H 0.09 1.82 8.14 -51.91 -0.42 1.39 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -36.62 367.96 -5.11 -41.73 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.57 Total: 3.19 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 1.23 Total: 3.72 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.15 Total: -46.29 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: 0.24 Total: -19.58 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.62 -5.11 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735595788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.532 kcal (2) G-P(sol) polarization free energy of solvation -36.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds