Wall clock time and date at job start Tue Mar 31 2020 23:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47493 * 2 1 4 4 C 1.46502 * 119.99963 * 92.86384 * 3 2 1 5 5 C 1.52994 * 109.47108 * 90.00383 * 4 3 2 6 6 N 1.46492 * 109.47504 * 179.97438 * 5 4 3 7 7 C 1.34780 * 120.00727 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99400 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00257 * 179.97438 * 7 6 5 10 10 S 1.81001 * 109.47062 * 180.02562 * 9 7 6 11 11 C 1.76193 * 100.00074 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00238 * 359.97438 * 11 10 9 13 13 C 1.38802 * 120.00034 * 180.02562 * 11 10 9 14 14 N 1.31628 * 119.99832 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99948 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47035 * 89.99480 * 15 13 11 17 17 H 1.48494 * 109.46956 * 209.99224 * 15 13 11 18 18 H 1.48494 * 109.47075 * 329.99592 * 15 13 11 19 19 C 1.34774 * 119.99635 * 272.86644 * 3 2 1 20 20 O 1.21504 * 119.99775 * 185.24067 * 19 3 2 21 21 C 1.48325 * 120.00750 * 5.24126 * 19 3 2 22 22 N 1.30987 * 126.93522 * 5.73117 * 21 19 3 23 23 O 1.20900 * 111.44174 * 179.97438 * 22 21 19 24 24 C 1.34015 * 111.84961 * 359.97438 * 23 22 21 25 25 C 1.35317 * 106.66247 * 359.74929 * 24 23 22 26 26 C 1.50705 * 128.03687 * 180.23804 * 25 24 23 27 27 H 1.09000 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46838 * 300.00370 * 1 2 3 29 29 H 1.09002 * 109.46980 * 59.99468 * 1 2 3 30 30 H 1.09000 * 109.46838 * 239.99630 * 2 1 3 31 31 H 1.09002 * 109.46980 * 120.00532 * 2 1 3 32 32 H 1.08998 * 109.46834 * 209.99953 * 4 3 2 33 33 H 1.08996 * 109.46964 * 329.99852 * 4 3 2 34 34 H 1.09004 * 109.47149 * 300.00170 * 5 4 3 35 35 H 1.08998 * 109.47480 * 59.99362 * 5 4 3 36 36 H 0.97006 * 120.00084 * 0.02562 * 6 5 4 37 37 H 1.08998 * 109.46951 * 300.00027 * 9 7 6 38 38 H 1.08996 * 109.46921 * 59.99971 * 9 7 6 39 39 H 0.97003 * 119.99974 * 180.02562 * 14 13 11 40 40 H 1.08001 * 126.67006 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.46946 * 270.15462 * 26 25 24 42 42 H 1.08994 * 109.46944 * 30.16068 * 26 25 24 43 43 H 1.09007 * 109.46804 * 150.16314 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3224 2.0506 1.2672 5 6 3.7864 1.8034 1.6361 6 7 4.0906 2.4733 2.9029 7 6 5.3294 2.3924 3.4277 8 8 6.1925 1.7652 2.8508 9 6 5.6424 3.0820 4.7306 10 16 7.3744 2.7895 5.1672 11 6 7.4622 3.6808 6.6845 12 1 6.5887 4.1912 7.0623 13 6 8.6544 3.7278 7.3938 14 7 9.7192 3.1061 6.9331 15 14 8.7473 4.6721 9.0028 16 1 8.4013 3.7674 10.1284 17 1 10.1249 5.1932 9.1921 18 1 7.7895 5.8064 8.9671 19 6 2.1880 2.0359 -1.1658 20 8 2.6822 3.1458 -1.1728 21 6 1.7714 1.4016 -2.4402 22 7 1.1349 0.2657 -2.5829 23 8 0.9354 0.0143 -3.7485 24 6 1.4214 0.9681 -4.5547 25 6 1.9761 1.9074 -3.7541 26 6 2.6561 3.1896 -4.1600 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.1499 3.1218 1.1626 33 1 1.6779 1.6537 2.0515 34 1 3.9590 0.7322 1.7406 35 1 4.4309 2.2003 0.8518 36 1 3.4003 2.9746 3.3645 37 1 5.4706 4.1532 4.6250 38 1 4.9977 2.6862 5.5152 39 1 10.5523 3.1386 7.4290 40 1 1.3749 0.9860 -5.6336 41 1 3.7204 3.0056 -4.3070 42 1 2.2186 3.5544 -5.0893 43 1 2.5211 3.9360 -3.3772 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737789510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:53 Heat of formation + Delta-G solvation = -0.304552 kcal Electronic energy + Delta-G solvation = -26442.251974 eV Core-core repulsion = 22424.937280 eV Total energy + Delta-G solvation = -4017.314694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.54292 -40.40409 -39.07149 -36.78822 -35.23210 -34.67014 -32.80954 -32.41757 -31.41151 -29.97683 -28.70465 -28.02794 -25.52623 -25.12395 -23.85816 -22.79309 -22.11737 -20.56949 -19.94704 -18.34771 -18.05094 -17.83137 -17.21585 -16.76670 -16.29114 -15.79186 -15.44154 -15.10830 -14.89932 -14.79313 -14.38285 -14.19390 -13.94832 -13.80964 -13.64301 -13.63238 -13.20834 -13.03676 -12.70534 -12.56552 -12.37123 -12.28720 -12.07718 -11.76693 -11.54632 -11.39291 -11.05409 -11.01362 -10.75975 -10.66038 -10.52789 -9.87104 -9.81224 -9.46994 -9.18201 -9.06154 -8.90931 -8.22331 -6.48866 -6.20516 -3.91041 0.67510 1.21497 2.21444 2.67454 2.71168 3.08960 3.10813 3.23224 3.29135 3.33665 3.42874 3.77409 3.99057 4.21437 4.35006 4.53016 4.61342 4.62347 4.68956 4.87527 4.90870 5.06672 5.13803 5.14605 5.18224 5.20159 5.25737 5.36713 5.40611 5.50491 5.62131 5.65924 5.81338 5.85265 5.86346 5.90663 6.07972 6.15006 6.57706 6.79649 7.45513 7.60630 7.66274 7.69302 8.36349 8.61159 9.24685 10.86917 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026564 B = 0.001805 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.804939 B =15507.065359 C =15949.526697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.595 5.595 4 C 0.108 3.892 5 C 0.108 3.892 6 N -0.737 5.737 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.152 4.152 10 S -0.060 6.060 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.598 3.402 20 O -0.512 6.512 21 C -0.027 4.027 22 N -0.322 5.322 23 O 0.119 5.881 24 C -0.066 4.066 25 C -0.149 4.149 26 C -0.086 4.086 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.399 0.601 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.223 0.777 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.712 -4.966 -22.646 33.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.329 5.329 4 C -0.015 4.015 5 C -0.018 4.018 6 N -0.392 5.392 7 C 0.319 3.681 8 O -0.390 6.390 9 C -0.303 4.303 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.746 3.254 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.383 3.617 20 O -0.385 6.385 21 C -0.186 4.186 22 N -0.024 5.024 23 O 0.044 5.956 24 C -0.146 4.146 25 C -0.154 4.154 26 C -0.142 4.142 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.232 0.768 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.240 0.760 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.239 -6.344 -22.668 32.383 hybrid contribution -0.980 2.036 1.474 2.698 sum -23.219 -4.308 -21.194 31.731 Atomic orbital electron populations 1.22102 0.95143 1.02631 1.02031 1.21860 0.95219 0.81074 1.04090 1.47706 1.64866 1.14968 1.05324 1.21661 0.95706 0.99524 0.84610 1.21550 0.95265 0.98139 0.86841 1.45827 1.13065 1.56128 1.24194 1.20316 0.81233 0.80224 0.86326 1.90709 1.45911 1.40839 1.61530 1.23523 1.07637 1.02951 0.96200 1.85415 1.00500 1.69430 1.28046 1.22868 0.99798 1.37692 1.07988 0.90901 1.25001 0.94680 0.95605 0.98362 1.70021 1.01133 1.40636 1.38493 0.86157 0.77608 0.79657 0.82016 1.20287 1.20756 1.19692 1.16966 0.78412 0.84755 0.81536 1.90822 1.42819 1.18977 1.85888 1.23350 1.04459 0.94398 0.96389 1.74386 1.14885 1.15576 0.97554 1.84790 1.58198 1.41044 1.11530 1.25789 1.00767 0.88872 0.99201 1.21396 1.03350 1.00346 0.90274 1.20265 0.99722 0.91846 1.02414 0.91166 0.92663 0.92242 0.89048 0.89710 0.88875 0.89281 0.91505 0.91072 0.76773 0.89110 0.89152 0.92190 0.76040 0.90351 0.90890 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.70 37.16 0.36 -0.74 16 2 C 0.10 0.79 5.67 -4.04 -0.02 0.77 16 3 N -0.60 -5.86 2.48 -174.63 -0.43 -6.29 16 4 C 0.11 1.01 5.47 -4.04 -0.02 0.99 16 5 C 0.11 1.36 6.00 -4.05 -0.02 1.34 16 6 N -0.74 -10.10 5.56 -60.30 -0.33 -10.44 16 7 C 0.53 10.24 7.85 -10.99 -0.09 10.15 16 8 O -0.52 -12.16 15.86 5.55 0.09 -12.07 16 9 C -0.15 -3.12 6.16 36.00 0.22 -2.89 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 12 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 15 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 C 0.60 6.99 7.67 -12.11 -0.09 6.89 16 20 O -0.51 -7.28 14.94 5.36 0.08 -7.20 16 21 C -0.03 -0.27 6.69 -82.53 -0.55 -0.82 16 22 N -0.32 -2.79 7.17 33.29 0.24 -2.55 16 23 O 0.12 0.81 11.18 17.25 0.19 1.00 16 24 C -0.07 -0.32 12.24 29.69 0.36 0.04 16 25 C -0.15 -1.16 6.34 -104.11 -0.66 -1.82 16 26 C -0.09 -0.59 10.06 36.01 0.36 -0.22 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.48 6.60 -51.93 -0.34 0.14 16 30 H 0.09 0.78 5.76 -51.93 -0.30 0.48 16 31 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 32 H 0.09 0.91 7.50 -51.93 -0.39 0.52 16 33 H 0.09 0.61 8.07 -51.93 -0.42 0.19 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.40 4.07 8.47 -40.82 -0.35 3.73 16 37 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 39 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.22 0.07 8.06 -52.49 -0.42 -0.36 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.09 0.80 6.81 -51.93 -0.35 0.45 16 LS Contribution 381.25 15.07 5.75 5.75 Total: -1.00 -37.57 381.25 -6.80 -44.36 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.92 Total: -0.15 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 0.05 Total: 0.59 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.20 Total: -44.94 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.36 Total: -18.27 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.57 -6.80 -44.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737789510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.059 kcal (2) G-P(sol) polarization free energy of solvation -37.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds