Wall clock time and date at job start Tue Mar 31 2020 23:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35533 * 125.67504 * 2 1 4 4 C 1.35451 * 108.87023 * 179.73362 * 3 2 1 5 5 C 1.39835 * 107.86848 * 359.97438 * 4 3 2 6 6 C 1.37652 * 125.67941 * 179.68775 * 2 1 3 7 7 C 1.46681 * 126.23116 * 0.26619 * 6 2 1 8 8 O 1.21693 * 120.00286 * 5.69307 * 7 6 2 9 9 N 1.34770 * 119.99799 * 185.69552 * 7 6 2 10 10 C 1.46500 * 119.99948 * 185.14081 * 9 7 6 11 11 C 1.53002 * 109.47133 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47512 * 304.99942 * 11 10 9 13 13 O 1.42903 * 109.47312 * 65.00267 * 11 10 9 14 14 C 1.53007 * 109.47419 * 185.00322 * 11 10 9 15 15 N 1.46498 * 109.47330 * 180.02562 * 14 11 10 16 16 C 1.34779 * 119.99585 * 179.97438 * 15 14 11 17 17 O 1.21276 * 120.00102 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99548 * 179.97438 * 16 15 14 19 19 S 1.80999 * 109.47046 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00042 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00325 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99958 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00053 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99677 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47334 * 60.00726 * 24 22 20 26 26 H 1.48502 * 109.46848 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47404 * 300.00035 * 24 22 20 28 28 H 1.09003 * 109.47149 * 86.02841 * 1 2 3 29 29 H 1.09007 * 109.47555 * 206.02451 * 1 2 3 30 30 H 1.08994 * 109.47888 * 326.03030 * 1 2 3 31 31 H 1.07991 * 125.56755 * 359.71067 * 3 2 1 32 32 H 1.07998 * 126.06925 * 179.97438 * 4 3 2 33 33 H 1.07993 * 126.46215 * 179.97438 * 5 4 3 34 34 H 0.97009 * 120.00363 * 5.14682 * 9 7 6 35 35 H 1.08993 * 109.47657 * 299.99979 * 10 9 7 36 36 H 1.09003 * 109.47150 * 60.00369 * 10 9 7 37 37 H 0.96698 * 113.99718 * 59.99833 * 13 11 10 38 38 H 1.09005 * 109.46468 * 300.00259 * 14 11 10 39 39 H 1.09001 * 109.46901 * 59.99493 * 14 11 10 40 40 H 0.96995 * 120.00137 * 359.97438 * 15 14 11 41 41 H 1.08995 * 109.47281 * 300.00495 * 18 16 15 42 42 H 1.08997 * 109.46907 * 60.00497 * 18 16 15 43 43 H 0.97000 * 119.99875 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5520 0.7094 0.0060 5 6 3.5780 -0.6887 0.0104 6 6 2.2678 -1.1181 0.0061 7 6 1.8124 -2.5124 0.0082 8 8 0.6270 -2.7656 -0.1001 9 7 2.7067 -3.5132 0.1301 10 6 2.2668 -4.9062 0.0194 11 6 3.4690 -5.8362 0.1952 12 1 4.2446 -5.5671 -0.5219 13 8 3.9818 -5.7061 1.5227 14 6 3.0336 -7.2834 -0.0438 15 7 4.1846 -8.1739 0.1251 16 6 4.0373 -9.5037 -0.0377 17 8 2.9519 -9.9631 -0.3235 18 6 5.2214 -10.4196 0.1355 19 16 4.7059 -12.1318 -0.1457 20 6 6.2394 -12.9596 0.1143 21 1 7.1233 -12.3925 0.3663 22 6 6.3112 -14.3408 -0.0036 23 7 5.2337 -15.0320 -0.3101 24 14 7.9368 -15.2184 0.2728 25 1 8.4154 -14.9510 1.6528 26 1 7.7479 -16.6798 0.0885 27 1 8.9395 -14.7224 -0.7038 28 1 -0.3633 0.0712 -1.0252 29 1 -0.3634 -0.9235 0.4509 30 1 -0.3635 0.8522 0.5742 31 1 1.9081 2.1235 -0.0044 32 1 4.4131 1.3612 0.0071 33 1 4.4583 -1.3143 0.0152 34 1 3.6418 -3.3112 0.2913 35 1 1.5289 -5.1169 0.7934 36 1 1.8211 -5.0696 -0.9618 37 1 3.3442 -5.9302 2.2143 38 1 2.2581 -7.5525 0.6733 39 1 2.6424 -7.3826 -1.0563 40 1 5.0525 -7.8065 0.3540 41 1 5.9967 -10.1508 -0.5819 42 1 5.6127 -10.3201 1.1479 43 1 5.2839 -15.9972 -0.3922 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738401009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:38 Heat of formation + Delta-G solvation = -76.166638 kcal Electronic energy + Delta-G solvation = -25527.708334 eV Core-core repulsion = 21507.104013 eV Total energy + Delta-G solvation = -4020.604321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.79299 -39.84708 -39.19716 -37.88991 -34.94934 -34.18614 -33.21479 -32.43046 -31.16142 -29.93105 -28.69630 -26.92216 -25.80364 -25.34800 -22.83745 -22.33785 -20.96253 -20.38899 -19.98986 -18.43732 -17.97805 -17.25080 -16.81723 -16.42395 -16.28611 -16.00936 -15.55855 -15.31060 -15.14326 -14.80368 -14.65131 -14.34552 -14.07418 -13.84258 -13.77230 -13.66236 -13.18703 -13.08665 -12.82332 -12.77526 -12.60536 -12.55627 -12.43465 -11.78532 -11.50450 -11.04950 -11.03773 -10.81144 -10.71192 -10.37550 -9.82825 -9.60562 -9.45811 -9.19030 -9.07004 -8.96542 -8.66444 -8.24966 -6.50752 -6.21755 -3.92646 1.04051 2.14629 2.30573 2.79412 2.97646 3.05474 3.06426 3.23712 3.27654 3.30914 3.64524 3.93305 4.20394 4.24078 4.30000 4.39146 4.50895 4.55478 4.57144 4.78609 4.94353 4.98545 5.09972 5.13448 5.14380 5.17749 5.24893 5.48019 5.60045 5.61688 5.72595 5.73767 5.88235 5.89819 6.13498 6.29437 6.51557 6.53505 6.74338 7.03376 7.13340 7.59124 7.66215 7.75381 8.34853 8.56660 9.23454 10.85613 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.036883 B = 0.001485 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.979391 B =18844.561042 C =19437.370464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.411 5.411 3 C 0.014 3.986 4 C -0.207 4.207 5 C -0.139 4.139 6 C -0.055 4.055 7 C 0.590 3.410 8 O -0.550 6.550 9 N -0.712 5.712 10 C 0.093 3.907 11 C 0.086 3.914 12 H 0.115 0.885 13 O -0.554 6.554 14 C 0.093 3.907 15 N -0.733 5.733 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.169 0.831 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.408 0.592 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.382 0.618 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.403 0.597 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 34.141 2.015 34.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.083 5.083 3 C -0.121 4.121 4 C -0.231 4.231 5 C -0.165 4.165 6 C -0.169 4.169 7 C 0.378 3.622 8 O -0.429 6.429 9 N -0.364 5.364 10 C -0.032 4.032 11 C 0.026 3.974 12 H 0.132 0.868 13 O -0.360 6.360 14 C -0.033 4.033 15 N -0.389 5.389 16 C 0.318 3.682 17 O -0.392 6.392 18 C -0.303 4.303 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.100 0.900 31 H 0.186 0.814 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.244 0.756 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.230 0.770 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.238 0.762 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.117 33.128 1.081 33.901 hybrid contribution 2.598 0.190 0.885 2.752 sum -4.519 33.318 1.967 33.680 Atomic orbital electron populations 1.22308 0.76005 1.05515 1.03885 1.43872 1.06891 1.04966 1.52610 1.22066 0.90756 0.91569 1.07725 1.20856 0.96077 0.95053 1.11145 1.21385 0.94390 0.95616 1.05142 1.19997 0.90543 0.87487 1.18851 1.16978 0.85434 0.83598 0.76209 1.90798 1.16267 1.84866 1.50998 1.45451 1.12000 1.05283 1.73657 1.21998 0.97120 0.80150 1.03893 1.22398 0.96070 0.92922 0.85990 0.86767 1.86590 1.43540 1.91082 1.14823 1.21804 0.89983 0.88228 1.03253 1.45832 1.12420 1.06421 1.74195 1.20339 0.90345 0.81720 0.75776 1.90709 1.27490 1.75381 1.45652 1.23523 0.98878 1.02925 1.05022 1.85391 1.15560 0.90631 1.91796 1.22834 0.95655 0.94499 1.55524 0.90939 1.24990 0.97591 0.96389 0.94557 1.70007 1.27991 1.07513 1.44785 0.86220 0.82165 0.78211 0.78879 1.19931 1.20810 1.19939 0.90472 0.87745 0.89960 0.81362 0.83873 0.83768 0.75610 0.90305 0.89791 0.76962 0.90901 0.90309 0.76232 0.89170 0.89128 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.64 59.85 0.64 1.02 16 2 N -0.41 -3.22 3.16 -120.24 -0.38 -3.60 16 3 C 0.01 0.09 11.38 -16.91 -0.19 -0.10 16 4 C -0.21 -1.36 10.81 -39.98 -0.43 -1.79 16 5 C -0.14 -1.01 10.35 -39.12 -0.40 -1.41 16 6 C -0.06 -0.49 6.88 -81.98 -0.56 -1.06 16 7 C 0.59 5.77 7.77 -12.85 -0.10 5.67 16 8 O -0.55 -6.92 14.67 5.20 0.08 -6.85 16 9 N -0.71 -5.10 5.48 -61.62 -0.34 -5.44 16 10 C 0.09 0.64 5.32 -4.04 -0.02 0.62 16 11 C 0.09 0.56 3.09 -26.73 -0.08 0.47 16 12 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 13 O -0.55 -3.74 13.03 -35.23 -0.46 -4.20 16 14 C 0.09 0.90 5.34 -4.04 -0.02 0.88 16 15 N -0.73 -9.01 5.45 -60.29 -0.33 -9.34 16 16 C 0.53 9.60 7.85 -10.98 -0.09 9.52 16 17 O -0.52 -11.50 15.86 5.56 0.09 -11.41 16 18 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 24 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.81 6.22 -51.93 -0.32 0.49 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.14 0.73 7.49 -52.49 -0.39 0.34 16 34 H 0.41 2.23 7.43 -40.82 -0.30 1.93 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.38 1.83 9.05 45.56 0.41 2.24 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.40 4.05 8.35 -40.82 -0.34 3.71 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -38.12 386.92 -8.00 -46.13 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.14 Total: 3.73 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.85 Total: -1.93 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -0.31 Total: -43.75 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.29 Total: -22.46 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.12 -8.00 -46.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738401009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.039 kcal (2) G-P(sol) polarization free energy of solvation -38.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds