Wall clock time and date at job start Tue Mar 31 2020 23:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46938 * 2 1 4 4 C 1.53001 * 109.46775 * 119.99506 * 2 1 3 5 5 N 1.46500 * 109.46847 * 175.00171 * 4 2 1 6 6 C 1.46508 * 120.00216 * 270.00008 * 5 4 2 7 7 C 1.34769 * 120.00200 * 90.00117 * 5 4 2 8 8 O 1.21285 * 119.99839 * 0.02562 * 7 5 4 9 9 C 1.50705 * 120.00638 * 179.97438 * 7 5 4 10 10 S 1.80991 * 109.47499 * 180.02562 * 9 7 5 11 11 C 1.76203 * 100.00085 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99911 * 359.97438 * 11 10 9 13 13 C 1.38802 * 120.00236 * 180.02562 * 11 10 9 14 14 N 1.31629 * 119.99790 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99970 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47413 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47085 * 120.00200 * 15 13 11 18 18 H 1.48502 * 109.46862 * 239.99691 * 15 13 11 19 19 N 1.46498 * 109.47385 * 239.99557 * 2 1 3 20 20 C 1.34776 * 119.99871 * 84.99670 * 19 2 1 21 21 O 1.21280 * 119.99688 * 0.02562 * 20 19 2 22 22 C 1.50698 * 119.99971 * 179.97438 * 20 19 2 23 23 C 1.50705 * 109.46910 * 180.02562 * 22 20 19 24 24 C 1.41379 * 128.00562 * 269.95837 * 23 22 20 25 25 N 1.30179 * 106.39170 * 180.02562 * 24 23 22 26 26 O 1.20917 * 111.60766 * 359.97438 * 25 24 23 27 27 C 1.34044 * 111.56675 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47537 * 299.99965 * 1 2 3 29 29 H 1.08996 * 109.47075 * 60.00453 * 1 2 3 30 30 H 1.09004 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47736 * 295.00139 * 4 2 1 32 32 H 1.09008 * 109.47389 * 55.00559 * 4 2 1 33 33 H 1.09000 * 109.46738 * 90.00096 * 6 5 4 34 34 H 1.08992 * 109.47268 * 209.99949 * 6 5 4 35 35 H 1.08998 * 109.46704 * 330.00245 * 6 5 4 36 36 H 1.09002 * 109.47059 * 300.00605 * 9 7 5 37 37 H 1.09005 * 109.46476 * 59.99972 * 9 7 5 38 38 H 0.97000 * 120.00166 * 179.97438 * 14 13 11 39 39 H 0.96997 * 120.00264 * 265.00516 * 19 2 1 40 40 H 1.09006 * 109.46832 * 60.00600 * 22 20 19 41 41 H 1.08999 * 109.47512 * 300.00652 * 22 20 19 42 42 H 1.07999 * 126.80492 * 0.02562 * 24 23 22 43 43 H 1.07999 * 126.77991 * 179.73774 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1259 -1.9919 0.5614 7 6 4.2675 0.1493 1.7157 8 8 3.7494 1.1140 2.2371 9 6 5.7694 0.0410 1.6559 10 16 6.5108 1.4944 2.4393 11 6 8.2192 1.1154 2.2325 12 1 8.5135 0.2010 1.7391 13 6 9.1866 1.9917 2.7046 14 7 8.8278 3.1060 3.3065 15 14 10.9976 1.5902 2.4847 16 1 11.1345 0.2893 1.7819 17 1 11.6473 2.6577 1.6824 18 1 11.6507 1.5045 3.8157 19 7 2.0184 -0.6907 -1.1961 20 6 2.1471 -0.0184 -2.3571 21 8 1.8590 1.1584 -2.4115 22 6 2.6500 -0.7287 -3.5873 23 6 2.7011 0.2397 -4.7409 24 6 1.6848 0.5294 -5.6800 25 7 2.1762 1.4228 -6.4893 26 8 3.3113 1.7156 -6.1930 27 6 3.7311 1.0347 -5.1174 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7516 -0.1583 2.1370 32 1 1.6053 -1.7198 1.2953 33 1 4.2798 -1.7932 -0.4992 34 1 5.0863 -2.1897 1.0372 35 1 3.4769 -2.8599 0.6780 36 1 6.0901 -0.8582 2.1820 37 1 6.0885 -0.0138 0.6151 38 1 9.5038 3.7182 3.6368 39 1 2.2491 -1.6318 -1.1525 40 1 1.9778 -1.5511 -3.8324 41 1 3.6493 -1.1205 -3.3977 42 1 0.6965 0.0955 -5.7184 43 1 4.7011 1.1023 -4.6473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738793605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:57 Heat of formation + Delta-G solvation = -6.626534 kcal Electronic energy + Delta-G solvation = -27097.456695 eV Core-core repulsion = 23079.867859 eV Total energy + Delta-G solvation = -4017.588836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.11721 -40.30743 -39.30487 -36.55222 -34.86597 -34.47767 -32.48281 -32.45678 -31.73150 -29.60190 -28.79832 -27.36360 -25.73841 -25.27429 -23.33049 -22.69850 -21.41703 -20.57472 -19.40036 -18.14600 -17.84787 -17.73966 -17.19140 -16.82635 -16.36181 -15.98054 -15.57852 -15.27782 -14.98164 -14.83286 -14.16614 -14.08315 -13.69581 -13.62479 -13.37226 -13.27403 -13.02280 -12.88110 -12.66175 -12.52744 -12.35819 -12.20636 -12.06695 -11.83982 -11.47957 -11.26143 -11.09614 -11.04989 -10.78387 -10.59225 -10.12977 -9.83130 -9.59543 -9.49353 -9.32821 -9.10114 -8.62001 -8.25461 -6.53388 -6.24379 -3.95357 1.30132 1.98385 2.44257 2.80539 2.94596 2.99875 3.12767 3.19308 3.23491 3.28624 3.54652 4.02371 4.17127 4.38940 4.42873 4.55652 4.63835 4.73705 4.87051 4.91388 5.00657 5.02144 5.09964 5.10805 5.22444 5.30244 5.33520 5.43404 5.46171 5.47274 5.54446 5.64883 5.75180 5.83254 5.87542 5.97042 6.06080 6.28120 6.51599 7.24838 7.39816 7.56638 8.03709 8.03806 8.32150 8.47222 9.20878 10.83074 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009881 B = 0.002908 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.049915 B = 9625.985830 C =11589.424796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 H 0.096 0.904 4 C 0.111 3.889 5 N -0.624 5.624 6 C 0.078 3.922 7 C 0.533 3.467 8 O -0.511 6.511 9 C -0.149 4.149 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.866 5.866 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.280 1.280 19 N -0.722 5.722 20 C 0.512 3.488 21 O -0.526 6.526 22 C -0.063 4.063 23 C -0.190 4.190 24 C 0.004 3.996 25 N -0.367 5.367 26 O 0.097 5.903 27 C -0.037 4.037 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.268 0.732 39 H 0.396 0.604 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.187 0.813 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.626 -16.123 -13.038 25.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 H 0.114 0.886 4 C -0.013 4.013 5 N -0.360 5.360 6 C -0.065 4.065 7 C 0.321 3.679 8 O -0.385 6.385 9 C -0.300 4.300 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.206 1.206 19 N -0.374 5.374 20 C 0.297 3.703 21 O -0.401 6.401 22 C -0.103 4.103 23 C -0.195 4.195 24 C -0.176 4.176 25 N -0.071 5.071 26 O 0.033 5.967 27 C -0.119 4.119 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.231 0.769 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.204 0.796 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -16.011 -12.990 -13.280 24.524 hybrid contribution 1.971 -2.480 0.035 3.168 sum -14.039 -15.469 -13.245 24.735 Atomic orbital electron populations 1.22098 0.94670 1.01952 1.03068 1.21472 0.94024 0.98821 0.83862 0.88588 1.21749 0.80307 1.01113 0.98110 1.47805 1.05623 1.22225 1.60329 1.21830 0.99473 0.87498 0.97741 1.20373 0.89037 0.81634 0.76836 1.90711 1.74608 1.30504 1.42639 1.23542 0.93548 1.07432 1.05438 1.85459 1.02360 1.21085 1.74557 1.22877 0.91020 1.09748 1.44669 0.90934 1.24998 0.99619 0.94467 0.94518 1.70026 1.34200 1.09891 1.36044 0.86118 0.82843 0.78448 0.78084 1.19628 1.20532 1.20567 1.46031 1.67994 1.13747 1.09670 1.20492 0.77984 0.87513 0.84311 1.90767 1.48840 1.15788 1.84719 1.19884 1.04378 0.96675 0.89385 1.20682 0.94456 1.03919 1.00416 1.24866 1.01862 0.97507 0.93338 1.73859 0.94265 1.15919 1.23094 1.84821 1.22419 1.51389 1.38033 1.25864 1.01885 0.93874 0.90241 0.91196 0.91898 0.92492 0.88236 0.90275 0.93017 0.90389 0.91302 0.89287 0.89435 0.92197 0.76949 0.87469 0.87357 0.79605 0.76655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.48 37.16 0.35 -1.01 16 2 C 0.12 1.29 2.88 -67.93 -0.20 1.09 16 3 H 0.10 1.46 7.58 -51.93 -0.39 1.06 16 4 C 0.11 1.09 5.07 -4.04 -0.02 1.07 16 5 N -0.62 -7.43 2.73 -181.57 -0.50 -7.93 16 6 C 0.08 0.60 9.02 59.85 0.54 1.14 16 7 C 0.53 9.51 7.69 -10.99 -0.08 9.42 16 8 O -0.51 -11.25 15.44 5.55 0.09 -11.16 16 9 C -0.15 -2.89 4.71 36.01 0.17 -2.72 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.53 -14.94 9.50 30.94 0.29 -14.65 16 12 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -25.93 13.22 55.49 0.73 -25.19 16 15 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 N -0.72 -5.88 4.35 -53.81 -0.23 -6.11 16 20 C 0.51 5.24 7.79 -10.99 -0.09 5.15 16 21 O -0.53 -8.18 15.70 5.56 0.09 -8.10 16 22 C -0.06 -0.40 6.28 -29.03 -0.18 -0.58 16 23 C -0.19 -1.75 4.82 -104.42 -0.50 -2.25 16 24 C 0.00 0.04 12.16 -17.06 -0.21 -0.17 16 25 N -0.37 -4.53 12.07 30.36 0.37 -4.16 16 26 O 0.10 1.12 11.20 17.17 0.19 1.32 16 27 C -0.04 -0.34 12.26 29.74 0.36 0.02 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 1.16 7.42 -51.93 -0.39 0.77 16 32 H 0.08 0.50 7.89 -51.92 -0.41 0.09 16 33 H 0.05 0.33 7.39 -51.93 -0.38 -0.06 16 34 H 0.08 0.66 6.44 -51.93 -0.33 0.32 16 35 H 0.07 0.31 7.89 -51.93 -0.41 -0.10 16 36 H 0.09 1.57 7.40 -51.91 -0.38 1.19 16 37 H 0.09 1.58 8.11 -51.91 -0.42 1.16 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.40 1.92 7.07 -40.82 -0.29 1.63 16 40 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.19 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.22 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 383.45 15.07 5.78 5.78 Total: -1.00 -39.20 383.45 -6.29 -45.49 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.91 Total: -0.58 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 0.35 Total: -1.54 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.37 Total: -43.39 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.37 Total: -17.94 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.20 -6.29 -45.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738793605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.861 kcal (2) G-P(sol) polarization free energy of solvation -39.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds