Wall clock time and date at job start Tue Mar 31 2020 23:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47411 * 2 1 4 4 C 1.46496 * 120.00268 * 89.99688 * 3 2 1 5 5 C 1.53004 * 109.47241 * 270.00348 * 4 3 2 6 6 N 1.46502 * 109.46923 * 179.97438 * 5 4 3 7 7 C 1.34772 * 119.99562 * 179.97438 * 6 5 4 8 8 O 1.21607 * 120.00378 * 359.97438 * 7 6 5 9 9 C 1.47420 * 119.99827 * 179.97438 * 7 6 5 10 10 C 1.36086 * 126.45220 * 179.71452 * 9 7 6 11 11 O 1.34260 * 106.95453 * 180.26567 * 10 9 7 12 12 C 1.34048 * 108.22697 * 359.97438 * 11 10 9 13 13 C 1.50700 * 125.38057 * 180.02562 * 12 11 10 14 14 N 1.29937 * 109.24116 * 0.02562 * 12 11 10 15 15 C 1.34787 * 119.99844 * 269.99903 * 3 2 1 16 16 O 1.21279 * 119.99481 * 179.97438 * 15 3 2 17 17 C 1.50695 * 119.99902 * 359.97438 * 15 3 2 18 18 S 1.81000 * 109.46900 * 179.97438 * 17 15 3 19 19 C 1.76207 * 99.99830 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00189 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99806 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99899 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99786 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47250 * 89.99625 * 23 21 19 25 25 H 1.48498 * 109.46752 * 209.99623 * 23 21 19 26 26 H 1.48501 * 109.46953 * 329.99355 * 23 21 19 27 27 H 1.09002 * 109.47315 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47014 * 300.00284 * 1 2 3 29 29 H 1.09000 * 109.47106 * 60.00239 * 1 2 3 30 30 H 1.09008 * 109.47063 * 239.99636 * 2 1 3 31 31 H 1.09005 * 109.47078 * 120.00492 * 2 1 3 32 32 H 1.08999 * 109.47410 * 149.99990 * 4 3 2 33 33 H 1.09001 * 109.46960 * 30.00095 * 4 3 2 34 34 H 1.08994 * 109.46999 * 59.99918 * 5 4 3 35 35 H 1.09001 * 109.46937 * 299.99761 * 5 4 3 36 36 H 0.96996 * 119.99907 * 359.97438 * 6 5 4 37 37 H 1.08008 * 126.52203 * 0.26207 * 10 9 7 38 38 H 1.09005 * 109.46638 * 269.96149 * 13 12 11 39 39 H 1.08996 * 109.46999 * 29.96189 * 13 12 11 40 40 H 1.08998 * 109.47087 * 149.96379 * 13 12 11 41 41 H 1.08995 * 109.47289 * 300.00230 * 17 15 3 42 42 H 1.09004 * 109.47214 * 60.00099 * 17 15 3 43 43 H 0.96998 * 119.99730 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 1.2687 5 6 0.9875 2.7931 1.7103 6 7 1.2316 3.4832 2.9793 7 6 0.2436 4.1903 3.5627 8 8 -0.8503 4.2558 3.0354 9 6 0.4889 4.8843 4.8399 10 6 -0.4067 5.6351 5.5373 11 8 0.2274 6.0842 6.6321 12 6 1.4846 5.6196 6.6088 13 6 2.5343 5.8898 7.6558 14 7 1.6552 4.8995 5.5407 15 6 2.2431 2.0165 -1.1673 16 8 2.6469 3.1600 -1.1672 17 6 1.9924 1.3058 -2.4723 18 16 2.3837 2.4150 -3.8481 19 6 2.0104 1.3589 -5.2083 20 1 1.6553 0.3546 -5.0305 21 6 2.1726 1.8178 -6.5081 22 7 2.6049 3.0421 -6.7247 23 14 1.7761 0.6984 -7.9501 24 1 0.3513 0.8689 -8.3320 25 1 2.6432 1.0506 -9.1031 26 1 2.0189 -0.7141 -7.5615 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.0645 2.7984 1.1384 33 1 2.5506 1.3451 2.0283 34 1 0.1856 2.0665 1.8407 35 1 0.6995 3.5197 0.9506 36 1 2.1042 3.4313 3.3997 37 1 -1.4324 5.8321 5.2622 38 1 3.0874 6.7912 7.3916 39 1 2.0540 6.0289 8.6243 40 1 3.2207 5.0447 7.7086 41 1 2.6229 0.4186 -2.5298 42 1 0.9445 1.0113 -2.5303 43 1 2.7179 3.3629 -7.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745304388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:22 Heat of formation + Delta-G solvation = -49.853405 kcal Electronic energy + Delta-G solvation = -26187.940680 eV Core-core repulsion = 22168.477386 eV Total energy + Delta-G solvation = -4019.463294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.84723 -39.98485 -39.37787 -36.20722 -35.35644 -34.85790 -32.70170 -32.42110 -31.29805 -29.86814 -28.51196 -27.90041 -25.50117 -24.67257 -23.34124 -22.75585 -21.83854 -20.86818 -19.27567 -18.45506 -17.71450 -17.35237 -16.90199 -16.78004 -16.31097 -15.72990 -15.45262 -15.14316 -14.79710 -14.70784 -14.34763 -13.99553 -13.91369 -13.76804 -13.70762 -13.64049 -13.31303 -13.04794 -13.03063 -12.56821 -12.34247 -11.86817 -11.84740 -11.69030 -11.47200 -11.27046 -11.06881 -11.02074 -10.99078 -10.74915 -10.51676 -9.80260 -9.48869 -9.41219 -9.21415 -9.05816 -8.69233 -8.21926 -6.49396 -6.20830 -3.91472 0.71855 1.58869 2.13439 2.57645 3.01062 3.01704 3.08519 3.23023 3.27038 3.30901 3.45289 3.63158 4.20853 4.36148 4.40449 4.65441 4.76710 4.79344 4.83613 4.89133 5.00226 5.04859 5.14152 5.18676 5.21055 5.23290 5.28856 5.36086 5.53648 5.62479 5.65463 5.76786 5.79981 5.90464 5.92819 6.07652 6.11459 6.24744 6.60498 6.96202 7.28973 7.46675 7.60361 7.89936 8.35914 8.51095 9.24430 10.86584 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.001882 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.528760 B =14871.587123 C =15210.426509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 N -0.618 5.618 4 C 0.109 3.891 5 C 0.101 3.899 6 N -0.708 5.708 7 C 0.602 3.398 8 O -0.533 6.533 9 C -0.070 4.070 10 C 0.014 3.986 11 O -0.197 6.197 12 C 0.197 3.803 13 C -0.059 4.059 14 N -0.463 5.463 15 C 0.534 3.466 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.409 0.591 37 H 0.232 0.768 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.242 -1.057 30.219 30.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 N -0.354 5.354 4 C -0.015 4.015 5 C -0.024 4.024 6 N -0.359 5.359 7 C 0.387 3.613 8 O -0.410 6.410 9 C -0.190 4.190 10 C -0.060 4.060 11 O -0.083 6.083 12 C -0.012 4.012 13 C -0.116 4.116 14 N -0.194 5.194 15 C 0.322 3.678 16 O -0.385 6.385 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.244 0.756 37 H 0.248 0.752 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.787 0.511 29.515 29.574 hybrid contribution -1.106 -1.781 -0.637 2.191 sum -2.893 -1.270 28.878 29.050 Atomic orbital electron populations 1.22325 0.95888 1.02358 1.02954 1.21600 0.94576 0.82096 1.03397 1.47898 1.68116 1.14326 1.05045 1.21439 0.96893 0.97310 0.85871 1.21964 0.98753 0.96841 0.84819 1.45616 1.15075 1.51192 1.24013 1.16688 0.84297 0.78279 0.82035 1.90858 1.23785 1.62366 1.63973 1.21773 0.91113 1.06413 0.99729 1.25312 0.99681 0.96303 0.84708 1.84401 1.24511 1.59244 1.40166 1.26363 0.83756 0.94293 0.96785 1.20337 0.92995 1.04869 0.93439 1.70760 1.24770 1.19032 1.04820 1.20412 0.76239 0.86504 0.84602 1.90709 1.43640 1.17385 1.86733 1.23581 1.04890 1.04520 0.97065 1.85416 1.86829 1.17915 0.93363 1.22854 1.51784 1.01465 0.92185 0.90925 1.24995 0.94662 0.95557 0.98381 1.70021 1.42934 1.15641 1.21649 0.86169 0.78415 0.80194 0.80724 1.20276 1.20763 1.19695 0.91484 0.92302 0.91741 0.89657 0.90514 0.89063 0.90153 0.90818 0.90328 0.75557 0.75194 0.88543 0.89077 0.87786 0.89196 0.89085 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 10.24 37.16 0.38 -1.40 16 2 C 0.11 1.10 5.97 -4.05 -0.02 1.07 16 3 N -0.62 -8.39 2.47 -173.69 -0.43 -8.82 16 4 C 0.11 1.25 5.56 -4.04 -0.02 1.22 16 5 C 0.10 1.24 6.00 -4.04 -0.02 1.22 16 6 N -0.71 -8.03 5.55 -61.38 -0.34 -8.37 16 7 C 0.60 7.78 7.81 -12.52 -0.10 7.68 16 8 O -0.53 -8.45 16.89 5.27 0.09 -8.36 16 9 C -0.07 -0.77 6.99 -83.02 -0.58 -1.35 16 10 C 0.01 0.12 11.94 29.96 0.36 0.48 16 11 O -0.20 -1.58 10.73 6.51 0.07 -1.51 16 12 C 0.20 1.49 8.30 -13.08 -0.11 1.38 16 13 C -0.06 -0.17 10.51 36.01 0.38 0.21 16 14 N -0.46 -4.59 11.06 -7.65 -0.08 -4.68 16 15 C 0.53 10.02 7.69 -10.98 -0.08 9.94 16 16 O -0.51 -11.57 15.44 5.56 0.09 -11.48 16 17 C -0.15 -3.03 4.71 36.00 0.17 -2.86 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.24 9.50 30.94 0.29 -14.94 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 23 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.58 6.26 -51.93 -0.33 0.26 16 29 H 0.06 0.78 7.22 -51.93 -0.38 0.41 16 30 H 0.09 0.90 6.44 -51.92 -0.33 0.56 16 31 H 0.08 0.59 7.89 -51.93 -0.41 0.18 16 32 H 0.09 1.18 7.42 -51.93 -0.39 0.79 16 33 H 0.08 0.66 7.89 -51.93 -0.41 0.25 16 34 H 0.07 0.89 6.26 -51.93 -0.33 0.56 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.41 3.88 8.20 -40.82 -0.33 3.54 16 37 H 0.23 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.09 1.67 7.40 -51.92 -0.38 1.29 16 42 H 0.09 1.72 7.19 -51.91 -0.37 1.35 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -37.99 384.61 -6.51 -44.50 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.74 Total: 1.26 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 0.54 Total: 4.65 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.12 Total: -47.39 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.24 Total: -21.36 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.99 -6.51 -44.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745304388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.354 kcal (2) G-P(sol) polarization free energy of solvation -37.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds