Wall clock time and date at job start Tue Mar 31 2020 23:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47180 * 2 1 4 4 C 1.46503 * 119.99959 * 266.82535 * 3 2 1 5 5 C 1.53006 * 109.47356 * 270.00346 * 4 3 2 6 6 N 1.46494 * 109.47312 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99955 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00183 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99681 * 180.02562 * 7 6 5 10 10 S 1.81005 * 109.46823 * 180.02562 * 9 7 6 11 11 C 1.76205 * 99.99905 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99659 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99902 * 179.97438 * 11 10 9 14 14 N 1.31634 * 120.00126 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00000 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47024 * 89.99990 * 15 13 11 17 17 H 1.48507 * 109.46851 * 210.00052 * 15 13 11 18 18 H 1.48498 * 109.47234 * 329.99752 * 15 13 11 19 19 C 1.34769 * 120.00535 * 86.82665 * 3 2 1 20 20 O 1.21494 * 120.00449 * 174.69604 * 19 3 2 21 21 C 1.48334 * 119.99738 * 354.42166 * 19 3 2 22 22 C 1.42268 * 126.94120 * 174.51704 * 21 19 3 23 23 C 1.35319 * 103.92274 * 180.02562 * 22 21 19 24 24 C 1.50700 * 126.66195 * 180.02562 * 23 22 21 25 25 O 1.34012 * 106.66761 * 359.97438 * 23 22 21 26 26 N 1.20904 * 111.84523 * 359.71202 * 25 23 22 27 27 H 1.08999 * 109.46859 * 300.00092 * 1 2 3 28 28 H 1.08994 * 109.46958 * 60.00096 * 1 2 3 29 29 H 1.09001 * 109.46928 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46859 * 239.99908 * 2 1 3 31 31 H 1.08998 * 109.47339 * 120.00203 * 2 1 3 32 32 H 1.09002 * 109.47115 * 30.00197 * 4 3 2 33 33 H 1.08994 * 109.47409 * 150.00125 * 4 3 2 34 34 H 1.09000 * 109.46414 * 299.99770 * 5 4 3 35 35 H 1.09000 * 109.46705 * 59.99303 * 5 4 3 36 36 H 0.96998 * 119.99883 * 0.02562 * 6 5 4 37 37 H 1.09000 * 109.47258 * 299.99297 * 9 7 6 38 38 H 1.08994 * 109.47640 * 59.99964 * 9 7 6 39 39 H 0.97002 * 120.00455 * 180.02562 * 14 13 11 40 40 H 1.08004 * 128.04071 * 0.02562 * 22 21 19 41 41 H 1.08998 * 109.47588 * 89.99856 * 24 23 22 42 42 H 1.08998 * 109.46853 * 209.99719 * 24 23 22 43 43 H 1.08997 * 109.47292 * 329.99670 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3288 2.0484 -1.2668 5 6 3.7948 1.8005 -1.6280 6 7 4.1050 2.4671 -2.8951 7 6 5.3467 2.3858 -3.4130 8 8 6.2073 1.7612 -2.8299 9 6 5.6659 3.0721 -4.7161 10 16 7.4001 2.7787 -5.1434 11 6 7.4952 3.6660 -6.6628 12 1 6.6232 4.1746 -7.0465 13 6 8.6908 3.7114 -7.3663 14 7 9.7538 3.0919 -6.8983 15 14 8.7914 4.6515 -8.9773 16 1 9.1850 6.0575 -8.7062 17 1 9.8030 4.0155 -9.8592 18 1 7.4664 4.6287 -9.6474 19 6 2.1821 2.0381 1.1653 20 8 2.6773 3.1476 1.1729 21 6 1.7523 1.4091 2.4380 22 6 1.9511 1.9162 3.7523 23 6 1.3828 0.9831 4.5507 24 6 1.3044 1.0134 6.0554 25 8 0.9024 0.0274 3.7434 26 7 1.1077 0.2775 2.5784 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6884 1.6500 -2.0537 33 1 2.1558 3.1197 -1.1652 34 1 4.4352 2.1989 -0.8411 35 1 3.9678 0.7291 -1.7296 36 1 3.4171 2.9676 -3.3609 37 1 5.0258 2.6734 -5.5031 38 1 5.4926 4.1434 -4.6146 39 1 10.5895 3.1239 -7.3897 40 1 2.4416 2.8329 4.0449 41 1 0.3883 1.5186 6.3614 42 1 1.3026 -0.0066 6.4397 43 1 2.1655 1.5501 6.4534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758990120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:56 Heat of formation + Delta-G solvation = -0.115078 kcal Electronic energy + Delta-G solvation = -26188.385852 eV Core-core repulsion = 22171.079374 eV Total energy + Delta-G solvation = -4017.306478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.52844 -40.39269 -39.06493 -36.73945 -34.95046 -34.48221 -33.65992 -32.41369 -31.47354 -29.95645 -28.37626 -28.17067 -25.54233 -25.18944 -23.88093 -23.26467 -22.34678 -20.49306 -19.36942 -18.30253 -17.90619 -17.83325 -17.32698 -16.74023 -16.29040 -15.80556 -15.40214 -15.10575 -14.80944 -14.78832 -14.33842 -14.21324 -14.10622 -13.92961 -13.83474 -13.79875 -13.22109 -13.04778 -12.92883 -12.56085 -12.37592 -12.29077 -12.07223 -11.84223 -11.53727 -11.38795 -11.05000 -11.01072 -10.85699 -10.75735 -10.59994 -9.85222 -9.80873 -9.46776 -9.18429 -9.05744 -8.90409 -8.21949 -6.48445 -6.20137 -3.90735 0.65938 1.21160 2.20575 2.51463 2.72288 3.09232 3.11342 3.23629 3.29429 3.33868 3.43698 3.77530 3.92992 4.21781 4.42622 4.48722 4.62694 4.62929 4.67429 4.78637 4.82917 4.91233 5.04201 5.07441 5.14568 5.14972 5.19184 5.22138 5.36812 5.46947 5.51320 5.62623 5.66540 5.83139 5.85905 5.91137 6.08052 6.15448 6.58192 6.79423 7.46010 7.60931 7.66547 7.69757 8.36682 8.61683 9.25051 10.87293 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029950 B = 0.001706 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.679062 B =16406.251898 C =16781.524253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 N -0.595 5.595 4 C 0.108 3.892 5 C 0.107 3.893 6 N -0.737 5.737 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.597 3.403 20 O -0.513 6.513 21 C -0.022 4.022 22 C -0.184 4.184 23 C -0.031 4.031 24 C -0.075 4.075 25 O 0.116 5.884 26 N -0.324 5.324 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.268 0.732 40 H 0.181 0.819 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.406 -5.859 23.581 34.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.328 5.328 4 C -0.015 4.015 5 C -0.018 4.018 6 N -0.392 5.392 7 C 0.319 3.681 8 O -0.390 6.390 9 C -0.303 4.303 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.383 3.617 20 O -0.386 6.386 21 C -0.181 4.181 22 C -0.207 4.207 23 C -0.094 4.094 24 C -0.132 4.132 25 O 0.042 5.958 26 N -0.026 5.026 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.232 0.768 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.198 0.802 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.938 -7.242 23.613 33.707 hybrid contribution -0.919 2.149 -1.631 2.850 sum -23.856 -5.092 21.982 32.837 Atomic orbital electron populations 1.22109 0.95134 1.02639 1.02051 1.21853 0.95227 0.81038 1.04068 1.47703 1.64801 1.14982 1.05363 1.21670 0.95671 0.99566 0.84620 1.21556 0.95203 0.98192 0.86873 1.45824 1.12948 1.56268 1.24170 1.20312 0.81223 0.80182 0.86377 1.90707 1.46183 1.40890 1.61214 1.23525 1.07623 1.02973 0.96200 1.85417 1.00309 1.69584 1.28081 1.22873 0.99712 1.37892 1.07909 0.90900 1.24994 0.94692 0.95549 0.98357 1.70022 1.01052 1.40571 1.38647 0.86162 0.78059 0.79562 0.81671 1.20268 1.20756 1.19706 1.16981 0.78458 0.84718 0.81579 1.90845 1.42865 1.19017 1.85916 1.23391 1.03632 0.94444 0.96585 1.22461 1.05499 1.02952 0.89767 1.24504 0.99175 0.89188 0.96506 1.20397 1.04610 1.04845 0.83395 1.84794 1.58679 1.40935 1.11442 1.74397 1.15279 1.15930 0.97029 0.92201 0.92649 0.91170 0.89672 0.89115 0.89238 0.88878 0.91065 0.91478 0.76763 0.89145 0.89106 0.92190 0.80181 0.89112 0.89491 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.69 37.16 0.36 -0.76 16 2 C 0.10 0.80 5.67 -4.04 -0.02 0.78 16 3 N -0.60 -5.98 2.48 -174.62 -0.43 -6.41 16 4 C 0.11 1.03 5.47 -4.04 -0.02 1.00 16 5 C 0.11 1.38 6.00 -4.04 -0.02 1.35 16 6 N -0.74 -10.20 5.56 -60.30 -0.33 -10.53 16 7 C 0.53 10.30 7.85 -10.99 -0.09 10.22 16 8 O -0.52 -12.23 15.86 5.56 0.09 -12.14 16 9 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.54 -15.44 9.50 30.94 0.29 -15.14 16 12 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.44 13.22 55.49 0.73 -25.70 16 15 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 C 0.60 7.18 7.67 -12.11 -0.09 7.09 16 20 O -0.51 -7.70 16.59 5.37 0.09 -7.61 16 21 C -0.02 -0.22 6.67 -82.53 -0.55 -0.77 16 22 C -0.18 -1.47 10.93 -39.07 -0.43 -1.89 16 23 C -0.03 -0.18 7.47 -35.35 -0.26 -0.44 16 24 C -0.08 -0.13 10.45 36.01 0.38 0.25 16 25 O 0.12 0.86 11.18 17.25 0.19 1.06 16 26 N -0.32 -2.91 7.12 33.29 0.24 -2.67 16 27 H 0.06 0.49 6.52 -51.93 -0.34 0.15 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 31 H 0.09 0.79 5.81 -51.93 -0.30 0.48 16 32 H 0.09 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.09 0.93 7.50 -51.93 -0.39 0.55 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.40 4.12 8.47 -40.82 -0.35 3.77 16 37 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 38 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.18 1.22 8.06 -52.48 -0.42 0.80 16 41 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 43 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -37.92 384.33 -7.19 -45.11 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.98 Total: -0.37 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -0.33 Total: 0.78 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.20 Total: -45.32 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.37 Total: -18.69 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.92 -7.19 -45.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758990120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.995 kcal (2) G-P(sol) polarization free energy of solvation -37.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds