Wall clock time and date at job start Tue Mar 31 2020 23:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.46970 * 2 1 4 4 C 1.46501 * 119.99786 * 90.00216 * 3 2 1 5 5 C 1.52999 * 109.47491 * 269.99946 * 4 3 2 6 6 N 1.46492 * 109.47623 * 180.02562 * 5 4 3 7 7 C 1.34778 * 120.00556 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99600 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00291 * 180.02562 * 7 6 5 10 10 C 1.50702 * 109.46965 * 179.97438 * 9 7 6 11 11 C 1.41385 * 128.00459 * 90.00055 * 10 9 7 12 12 N 1.30179 * 106.39389 * 179.97438 * 11 10 9 13 13 O 1.20927 * 111.60367 * 359.97438 * 12 11 10 14 14 C 1.34037 * 111.56699 * 359.97438 * 13 12 11 15 15 C 1.34771 * 120.00470 * 270.00008 * 3 2 1 16 16 O 1.21279 * 120.00479 * 179.97438 * 15 3 2 17 17 C 1.50703 * 119.99851 * 0.02562 * 15 3 2 18 18 S 1.80998 * 109.47027 * 179.97438 * 17 15 3 19 19 C 1.76205 * 99.99671 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00124 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99583 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99625 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00284 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46842 * 89.99639 * 23 21 19 25 25 H 1.48498 * 109.46968 * 209.99953 * 23 21 19 26 26 H 1.48494 * 109.46958 * 330.00054 * 23 21 19 27 27 H 1.09004 * 109.47066 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47349 * 299.99308 * 1 2 3 29 29 H 1.08990 * 109.47476 * 59.99824 * 1 2 3 30 30 H 1.09002 * 109.46647 * 240.00442 * 2 1 3 31 31 H 1.09000 * 109.47129 * 120.00588 * 2 1 3 32 32 H 1.09003 * 109.47105 * 149.99615 * 4 3 2 33 33 H 1.09002 * 109.47420 * 29.99855 * 4 3 2 34 34 H 1.09005 * 109.46733 * 59.99907 * 5 4 3 35 35 H 1.08998 * 109.47143 * 300.00561 * 5 4 3 36 36 H 0.97010 * 119.99963 * 359.97438 * 6 5 4 37 37 H 1.08997 * 109.47662 * 59.99660 * 9 7 6 38 38 H 1.08998 * 109.46934 * 299.99061 * 9 7 6 39 39 H 1.07993 * 126.80227 * 359.70041 * 11 10 9 40 40 H 1.08002 * 126.77549 * 180.02562 * 14 13 12 41 41 H 1.09006 * 109.46769 * 299.99046 * 17 15 3 42 42 H 1.08999 * 109.47363 * 59.99302 * 17 15 3 43 43 H 0.96997 * 119.99484 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 0.9875 2.7930 1.7106 6 7 1.2318 3.4840 2.9789 7 6 0.2436 4.1904 3.5629 8 8 -0.8478 4.2543 3.0379 9 6 0.4952 4.9017 4.8674 10 6 -0.7607 5.6120 5.3025 11 6 -1.8072 5.1129 6.1117 12 7 -2.6774 6.0749 6.2215 13 8 -2.3284 7.0622 5.6167 14 6 -1.1473 6.8769 5.0107 15 6 2.2429 2.0166 -1.1671 16 8 2.6467 3.1602 -1.1671 17 6 1.9913 1.3065 -2.4723 18 16 2.3827 2.4157 -3.8479 19 6 2.0096 1.3596 -5.2081 20 1 1.6545 0.3552 -5.0305 21 6 2.1710 1.8189 -6.5080 22 7 1.8917 1.0301 -7.5242 23 14 2.7845 3.5563 -6.8153 24 1 4.2672 3.5504 -6.8975 25 1 2.2199 4.0620 -8.0923 26 1 2.3541 4.4376 -5.7004 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.0645 2.7984 1.1385 33 1 2.5506 1.3451 2.0284 34 1 0.1856 2.0662 1.8409 35 1 0.6994 3.5196 0.9510 36 1 2.1048 3.4326 3.3990 37 1 1.2965 5.6289 4.7362 38 1 0.7842 4.1757 5.6272 39 1 -1.8738 4.1273 6.5481 40 1 -0.6102 7.5944 4.4081 41 1 2.6213 0.4188 -2.5303 42 1 0.9432 1.0126 -2.5298 43 1 2.0049 1.3510 -8.4325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759021234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:31 Heat of formation + Delta-G solvation = -8.241475 kcal Electronic energy + Delta-G solvation = -26240.267873 eV Core-core repulsion = 22222.609008 eV Total energy + Delta-G solvation = -4017.658865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.25282 -40.21444 -39.62008 -36.39126 -35.18246 -34.81216 -32.52905 -32.45869 -31.54671 -30.12276 -29.47548 -27.67215 -25.63483 -23.61531 -23.46412 -23.14963 -22.09489 -20.83240 -19.31133 -18.30045 -17.95909 -17.76992 -17.29284 -16.97365 -16.48643 -16.04012 -15.77484 -15.29862 -15.08528 -14.96651 -14.41618 -14.03710 -13.88400 -13.86344 -13.61012 -13.46985 -13.38319 -13.16819 -12.82853 -12.64175 -12.39253 -12.02152 -11.95139 -11.64050 -11.57252 -11.28637 -11.12348 -11.01000 -10.73061 -10.62677 -10.32617 -9.88419 -9.76730 -9.57976 -9.39406 -9.02568 -8.83722 -8.52381 -6.94913 -6.30968 -4.03085 1.15884 1.85157 2.28995 2.48016 2.80368 2.87345 2.96847 3.26449 3.31379 3.48759 3.56848 3.89876 4.27072 4.30615 4.30861 4.45691 4.49247 4.66306 4.69937 4.75796 4.83402 4.89574 5.05644 5.08104 5.10859 5.14229 5.19962 5.27586 5.28888 5.52052 5.62871 5.63548 5.66206 5.76231 5.81558 5.92801 6.00850 6.14978 6.46304 7.09799 7.29811 7.87390 7.91028 7.92025 8.31948 8.39379 9.15137 10.78173 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016676 B = 0.002017 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.686959 B =13879.211440 C =14720.487600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.105 3.895 3 N -0.616 5.616 4 C 0.109 3.891 5 C 0.101 3.899 6 N -0.727 5.727 7 C 0.511 3.489 8 O -0.528 6.528 9 C -0.062 4.062 10 C -0.189 4.189 11 C 0.004 3.996 12 N -0.366 5.366 13 O 0.097 5.903 14 C -0.040 4.040 15 C 0.534 3.466 16 O -0.514 6.514 17 C -0.122 4.122 18 S -0.144 6.144 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.401 0.599 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.188 0.812 40 H 0.216 0.784 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.280 2.692 29.190 29.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.018 4.018 3 N -0.352 5.352 4 C -0.015 4.015 5 C -0.024 4.024 6 N -0.380 5.380 7 C 0.296 3.704 8 O -0.403 6.403 9 C -0.102 4.102 10 C -0.194 4.194 11 C -0.175 4.175 12 N -0.070 5.070 13 O 0.033 5.967 14 C -0.122 4.122 15 C 0.322 3.678 16 O -0.388 6.388 17 C -0.272 4.272 18 S 0.083 5.917 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.235 0.765 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.205 0.795 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.122 4.528 29.205 29.575 hybrid contribution 0.923 -1.271 -0.629 1.692 sum -0.199 3.257 28.576 28.761 Atomic orbital electron populations 1.22322 0.95735 1.02553 1.02941 1.21637 0.94687 0.81876 1.03572 1.47862 1.67910 1.14424 1.05018 1.21458 0.96972 0.97252 0.85805 1.21890 0.98495 0.96789 0.85212 1.45834 1.14911 1.52745 1.24542 1.20512 0.84452 0.79063 0.86346 1.90775 1.23968 1.60911 1.64680 1.19872 0.94864 1.00038 0.95464 1.20705 0.99609 0.94997 1.04079 1.24902 0.91094 1.00738 1.00788 1.73874 1.22738 0.95558 1.14792 1.84823 1.31318 1.32324 1.48213 1.25814 0.88004 0.98883 0.99530 1.20374 0.76289 0.86484 0.84690 1.90699 1.43924 1.17374 1.86796 1.23342 1.05521 1.03324 0.95011 1.84796 1.88079 1.21281 0.97568 1.22294 1.51839 1.01854 0.90844 0.89371 1.24719 0.93777 0.97943 0.94887 1.69938 1.46513 1.36255 0.98883 0.86734 0.80223 0.85036 0.79860 1.19215 1.19928 1.15932 0.91310 0.92318 0.91738 0.89534 0.90372 0.89167 0.90148 0.91043 0.90681 0.76497 0.87203 0.87249 0.79487 0.76743 0.88468 0.88347 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 10.24 37.16 0.38 -1.26 16 2 C 0.11 0.96 5.98 -4.04 -0.02 0.94 16 3 N -0.62 -7.35 2.47 -173.69 -0.43 -7.77 16 4 C 0.11 1.00 5.56 -4.04 -0.02 0.98 16 5 C 0.10 1.02 6.00 -4.05 -0.02 0.99 16 6 N -0.73 -5.25 5.56 -60.30 -0.33 -5.59 16 7 C 0.51 4.58 7.82 -10.99 -0.09 4.49 16 8 O -0.53 -7.54 16.03 5.55 0.09 -7.45 16 9 C -0.06 -0.30 6.28 -29.04 -0.18 -0.48 16 10 C -0.19 -1.44 4.82 -104.42 -0.50 -1.94 16 11 C 0.00 0.04 12.16 -17.06 -0.21 -0.17 16 12 N -0.37 -4.00 12.07 30.36 0.37 -3.63 16 13 O 0.10 0.96 11.20 17.18 0.19 1.15 16 14 C -0.04 -0.30 12.26 29.74 0.36 0.07 16 15 C 0.53 9.07 7.69 -10.99 -0.08 8.99 16 16 O -0.51 -10.53 15.44 5.56 0.09 -10.44 16 17 C -0.12 -2.29 4.71 36.01 0.17 -2.12 16 18 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 19 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 20 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 21 C 0.10 2.77 5.50 -17.42 -0.10 2.68 16 22 N -0.88 -26.33 13.97 55.49 0.78 -25.55 16 23 Si 0.86 21.64 27.74 -169.99 -4.72 16.93 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.24 -5.95 6.74 56.52 0.38 -5.56 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.53 6.26 -51.93 -0.33 0.21 16 29 H 0.06 0.74 7.22 -51.93 -0.37 0.36 16 30 H 0.09 0.82 6.44 -51.93 -0.33 0.49 16 31 H 0.08 0.50 7.89 -51.93 -0.41 0.09 16 32 H 0.09 0.93 7.42 -51.93 -0.39 0.54 16 33 H 0.08 0.47 7.89 -51.93 -0.41 0.06 16 34 H 0.07 0.75 6.26 -51.93 -0.33 0.43 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.40 1.44 8.47 -40.82 -0.35 1.09 16 37 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.19 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.22 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.10 1.69 7.40 -51.91 -0.38 1.30 16 42 H 0.10 1.76 7.18 -51.92 -0.37 1.38 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -38.81 380.52 -6.02 -44.82 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.78 Total: -1.26 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 0.00 Total: -1.36 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.38 Total: -42.55 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.37 Total: -16.74 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.72 Total: 16.93 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.81 -6.02 -44.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759021234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.582 kcal (2) G-P(sol) polarization free energy of solvation -38.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds