Wall clock time and date at job start Tue Mar 31 2020 23:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46767 * 124.34632 * 2 1 4 4 C 1.54480 * 105.47108 * 163.00391 * 3 2 1 5 5 H 1.09004 * 110.96676 * 267.25563 * 4 3 2 6 6 C 1.50700 * 110.96612 * 143.53325 * 4 3 2 7 7 O 1.21282 * 120.00222 * 3.08853 * 6 4 3 8 8 N 1.34780 * 120.00120 * 183.08581 * 6 4 3 9 9 C 1.47067 * 136.05152 * 359.63028 * 8 6 4 10 10 C 1.53497 * 87.98534 * 153.13820 * 9 8 6 11 11 N 1.46502 * 114.38449 * 272.46941 * 10 9 8 12 12 C 1.34780 * 119.99875 * 248.68594 * 11 10 9 13 13 O 1.21278 * 120.00070 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00213 * 179.97438 * 12 11 10 15 15 S 1.80999 * 109.47221 * 179.97438 * 14 12 11 16 16 C 1.76206 * 99.99870 * 180.02562 * 15 14 12 17 17 H 1.07993 * 120.00029 * 359.97438 * 16 15 14 18 18 C 1.38800 * 119.99674 * 180.02562 * 16 15 14 19 19 N 1.31626 * 120.00062 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99570 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47373 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46949 * 119.99839 * 20 18 16 23 23 H 1.48497 * 109.46812 * 239.99666 * 20 18 16 24 24 C 1.47066 * 136.06263 * 180.02562 * 8 6 4 25 25 C 1.54625 * 101.80050 * 25.39396 * 4 3 2 26 26 C 1.34418 * 124.35336 * 180.02562 * 2 1 3 27 27 O 1.21286 * 124.93805 * 0.39506 * 26 2 1 28 28 H 1.08999 * 109.47130 * 90.00702 * 1 2 3 29 29 H 1.09001 * 109.46556 * 210.00330 * 1 2 3 30 30 H 1.08995 * 109.47277 * 330.00146 * 1 2 3 31 31 H 1.09001 * 110.24602 * 44.00273 * 3 2 1 32 32 H 1.08999 * 110.31774 * 282.04258 * 3 2 1 33 33 H 1.09007 * 113.46858 * 267.91303 * 9 8 6 34 34 H 1.08993 * 113.47208 * 38.35639 * 9 8 6 35 35 H 1.08999 * 114.20985 * 139.65426 * 10 9 8 36 36 H 0.96997 * 120.00285 * 68.67637 * 11 10 9 37 37 H 1.08997 * 109.46861 * 300.00031 * 14 12 11 38 38 H 1.09006 * 109.46814 * 59.99851 * 14 12 11 39 39 H 0.97000 * 119.99621 * 180.02562 * 19 18 16 40 40 H 1.09005 * 113.46156 * 321.64401 * 24 8 6 41 41 H 1.08998 * 113.46839 * 92.07769 * 24 8 6 42 42 H 1.09008 * 110.48358 * 93.89684 * 25 4 3 43 43 H 1.08993 * 110.48475 * 216.54068 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7011 0.7487 0.4352 5 1 3.8275 0.8452 1.5136 6 6 4.7715 1.5125 -0.3010 7 8 4.4641 2.3994 -1.0691 8 7 6.0703 1.2102 -0.1058 9 6 6.8218 0.2474 0.7135 10 6 7.9389 0.3074 -0.3375 11 7 7.7794 -0.6389 -1.4445 12 6 8.6293 -1.6773 -1.5711 13 8 9.5264 -1.8279 -0.7689 14 6 8.4649 -2.6511 -2.7094 15 16 9.7496 -3.9219 -2.6064 16 6 9.3310 -4.8949 -4.0146 17 1 8.4892 -4.6175 -4.6317 18 6 10.0825 -6.0184 -4.3301 19 7 11.1081 -6.3567 -3.5777 20 14 9.6382 -7.0502 -5.8226 21 1 8.4527 -6.4619 -6.4960 22 1 10.7839 -7.0733 -6.7671 23 1 9.3247 -8.4360 -5.3906 24 6 7.3600 1.7023 -0.6131 25 6 3.6905 -0.7379 0.0102 26 6 2.2235 -1.1097 -0.0005 27 8 1.7947 -2.2442 -0.0079 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.8985 1.9382 0.7104 32 1 2.3305 1.6446 -0.9997 33 1 7.1184 0.6427 1.6851 34 1 6.3436 -0.7295 0.7834 35 1 8.9457 0.3161 0.0802 36 1 7.0621 -0.5183 -2.0861 37 1 7.4832 -3.1204 -2.6470 38 1 8.5544 -2.1204 -3.6573 39 1 11.6335 -7.1416 -3.7984 40 1 7.3393 1.9625 -1.6714 41 1 7.7997 2.4848 0.0054 42 1 4.1202 -0.8533 -0.9850 43 1 4.2335 -1.3455 0.7340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759177864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:36 Heat of formation + Delta-G solvation = -54.127613 kcal Electronic energy + Delta-G solvation = -26880.579022 eV Core-core repulsion = 22860.930384 eV Total energy + Delta-G solvation = -4019.648637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.46646 -40.52660 -39.09938 -38.04126 -36.55288 -33.77489 -33.34379 -32.45202 -30.26385 -28.72442 -28.13094 -27.19801 -26.36248 -25.51494 -23.67065 -21.83654 -20.63187 -20.01035 -19.28576 -18.10620 -17.80981 -17.15852 -16.81515 -16.71033 -16.19384 -15.91932 -15.56975 -15.43280 -14.97067 -14.82222 -14.51136 -14.17185 -13.98190 -13.89708 -13.59113 -13.32818 -13.19093 -13.12774 -12.83611 -12.68860 -12.56735 -12.50191 -12.05896 -11.94657 -11.76652 -11.35332 -11.08038 -11.04747 -10.77986 -10.49422 -10.06794 -9.84223 -9.62985 -9.26032 -9.16148 -9.11152 -9.06844 -8.28705 -6.53870 -6.24457 -3.95343 2.05256 2.20378 2.24052 2.61813 2.84244 2.86776 3.21015 3.25923 3.30813 3.56324 3.63692 3.76841 3.97600 4.11497 4.17979 4.37652 4.45975 4.54365 4.81121 4.88318 4.89449 4.92878 4.98254 5.03120 5.10007 5.11360 5.11867 5.19302 5.22751 5.31395 5.35268 5.43870 5.45001 5.70443 5.81418 6.02511 6.08091 6.41620 6.63160 7.19487 7.49842 7.58284 7.61883 7.76668 8.33220 8.42455 9.21597 10.83010 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011808 B = 0.002542 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.623522 B =11014.257294 C =12725.556058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.626 5.626 3 C 0.118 3.882 4 C -0.119 4.119 5 H 0.119 0.881 6 C 0.556 3.444 7 O -0.534 6.534 8 N -0.644 5.644 9 C 0.078 3.922 10 C 0.114 3.886 11 N -0.719 5.719 12 C 0.538 3.462 13 O -0.511 6.511 14 C -0.155 4.155 15 S -0.058 6.058 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.096 3.904 25 C -0.143 4.143 26 C 0.519 3.481 27 O -0.523 6.523 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.401 0.599 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.268 0.732 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.375 19.810 10.533 27.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.361 5.361 3 C -0.005 4.005 4 C -0.140 4.140 5 H 0.137 0.863 6 C 0.345 3.655 7 O -0.410 6.410 8 N -0.380 5.380 9 C -0.046 4.046 10 C 0.007 3.993 11 N -0.373 5.373 12 C 0.325 3.675 13 O -0.384 6.384 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.683 4.683 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.205 1.205 24 C -0.027 4.027 25 C -0.184 4.184 26 C 0.306 3.694 27 O -0.399 6.399 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.148 0.852 36 H 0.235 0.765 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.128 0.872 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.447 19.338 11.436 27.265 hybrid contribution -1.726 -0.281 -2.053 2.697 sum -17.173 19.057 9.383 27.316 Atomic orbital electron populations 1.21567 0.77546 1.03219 1.02202 1.48189 1.06770 1.07172 1.73960 1.21979 0.87686 0.86924 1.03892 1.22175 0.94072 0.95512 1.02272 0.86348 1.19584 0.81104 0.82853 0.81951 1.90746 1.80988 1.31941 1.37356 1.49655 1.03843 1.38783 1.45691 1.23790 0.90687 0.93867 0.96248 1.22065 1.00097 0.88663 0.88523 1.45646 1.34294 1.27756 1.29562 1.20380 0.80602 0.80460 0.86072 1.90712 1.31890 1.72813 1.43034 1.23543 1.07290 1.01135 0.98573 1.85372 1.34864 1.24488 1.38436 1.22898 1.18433 1.13716 1.13291 0.90840 1.24991 0.94503 0.96657 0.97412 1.70019 1.17055 1.25678 1.37516 0.86113 0.78476 0.79623 0.81280 1.19593 1.20554 1.20538 1.23466 0.80433 0.96894 1.01941 1.22359 0.95702 0.94644 1.05667 1.20747 0.88846 0.84428 0.75356 1.90773 1.78362 1.20951 1.49786 0.92356 0.90492 0.90863 0.89622 0.88978 0.88138 0.89437 0.85233 0.76453 0.89056 0.89057 0.92204 0.89552 0.88081 0.87179 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 10.96 59.85 0.66 1.27 16 2 N -0.63 -5.19 3.33 -180.26 -0.60 -5.79 16 3 C 0.12 0.78 6.69 -3.12 -0.02 0.76 16 4 C -0.12 -0.76 3.38 -90.14 -0.30 -1.06 16 5 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 6 C 0.56 4.78 7.31 -10.98 -0.08 4.70 16 7 O -0.53 -6.43 16.31 5.56 0.09 -6.34 16 8 N -0.64 -4.69 3.68 -185.22 -0.68 -5.37 16 9 C 0.08 0.49 8.08 -8.51 -0.07 0.42 16 10 C 0.11 0.94 4.60 -67.80 -0.31 0.63 16 11 N -0.72 -7.90 5.40 -53.61 -0.29 -8.19 16 12 C 0.54 8.83 7.85 -10.98 -0.09 8.74 16 13 O -0.51 -10.25 15.45 5.56 0.09 -10.16 16 14 C -0.15 -2.93 6.16 36.01 0.22 -2.70 16 15 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 16 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 17 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.80 13.22 55.49 0.73 -25.06 16 20 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 C 0.10 0.64 8.38 -8.50 -0.07 0.57 16 25 C -0.14 -1.13 5.85 -26.72 -0.16 -1.28 16 26 C 0.52 5.61 8.02 -10.83 -0.09 5.52 16 27 O -0.52 -7.93 17.60 5.55 0.10 -7.83 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.73 7.00 -51.93 -0.36 0.37 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.58 7.07 -51.93 -0.37 0.21 16 35 H 0.13 1.15 7.45 -51.93 -0.39 0.77 16 36 H 0.40 3.79 8.76 -40.82 -0.36 3.43 16 37 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 38 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.11 0.91 7.89 -51.92 -0.41 0.50 16 43 H 0.11 0.78 7.50 -51.93 -0.39 0.39 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -38.16 381.70 -8.19 -46.36 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.04 Total: -0.76 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -0.11 Total: 4.85 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.84 Total: -44.41 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.27 Total: -24.33 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.16 -8.19 -46.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759177864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.772 kcal (2) G-P(sol) polarization free energy of solvation -38.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds