Wall clock time and date at job start Tue Mar 31 2020 23:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46762 * 124.34850 * 2 1 4 4 C 1.54479 * 105.53509 * 163.21275 * 3 2 1 5 5 H 1.09001 * 110.99877 * 143.34173 * 4 3 2 6 6 C 1.50698 * 110.97021 * 267.08919 * 4 3 2 7 7 O 1.21279 * 120.00477 * 353.83695 * 6 4 3 8 8 N 1.34782 * 119.99866 * 173.83317 * 6 4 3 9 9 C 1.47063 * 136.05924 * 359.62502 * 8 6 4 10 10 C 1.53756 * 87.88745 * 152.96944 * 9 8 6 11 11 N 1.46499 * 114.26784 * 139.79958 * 10 9 8 12 12 C 1.34772 * 120.00392 * 111.47325 * 11 10 9 13 13 O 1.21280 * 119.99900 * 359.97438 * 12 11 10 14 14 C 1.50693 * 120.00203 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47517 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00244 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99752 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00049 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99662 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00009 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47162 * 59.99728 * 20 18 16 22 22 H 1.48501 * 109.46936 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47207 * 299.99899 * 20 18 16 24 24 C 1.47069 * 136.05410 * 180.02562 * 8 6 4 25 25 C 1.54623 * 101.76448 * 25.20998 * 4 3 2 26 26 C 1.34417 * 124.35094 * 179.82764 * 2 1 3 27 27 O 1.21283 * 124.94355 * 0.43141 * 26 2 1 28 28 H 1.08998 * 109.46843 * 180.19427 * 1 2 3 29 29 H 1.09000 * 109.46978 * 300.19813 * 1 2 3 30 30 H 1.09003 * 109.47376 * 60.19602 * 1 2 3 31 31 H 1.09004 * 110.38933 * 44.10688 * 3 2 1 32 32 H 1.08995 * 110.11843 * 282.18104 * 3 2 1 33 33 H 1.08996 * 113.47126 * 267.69923 * 9 8 6 34 34 H 1.09006 * 113.46275 * 38.14255 * 9 8 6 35 35 H 1.09002 * 114.39204 * 272.67785 * 10 9 8 36 36 H 0.97000 * 119.99711 * 291.46916 * 11 10 9 37 37 H 1.09000 * 109.47472 * 300.00242 * 14 12 11 38 38 H 1.09004 * 109.46994 * 59.99826 * 14 12 11 39 39 H 0.97007 * 119.99513 * 180.02562 * 19 18 16 40 40 H 1.09004 * 113.46641 * 321.85354 * 24 8 6 41 41 H 1.08996 * 113.47345 * 92.24460 * 24 8 6 42 42 H 1.09000 * 110.48720 * 216.52574 * 25 4 3 43 43 H 1.09003 * 110.60041 * 93.93250 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7029 0.7493 0.4299 5 1 4.4752 1.3009 -0.1063 6 6 3.8838 0.8841 1.9199 7 8 3.0227 1.4138 2.5899 8 7 5.0025 0.4159 2.5080 9 6 6.2260 -0.2679 2.0630 10 6 6.9443 0.3517 3.2731 11 7 7.8819 -0.5519 3.9443 12 6 9.2072 -0.3148 3.8831 13 8 9.6237 0.6464 3.2719 14 6 10.1716 -1.2439 4.5740 15 16 11.8650 -0.6622 4.3088 16 6 12.7551 -1.8955 5.1984 17 1 12.2227 -2.6943 5.6931 18 6 14.1405 -1.8403 5.2633 19 7 14.7892 -0.8663 4.6608 20 14 15.0841 -3.1481 6.2058 21 1 14.8055 -4.4819 5.6152 22 1 16.5395 -2.8648 6.1229 23 1 14.6577 -3.1378 7.6282 24 6 5.5335 0.3577 3.8782 25 6 3.6898 -0.7377 0.0062 26 6 2.2234 -1.1097 0.0033 27 8 1.7946 -2.2442 -0.0007 28 1 -0.3633 -1.0277 0.0035 29 1 -0.3633 0.5169 0.8882 30 1 -0.3634 0.5108 -0.8917 31 1 1.9016 1.9392 0.7111 32 1 2.3263 1.6431 -1.0004 33 1 6.1571 -1.3548 2.1090 34 1 6.5996 0.0911 1.1040 35 1 7.3573 1.3440 3.0918 36 1 7.5489 -1.3208 4.4328 37 1 9.9565 -1.2621 5.6424 38 1 10.0647 -2.2485 4.1647 39 1 15.7575 -0.8280 4.7059 40 1 5.3170 1.2499 4.4659 41 1 5.2813 -0.5639 4.4028 42 1 4.2359 -1.3449 0.7282 43 1 4.1154 -0.8564 -0.9902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759177865.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:38 Heat of formation + Delta-G solvation = -54.955053 kcal Electronic energy + Delta-G solvation = -26359.974304 eV Core-core repulsion = 22340.289786 eV Total energy + Delta-G solvation = -4019.684518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.53421 -40.49526 -39.11181 -38.05360 -36.56021 -33.98871 -33.40134 -32.47556 -30.23264 -28.63450 -28.17793 -27.14673 -26.37496 -25.53666 -23.78709 -21.79607 -20.70771 -20.05309 -19.48054 -17.96479 -17.87900 -17.27789 -16.99954 -16.69479 -16.36436 -15.92368 -15.67714 -15.10088 -15.00434 -14.84388 -14.39677 -14.13853 -14.00793 -13.83696 -13.65690 -13.34031 -13.13789 -13.01979 -12.86379 -12.65878 -12.57811 -12.51359 -12.27179 -12.16598 -11.97276 -11.40285 -11.09782 -11.07241 -10.81640 -10.35607 -10.27781 -9.88375 -9.58323 -9.25855 -9.19043 -9.13651 -9.08361 -8.31547 -6.56401 -6.26395 -3.97778 2.06173 2.10381 2.19583 2.56733 2.84832 2.96649 3.20578 3.24740 3.27482 3.60247 3.67549 3.75555 3.79270 4.06374 4.15850 4.24523 4.44304 4.64337 4.74841 4.82436 4.83535 4.90488 5.01491 5.03724 5.05170 5.08221 5.09112 5.15086 5.19113 5.24766 5.31712 5.34763 5.49325 5.75644 5.79297 5.99456 6.05194 6.36828 6.61449 7.18204 7.47790 7.54981 7.61829 7.70797 8.30191 8.40699 9.19117 10.80901 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029786 B = 0.001748 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.801717 B =16010.616768 C =16341.894428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.620 5.620 3 C 0.116 3.884 4 C -0.120 4.120 5 H 0.131 0.869 6 C 0.555 3.445 7 O -0.531 6.531 8 N -0.642 5.642 9 C 0.078 3.922 10 C 0.119 3.881 11 N -0.726 5.726 12 C 0.537 3.463 13 O -0.512 6.512 14 C -0.155 4.155 15 S -0.059 6.059 16 C -0.538 4.538 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.095 3.905 25 C -0.146 4.146 26 C 0.516 3.484 27 O -0.530 6.530 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.134 0.866 36 H 0.403 0.597 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.269 0.731 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.442 2.921 -9.010 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.354 5.354 3 C -0.008 4.008 4 C -0.142 4.142 5 H 0.149 0.851 6 C 0.344 3.656 7 O -0.407 6.407 8 N -0.377 5.377 9 C -0.046 4.046 10 C 0.012 3.988 11 N -0.381 5.381 12 C 0.323 3.677 13 O -0.385 6.385 14 C -0.306 4.306 15 S 0.168 5.832 16 C -0.686 4.686 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.029 4.029 25 C -0.187 4.187 26 C 0.303 3.697 27 O -0.407 6.407 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.152 0.848 36 H 0.238 0.762 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -25.544 4.401 -9.822 27.719 hybrid contribution -0.017 -2.331 1.543 2.796 sum -25.562 2.069 -8.279 26.949 Atomic orbital electron populations 1.21579 0.77601 1.03815 1.01779 1.48088 1.06837 1.07147 1.73344 1.22030 0.88159 0.87992 1.02580 1.22250 1.00099 0.98285 0.93552 0.85150 1.19701 0.79030 0.77633 0.89212 1.90732 1.40559 1.44042 1.65341 1.49196 1.18688 1.58560 1.11292 1.23808 0.81481 0.98544 1.00798 1.22670 0.87604 0.96458 0.92080 1.45840 1.05985 1.30059 1.56182 1.20399 0.81846 0.85711 0.79695 1.90716 1.77364 1.29219 1.41196 1.23546 1.02442 1.01607 1.02965 1.85400 0.89977 1.37643 1.70203 1.22819 0.93974 1.13316 1.38458 0.90913 1.24987 0.96619 0.96381 0.95525 1.70003 1.08704 1.30652 1.40875 0.86222 0.78408 0.80922 0.79944 1.19924 1.20797 1.19925 1.23400 0.90207 1.03509 0.85755 1.22387 0.95677 0.94925 1.05666 1.20800 0.89087 0.84506 0.75273 1.90745 1.78497 1.20997 1.50461 0.89902 0.91753 0.91840 0.88231 0.89775 0.88897 0.89199 0.84814 0.76241 0.88986 0.88979 0.92080 0.89357 0.89184 0.87587 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 11.14 59.85 0.67 1.28 16 2 N -0.62 -5.04 3.33 -180.29 -0.60 -5.64 16 3 C 0.12 0.68 6.73 -3.12 -0.02 0.66 16 4 C -0.12 -0.71 3.40 -90.14 -0.31 -1.02 16 5 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 6 C 0.56 5.20 7.41 -10.98 -0.08 5.12 16 7 O -0.53 -6.88 16.28 5.56 0.09 -6.78 16 8 N -0.64 -5.28 3.54 -185.06 -0.65 -5.93 16 9 C 0.08 0.53 7.05 -8.37 -0.06 0.48 16 10 C 0.12 1.05 4.62 -67.67 -0.31 0.74 16 11 N -0.73 -7.45 5.39 -53.48 -0.29 -7.73 16 12 C 0.54 8.57 7.85 -10.99 -0.09 8.49 16 13 O -0.51 -10.25 15.45 5.56 0.09 -10.16 16 14 C -0.16 -2.81 6.16 36.00 0.22 -2.59 16 15 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 16 C -0.54 -14.73 9.50 30.94 0.29 -14.44 16 17 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 18 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 19 N -0.87 -25.44 13.22 55.49 0.73 -24.70 16 20 Si 0.92 20.82 29.55 -169.99 -5.02 15.79 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C 0.09 0.73 8.38 -8.50 -0.07 0.66 16 25 C -0.15 -0.94 6.22 -26.74 -0.17 -1.11 16 26 C 0.52 5.22 8.02 -10.86 -0.09 5.13 16 27 O -0.53 -7.51 17.35 5.55 0.10 -7.42 16 28 H 0.08 0.63 7.53 -51.93 -0.39 0.24 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.69 6.94 -51.93 -0.36 0.33 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.54 8.11 -51.93 -0.42 0.12 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.13 1.42 7.45 -51.93 -0.39 1.04 16 36 H 0.40 2.96 8.76 -40.82 -0.36 2.60 16 37 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 38 H 0.09 1.52 8.14 -51.91 -0.42 1.10 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.11 0.71 6.69 -51.93 -0.35 0.37 16 43 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 381.00 15.07 5.74 5.74 Total: -1.00 -38.55 381.00 -8.17 -46.73 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.04 Total: -1.53 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -0.11 Total: 5.37 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -0.81 Total: -44.01 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: 0.27 Total: -24.36 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.55 -8.17 -46.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759177865.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.230 kcal (2) G-P(sol) polarization free energy of solvation -38.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds