Wall clock time and date at job start Tue Mar 31 2020 23:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21278 * 120.00167 * 2 1 4 4 N 1.34772 * 119.99765 * 179.97438 * 2 1 3 5 5 C 1.47585 * 134.49178 * 179.97438 * 4 2 1 6 6 C 1.53952 * 86.11482 * 155.36507 * 5 4 2 7 7 C 1.50701 * 113.74114 * 137.95763 * 6 5 4 8 8 O 1.21287 * 119.99731 * 1.91723 * 7 6 5 9 9 N 1.34767 * 119.99869 * 181.92630 * 7 6 5 10 10 C 1.46500 * 119.99895 * 179.97438 * 9 7 6 11 11 C 1.53501 * 114.20747 * 204.99407 * 10 9 7 12 12 N 1.47065 * 87.98741 * 220.14872 * 11 10 9 13 13 C 1.34775 * 136.05752 * 207.08848 * 12 11 10 14 14 O 1.21276 * 119.99984 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00022 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47116 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00013 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00250 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00102 * 179.72368 * 17 16 15 20 20 N 1.31626 * 120.00155 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00292 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47043 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47048 * 119.99960 * 21 19 17 24 24 H 1.48504 * 109.47465 * 240.00413 * 21 19 17 25 25 C 1.47067 * 87.88377 * 27.34414 * 12 11 10 26 26 C 1.47818 * 134.45902 * 359.87868 * 4 2 1 27 27 H 1.08996 * 109.47059 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46927 * 300.00902 * 1 2 3 29 29 H 1.09002 * 109.46991 * 60.00090 * 1 2 3 30 30 H 1.09000 * 113.76767 * 41.06439 * 5 4 2 31 31 H 1.09005 * 113.86969 * 269.67640 * 5 4 2 32 32 H 1.08997 * 113.73376 * 269.15188 * 6 5 4 33 33 H 0.97001 * 120.00444 * 359.97438 * 9 7 6 34 34 H 1.09001 * 113.28417 * 338.06104 * 10 9 7 35 35 H 1.09001 * 113.46643 * 105.36573 * 11 10 9 36 36 H 1.09004 * 113.51834 * 334.94016 * 11 10 9 37 37 H 1.09001 * 109.47434 * 59.99478 * 15 13 12 38 38 H 1.08999 * 109.47072 * 299.99957 * 15 13 12 39 39 H 0.97004 * 120.00604 * 179.97438 * 20 19 17 40 40 H 1.09001 * 113.47005 * 87.43764 * 25 12 11 41 41 H 1.09003 * 113.46723 * 217.87945 * 25 12 11 42 42 H 1.09000 * 113.77234 * 90.36823 * 26 4 2 43 43 H 1.08999 * 113.83005 * 318.90741 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6097 -1.5366 0.0002 6 6 3.1596 -2.8618 0.6415 7 6 3.8592 -4.0743 0.0836 8 8 4.7156 -3.9432 -0.7652 9 7 3.5332 -5.3042 0.5277 10 6 4.2130 -6.4830 -0.0151 11 6 3.3986 -7.7804 0.0838 12 7 4.6447 -8.4742 0.4426 13 6 5.1247 -9.7284 0.3284 14 8 4.4461 -10.5929 -0.1843 15 6 6.5041 -10.0567 0.8387 16 16 6.8559 -11.8073 0.5430 17 6 8.4811 -11.9107 1.2158 18 1 8.9466 -11.0336 1.6405 19 6 9.1608 -13.1208 1.2056 20 7 8.5915 -14.1911 0.6930 21 14 10.8840 -13.2303 1.9183 22 1 11.2945 -11.8973 2.4279 23 1 10.8973 -14.2114 3.0329 24 1 11.8300 -13.6693 0.8610 25 6 5.1341 -7.1985 0.9869 26 6 1.7848 -2.5913 0.0034 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.2236 -0.9179 0.6549 31 1 4.0350 -1.6531 -0.9967 32 1 3.1497 -2.8407 1.7313 33 1 2.8485 -5.4091 1.2067 34 1 4.6606 -6.3098 -0.9937 35 1 2.9805 -8.1041 -0.8694 36 1 2.6607 -7.7707 0.8860 37 1 6.5542 -9.8519 1.9081 38 1 7.2397 -9.4446 0.3168 39 1 9.0666 -15.0368 0.6855 40 1 4.8541 -7.0346 2.0275 41 1 6.1946 -7.0265 0.8031 42 1 1.6714 -3.0178 -0.9933 43 1 0.9440 -2.8132 0.6606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759189562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:18 Heat of formation + Delta-G solvation = -24.234865 kcal Electronic energy + Delta-G solvation = -25711.496977 eV Core-core repulsion = 21693.144587 eV Total energy + Delta-G solvation = -4018.352390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45066 -40.55716 -39.37040 -37.97904 -37.42688 -34.32375 -32.46386 -31.74814 -30.49720 -29.32647 -27.74183 -26.80147 -26.21088 -25.49712 -24.39250 -21.83403 -20.91176 -19.58346 -19.19063 -18.13448 -17.80191 -17.57559 -17.14031 -16.71565 -16.34870 -15.92255 -15.64086 -15.30122 -14.93691 -14.83237 -14.59018 -14.13226 -13.91779 -13.60866 -13.45529 -13.34711 -13.11916 -13.02714 -12.95653 -12.86738 -12.69723 -12.53676 -12.44757 -11.89044 -11.69486 -11.44306 -11.09286 -11.04902 -10.79102 -10.61924 -10.23768 -9.85418 -9.66476 -9.48473 -9.33230 -9.10726 -8.77444 -8.28856 -6.55059 -6.25160 -3.96456 1.95420 2.06351 2.09686 2.40728 2.78662 3.02639 3.19699 3.23319 3.28998 3.50684 3.53246 3.80363 3.94835 4.12714 4.16643 4.30173 4.39769 4.45341 4.58587 4.64332 4.73911 4.80610 4.82519 4.86729 5.04924 5.08924 5.09307 5.10391 5.26630 5.30576 5.36894 5.42502 5.49628 5.51652 5.80951 5.84924 5.98885 6.08899 6.87546 7.06040 7.56835 7.59704 7.62816 7.69563 8.32157 8.41388 9.20392 10.82349 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.030356 B = 0.001594 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.159028 B =17558.610783 C =18263.541049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.535 3.465 3 O -0.544 6.544 4 N -0.649 5.649 5 C 0.128 3.872 6 C -0.151 4.151 7 C 0.528 3.472 8 O -0.525 6.525 9 N -0.713 5.713 10 C 0.108 3.892 11 C 0.098 3.902 12 N -0.650 5.650 13 C 0.567 3.433 14 O -0.510 6.510 15 C -0.145 4.145 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.074 0.926 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.279 1.279 25 C 0.087 3.913 26 C 0.119 3.881 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.405 0.595 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.268 0.732 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.904 25.757 2.291 31.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.326 3.674 3 O -0.421 6.421 4 N -0.386 5.386 5 C 0.006 3.994 6 C -0.174 4.174 7 C 0.313 3.687 8 O -0.400 6.400 9 N -0.365 5.365 10 C 0.002 3.998 11 C -0.027 4.027 12 N -0.390 5.390 13 C 0.357 3.643 14 O -0.383 6.383 15 C -0.295 4.295 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.092 0.908 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.038 4.038 26 C -0.004 4.004 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.148 0.852 33 H 0.240 0.760 34 H 0.152 0.848 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.974 24.891 0.832 30.713 hybrid contribution 1.515 0.694 1.547 2.274 sum -16.459 25.585 2.379 30.515 Atomic orbital electron populations 1.21821 0.91007 1.04307 1.05469 1.20553 0.90288 0.81583 0.75022 1.90755 1.70749 1.30379 1.50175 1.50127 1.09061 1.05305 1.74132 1.23045 0.83550 0.90545 1.02271 1.23397 0.97188 0.93736 1.03030 1.20234 0.82691 0.83973 0.81845 1.90781 1.31749 1.85971 1.31502 1.45814 1.41775 1.05474 1.43408 1.22984 0.94511 0.82913 0.99381 1.23194 0.89507 0.87985 1.01966 1.49343 1.18678 1.08395 1.62537 1.19941 0.88090 0.78493 0.77798 1.90728 1.59814 1.44715 1.43014 1.23479 0.94631 1.07599 1.03813 1.85404 1.20109 0.98056 1.79750 1.22896 1.01106 0.98620 1.45753 0.90814 1.24992 0.98822 0.94657 0.95058 1.70022 1.37578 1.00201 1.42438 0.86105 0.82310 0.78297 0.78716 1.19599 1.20545 1.20504 1.23504 1.00990 0.81014 0.98278 1.23191 0.96058 0.79647 1.01528 0.90580 0.88572 0.88509 0.89193 0.87970 0.85230 0.75971 0.84810 0.89603 0.89758 0.89222 0.89099 0.92183 0.89556 0.89571 0.88744 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.34 36.01 0.37 -0.21 16 2 C 0.53 4.17 8.17 -10.99 -0.09 4.08 16 3 O -0.54 -6.91 17.83 5.56 0.10 -6.81 16 4 N -0.65 -3.79 3.61 -178.18 -0.64 -4.43 16 5 C 0.13 0.79 8.17 -2.96 -0.02 0.76 16 6 C -0.15 -0.50 4.33 -90.83 -0.39 -0.89 16 7 C 0.53 3.11 7.36 -10.99 -0.08 3.03 16 8 O -0.53 -5.53 15.50 5.55 0.09 -5.44 16 9 N -0.71 -2.98 5.39 -53.48 -0.29 -3.26 16 10 C 0.11 0.78 4.62 -67.67 -0.31 0.47 16 11 C 0.10 0.84 8.38 -8.51 -0.07 0.77 16 12 N -0.65 -8.45 3.69 -185.07 -0.68 -9.13 16 13 C 0.57 10.59 8.10 -10.99 -0.09 10.50 16 14 O -0.51 -11.57 16.64 5.56 0.09 -11.47 16 15 C -0.14 -2.92 5.98 36.00 0.22 -2.70 16 16 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 17 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 21 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.09 0.77 8.25 -8.37 -0.07 0.70 16 26 C 0.12 0.27 7.71 -2.83 -0.02 0.24 16 27 H 0.08 0.09 7.22 -51.93 -0.37 -0.28 16 28 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.76 7.43 -51.93 -0.39 0.37 16 32 H 0.13 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.41 0.42 8.76 -40.82 -0.36 0.06 16 34 H 0.13 1.22 7.45 -51.93 -0.39 0.83 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 38 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 0.21 8.09 -51.93 -0.42 -0.21 16 43 H 0.10 -0.04 7.97 -51.93 -0.41 -0.46 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -40.58 388.16 -8.46 -49.04 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -6.11 Total: -5.43 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -0.37 Total: 3.89 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -0.88 Total: -42.05 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.28 Total: -23.72 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -40.58 -8.46 -49.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759189562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.808 kcal (2) G-P(sol) polarization free energy of solvation -40.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds