Wall clock time and date at job start Wed Apr 1 2020 00:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34412 * 124.34671 * 2 1 4 4 O 1.21286 * 124.94559 * 0.38039 * 3 2 1 5 5 C 1.51282 * 110.11766 * 180.40513 * 3 2 1 6 6 C 1.54628 * 104.19254 * 16.24926 * 5 3 2 7 7 C 1.46761 * 124.34925 * 179.69528 * 2 1 3 8 8 H 1.08994 * 110.24698 * 43.98230 * 7 2 1 9 9 C 1.50706 * 110.24486 * 281.98401 * 7 2 1 10 10 O 1.21276 * 120.00088 * 341.45738 * 9 7 2 11 11 N 1.34776 * 119.99516 * 161.45293 * 9 7 2 12 12 C 1.46503 * 119.99597 * 179.97438 * 11 9 7 13 13 C 1.53945 * 113.74332 * 253.74346 * 12 11 9 14 14 N 1.47810 * 86.03763 * 222.08688 * 13 12 11 15 15 C 1.34780 * 134.45598 * 204.64603 * 14 13 12 16 16 O 1.21280 * 119.99947 * 179.86101 * 15 14 13 17 17 C 1.50696 * 120.00184 * 359.86624 * 15 14 13 18 18 S 1.80990 * 109.47360 * 180.02562 * 17 15 14 19 19 C 1.76201 * 100.00436 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99724 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.00271 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00095 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99925 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46856 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46744 * 120.00129 * 23 21 19 26 26 H 1.48500 * 109.46793 * 240.00335 * 23 21 19 27 27 C 1.47584 * 91.05271 * 24.54842 * 14 13 12 28 28 H 1.08995 * 109.47300 * 0.02885 * 1 2 3 29 29 H 1.08998 * 109.46544 * 120.02725 * 1 2 3 30 30 H 1.09004 * 109.47112 * 240.02613 * 1 2 3 31 31 H 1.09004 * 110.49097 * 134.92215 * 5 3 2 32 32 H 1.08992 * 110.48820 * 257.57321 * 5 3 2 33 33 H 1.09003 * 110.97150 * 93.32477 * 6 5 3 34 34 H 1.09001 * 110.97346 * 217.08669 * 6 5 3 35 35 H 0.96994 * 120.00452 * 0.02562 * 11 9 7 36 36 H 1.09001 * 112.94167 * 25.33641 * 12 11 9 37 37 H 1.09002 * 113.77349 * 336.34961 * 13 12 11 38 38 H 1.09002 * 113.76908 * 107.74376 * 13 12 11 39 39 H 1.08999 * 109.46965 * 300.00097 * 17 15 14 40 40 H 1.09003 * 109.47240 * 59.99923 * 17 15 14 41 41 H 0.96999 * 120.00104 * 179.97438 * 22 21 19 42 42 H 1.08993 * 113.76745 * 221.15498 * 27 14 13 43 43 H 1.08996 * 113.87101 * 89.76453 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2442 0.0066 5 6 3.6898 0.7379 -0.0100 6 6 3.7011 -0.7486 -0.4355 7 6 2.2931 -1.2117 0.0064 8 1 1.8985 -1.9420 -0.6998 9 6 2.3450 -1.8005 1.3927 10 8 2.0494 -1.1200 2.3521 11 7 2.7198 -3.0834 1.5663 12 6 2.7707 -3.6557 2.9139 13 6 4.2002 -3.8498 3.4513 14 7 3.7219 -5.1524 3.9604 15 6 4.1046 -5.9742 4.9579 16 8 3.5064 -7.0111 5.1525 17 6 5.2755 -5.6045 5.8315 18 16 5.5386 -6.8998 7.0678 19 6 6.9245 -6.2286 7.9242 20 1 7.3407 -5.2801 7.6183 21 6 7.4807 -6.9183 8.9926 22 7 6.9732 -8.0741 9.3658 23 14 8.9496 -6.2062 9.9010 24 1 9.3261 -4.9058 9.2906 25 1 8.5958 -5.9987 11.3282 26 1 10.0940 -7.1478 9.8063 27 6 2.6562 -5.1907 2.9402 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3632 -0.5143 -0.8898 30 1 -0.3633 -0.5134 0.8902 31 1 4.2327 1.3459 -0.7338 32 1 4.1194 0.8531 0.9850 33 1 3.8270 -0.8448 -1.5140 34 1 4.4754 -1.3010 0.0969 35 1 2.9565 -3.6276 0.7990 36 1 2.1031 -3.1537 3.6142 37 1 4.9557 -3.9341 2.6700 38 1 4.4745 -3.1441 4.2354 39 1 6.1697 -5.5026 5.2165 40 1 5.0701 -4.6589 6.3334 41 1 7.3622 -8.5562 10.1122 42 1 1.7001 -5.5535 3.3171 43 1 2.9552 -5.6695 2.0078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759216780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:24 Heat of formation + Delta-G solvation = -55.560170 kcal Electronic energy + Delta-G solvation = -26458.424877 eV Core-core repulsion = 22438.714120 eV Total energy + Delta-G solvation = -4019.710757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52960 -40.45934 -39.14568 -37.58393 -36.56467 -34.35212 -33.27705 -32.46230 -30.52227 -29.02522 -27.44057 -27.15005 -26.39996 -25.48250 -23.64250 -22.03074 -21.19850 -19.95433 -19.20572 -18.24336 -17.81748 -17.42394 -16.94528 -16.70832 -16.11224 -15.92882 -15.62783 -15.20006 -14.83398 -14.80308 -14.34163 -14.20202 -14.03319 -14.00838 -13.54919 -13.33254 -13.12537 -13.01701 -12.95920 -12.71402 -12.67577 -12.49637 -12.06919 -11.90678 -11.85748 -11.60911 -11.09317 -11.05023 -10.78981 -10.61569 -10.27015 -9.85415 -9.70499 -9.47730 -9.21637 -9.10668 -8.76141 -8.28478 -6.54871 -6.25067 -3.96299 1.92055 2.05351 2.29597 2.53898 2.79834 3.03056 3.19669 3.22213 3.28751 3.49233 3.71319 3.77019 3.96704 4.06526 4.16709 4.20749 4.40739 4.46844 4.68587 4.74552 4.80922 4.83715 5.03624 5.06078 5.08033 5.10370 5.21231 5.25491 5.29757 5.33658 5.35970 5.49210 5.50494 5.81317 5.86020 5.88594 5.98326 6.08891 6.54208 6.88180 7.56769 7.61016 7.65676 7.72050 8.32207 8.42414 9.20427 10.82430 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.001922 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.402083 B =14566.289248 C =15485.527910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.603 5.603 3 C 0.525 3.475 4 O -0.528 6.528 5 C -0.157 4.157 6 C -0.119 4.119 7 C 0.114 3.886 8 H 0.114 0.886 9 C 0.502 3.498 10 O -0.517 6.517 11 N -0.716 5.716 12 C 0.111 3.889 13 C 0.091 3.909 14 N -0.649 5.649 15 C 0.560 3.440 16 O -0.511 6.511 17 C -0.145 4.145 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.920 3.080 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.280 1.280 27 C 0.103 3.897 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.405 0.595 36 H 0.128 0.872 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.089 0.911 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.568 13.588 -25.906 30.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.337 5.337 3 C 0.314 3.686 4 O -0.403 6.403 5 C -0.197 4.197 6 C -0.157 4.157 7 C 0.005 3.995 8 H 0.131 0.869 9 C 0.286 3.714 10 O -0.391 6.391 11 N -0.369 5.369 12 C 0.005 3.995 13 C -0.034 4.034 14 N -0.389 5.389 15 C 0.350 3.650 16 O -0.384 6.384 17 C -0.296 4.296 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.021 4.021 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.240 0.760 36 H 0.146 0.854 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.942 12.872 -24.592 29.484 hybrid contribution 1.763 1.137 0.084 2.100 sum -8.179 14.009 -24.508 29.390 Atomic orbital electron populations 1.21627 0.77386 1.04205 1.01663 1.47817 1.06568 1.05831 1.73476 1.20845 0.89248 0.84190 0.74346 1.90741 1.78654 1.20887 1.50056 1.22377 0.94861 0.97006 1.05444 1.22632 0.93906 0.95850 1.03328 1.21631 0.93980 0.89242 0.94632 0.86869 1.21048 0.76839 0.81944 0.91595 1.90782 1.46693 1.59729 1.41902 1.45916 1.69331 1.12346 1.09339 1.23190 0.98028 0.93667 0.84568 1.23688 0.96605 0.84604 0.98454 1.49780 1.34628 1.22975 1.31552 1.20042 0.84280 0.81907 0.78774 1.90725 1.54950 1.23474 1.69275 1.23478 0.97481 1.06837 1.01780 1.85406 1.41424 1.24099 1.32459 1.22888 1.16851 1.09484 1.19051 0.90842 1.25004 0.97643 0.94746 0.96226 1.70025 1.40098 1.13356 1.26766 0.86101 0.81078 0.78959 0.79266 1.19599 1.20522 1.20536 1.23360 0.93209 0.93409 0.92096 0.89536 0.91820 0.91768 0.87388 0.87263 0.88274 0.88390 0.76000 0.85414 0.89418 0.89232 0.89259 0.89182 0.92191 0.89228 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.14 59.85 0.67 1.26 16 2 N -0.60 -4.45 2.56 -173.91 -0.45 -4.89 16 3 C 0.53 5.04 8.02 -10.86 -0.09 4.95 16 4 O -0.53 -7.31 17.35 5.55 0.10 -7.21 16 5 C -0.16 -0.86 6.85 -26.74 -0.18 -1.05 16 6 C -0.12 -0.28 6.71 -25.00 -0.17 -0.45 16 7 C 0.11 0.47 3.49 -68.06 -0.24 0.23 16 8 H 0.11 0.11 8.14 -51.93 -0.42 -0.32 16 9 C 0.50 3.36 7.00 -10.98 -0.08 3.28 16 10 O -0.52 -6.06 16.20 5.56 0.09 -5.97 16 11 N -0.72 -3.22 5.37 -55.33 -0.30 -3.52 16 12 C 0.11 0.83 4.40 -70.14 -0.31 0.52 16 13 C 0.09 0.81 8.43 -2.84 -0.02 0.78 16 14 N -0.65 -8.42 3.61 -178.33 -0.64 -9.06 16 15 C 0.56 10.47 8.07 -10.99 -0.09 10.38 16 16 O -0.51 -11.62 16.59 5.56 0.09 -11.52 16 17 C -0.15 -2.93 5.90 36.00 0.21 -2.72 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.53 -15.13 9.50 30.94 0.29 -14.84 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.57 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 23 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 C 0.10 0.90 8.59 -2.96 -0.03 0.88 16 28 H 0.09 0.66 7.53 -51.93 -0.39 0.27 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 34 H 0.10 0.13 7.89 -51.93 -0.41 -0.28 16 35 H 0.40 0.47 8.71 -40.82 -0.36 0.12 16 36 H 0.13 1.22 7.51 -51.93 -0.39 0.83 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 40 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.54 8.11 -51.93 -0.42 0.12 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -40.92 385.38 -8.09 -49.01 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -6.16 Total: -4.98 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.12 Total: 5.20 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.65 Total: -42.75 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.28 Total: -24.71 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -40.92 -8.09 -49.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759216780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.551 kcal (2) G-P(sol) polarization free energy of solvation -40.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds